mRNA_M-pyrifera_M_contig70621.16859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70621.16859.1
Unique NamemRNA_M-pyrifera_M_contig70621.16859.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A7S1D1I1_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1I1_CYCTE)

HSP 1 Score: 162 bits (409), Expect = 1.590e-46
Identity = 82/151 (54.30%), Postives = 115/151 (76.16%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEIG-GLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREAQGHEKQ 450
            YNLDP  SA S++ELW AL++ +L   I  +  GLD E+A+GG N S+GQ+QLLCIARA++RKP+VL++DE +AS+D+ TDA +Q ++R +F   T+LTIAHRL+TI DSDRVLVL  G+I EFD P  LL ++DS F A++ +++  E+Q
Sbjct:  148 YNLDPFGSA-SEEELWDALKKVELAEVIALLPLGLDEEVAEGGENFSQGQRQLLCIARALLRKPKVLVMDEATASIDNTTDAMIQSMIRENFADATVLTIAHRLNTIMDSDRVLVLDDGRIAEFDTPDALLANEDSEFRAMVEKSKAAEEQ 297          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A7S0AE70_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AE70_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.300e-45
Identity = 75/143 (52.45%), Postives = 108/143 (75.52%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEIG-GLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIR 426
            YN+DP     +DDE+W ALE+ QL   I  +  GL+ ++ +GG N S+GQ+QLLCIAR+++RKPR+L++DE +AS+D+ TDA++QR++R +F   T+LTIAHRL TIADSDR+LVL  G++ EFD PS LL   D  F++++R
Sbjct:   41 YNIDPFREK-TDDEIWQALEKVQLAGVIAAMASGLETQVVEGGENFSQGQRQLLCIARSLLRKPRILVMDEATASIDNTTDADIQRMIRENFADATILTIAHRLHTIADSDRILVLDDGEVAEFDSPSALLAA-DGIFASMMR 181          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A2H9TPF1_9FUNG (ATP-binding cassette transporter YOR1 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TPF1_9FUNG)

HSP 1 Score: 166 bits (419), Expect = 1.360e-44
Identity = 80/144 (55.56%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEIGGLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREA 432
            +NLDPT S  +D  +W ALERA L+  I+ +GGLDA + DGG NLS GQ+QLLC+ARAI++  R+L+LDE +A++D ATDA +Q  +R  FPG T+LTIAHR+ T+ D DR+LVL +GK++EFD P+ LL  +DS F+ L+RE+
Sbjct: 1145 WNLDPTLSH-TDQAMWDALERAHLREAIQHLGGLDALLQDGGENLSVGQRQLLCLARAILQNNRILVLDEATANIDLATDALIQESIRRDFPGCTILTIAHRISTVIDYDRILVLERGKVVEFDPPANLLAKEDSLFAFLVRES 1287          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: UPI0012D39A99 (multidrug resistance-associated protein 1-like n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D39A99)

HSP 1 Score: 154 bits (388), Expect = 2.490e-44
Identity = 79/145 (54.48%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEIG-GLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREA 432
            +NLDP  +  SDDE+W ALE A LK+ +EE   GL+ E+A+GG NLS GQ+QL+C+ARA++RK +VLILDE +A++D  TD  +Q  +RT F   T+LTIAHRL+TI DSD+V+VL KG+ IEFD P+ LL ++ SAF ++ ++A
Sbjct:   70 FNLDPF-AEKSDDEIWRALELAHLKSFVEETSLGLNHEVAEGGENLSVGQRQLVCLARALLRKTKVLILDEATAAIDLETDDLIQETIRTEFKECTILTIAHRLNTIMDSDKVIVLDKGQAIEFDSPNALLRNEKSAFYSMAKDA 213          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A7S1E013_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E013_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.610e-44
Identity = 75/141 (53.19%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    4 NLDPTNSASSDDELWSALERAQLKAKIEEIG-GLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALI 423
            NLDP  +A S+DELW  L++ QL   I  +  GLD E+++GG N S+GQ+QLLCIAR+++R P++L++DE +AS+D+ TDA +QR++R +F   T+LTIAHRL+TI DSDR+LVL  G++ EFD PS LL +K+ AF +L+
Sbjct:   78 NLDPFGNA-SEDELWEVLKKVQLAEVIAVLPKGLDEEVSEGGENFSQGQRQLLCIARSLLRNPKILVMDEATASIDNNTDAMIQRMIRENFADATVLTIAHRLNTIMDSDRILVLDDGEVAEFDTPSNLLSNKNGAFRSLV 217          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A0A8ZLW2_ARUDO (MRP1 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A8ZLW2_ARUDO)

HSP 1 Score: 151 bits (381), Expect = 6.670e-44
Identity = 72/143 (50.35%), Postives = 108/143 (75.52%), Query Frame = 1
Query:    4 NLDPTNSASSDDELWSALERAQLKAKIEEIGGL-DAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIRE 429
            N+DP     +D+++W ALE+ QLK  I  + GL ++ ++D G N S GQ+QL C+AR ++R+ ++L+LDE +AS+DSATDA LQRV++  F G T++TIAHR+ T+ DSD V+VL  GK+IE+D+PS+L+E++DSAF  L+ E
Sbjct:   20 NVDPLG-LHTDEDIWEALEKCQLKKTISALPGLLESPVSDDGENWSSGQRQLFCLARVLLRRNKILVLDEATASIDSATDAILQRVIKQEFSGCTVITIAHRVPTVTDSDMVMVLSYGKMIEYDRPSRLMENEDSAFCKLVAE 161          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A0C2HEQ3_9BILA (ABC transporter, ATP-binding protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2HEQ3_9BILA)

HSP 1 Score: 150 bits (379), Expect = 4.030e-43
Identity = 77/152 (50.66%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEI-GGLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREAQGHEKQK 453
            +NLDP   A++D E+WSALE A LKA +     GLD  I++GG N+S GQ+QL+C+ARAI+R  +VL+LDE +A++D  TDA +Q  +R  F   T+ TIAHRL+TI D DR++VL  G+IIE D PSKLLE+ DSAF+ ++ +++    +K
Sbjct:   44 FNLDPFG-ANTDSEIWSALELANLKAFVSSFPDGLDHLISEGGENISVGQRQLVCLARAILRNTKVLVLDEATAAIDVTTDAVIQATIREQFAKSTVFTIAHRLNTIMDYDRIMVLENGRIIELDSPSKLLENPDSAFARMVEDSKSESHKK 194          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A485L1X2_9STRA (Aste57867_14913 protein n=3 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1X2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.910e-43
Identity = 78/144 (54.17%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 YNLDPTNSASSDDELWSALERAQLKAKIEEIGGLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREA 432
            +NLDPT    SDDELW+AL++ QL    + +G L+ E+A+ GSN+S GQ+QLLCIARA++RK +V++LDE +A++D  TD  +Q+ +   F GVT L IAHRLDTI DSDR+LVL  G++ EFD P+ LL DKDS F+ L + A
Sbjct:   44 FNLDPTGLC-SDDELWAALKQVQL---ADFVGTLEFEVAEKGSNVSVGQRQLLCIARALLRKSKVVVLDEATANIDLETDRLIQQKITECFDGVTRLIIAHRLDTILDSDRILVLDAGRVKEFDAPATLLADKDSMFAQLAQNA 183          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A7R9JF75_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9JF75_TIMCA)

HSP 1 Score: 152 bits (383), Expect = 4.960e-43
Identity = 77/144 (53.47%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    4 NLDPTNSASSDDELWSALERAQLKAKIEEI-GGLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREA 432
            NLDP     SD+++W+ALE A LKA ++ +  GL+ ++ +GG NLS GQ+QL+C+ARA++RK +VLILDE +A+VD  TD  +QR +R  F   T+LTIAHRL+TI DSDRV+VL KG ++EFDKP  LL+DK S F  + ++A
Sbjct:  116 NLDPFGRL-SDEDVWAALEHAHLKAFVKGLPAGLNHQVTEGGENLSVGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQRTIRIEFKNSTVLTIAHRLNTILDSDRVIVLDKGHVVEFDKPETLLQDKTSIFHGMAKDA 258          
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Match: A0A182T680_9DIPT (Uncharacterized protein n=2 Tax=Anopheles TaxID=7164 RepID=A0A182T680_9DIPT)

HSP 1 Score: 155 bits (391), Expect = 4.990e-43
Identity = 79/144 (54.86%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    4 NLDPTNSASSDDELWSALERAQLKAKIEEI-GGLDAEIADGGSNLSKGQKQLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIAHRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREA 432
            NLDP N A SDD++W ALE A LK+ ++ +  G++ E+ +GG NLS GQ+QL+C+ARA++RK +VLILDE +A+VD  TD  +QR +RT F   T+LTIAHRL+TI DSD+V+VL KG+I EF  PS+LL+ K+SAF ++ ++A
Sbjct:  230 NLDPFN-AHSDDDIWKALEHAHLKSFVKGLTAGINHEVTEGGENLSVGQRQLVCLARALLRKTKVLILDEATAAVDLETDDLIQRTIRTEFKDCTVLTIAHRLNTIMDSDKVIVLDKGQITEFASPSELLQSKNSAFYSMAKDA 372          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70621.16859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D1I1_CYCTE1.590e-4654.30Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S0AE70_9STRA3.300e-4552.45Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A2H9TPF1_9FUNG1.360e-4455.56ATP-binding cassette transporter YOR1 n=1 Tax=Para... [more]
UPI0012D39A992.490e-4454.48multidrug resistance-associated protein 1-like n=1... [more]
A0A7S1E013_9STRA3.610e-4453.19Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A0A8ZLW2_ARUDO6.670e-4450.35MRP1 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A8... [more]
A0A0C2HEQ3_9BILA4.030e-4350.66ABC transporter, ATP-binding protein n=1 Tax=Ancyl... [more]
A0A485L1X2_9STRA4.910e-4354.17Aste57867_14913 protein n=3 Tax=Aphanomyces stella... [more]
A0A7R9JF75_TIMCA4.960e-4353.47(California timema) hypothetical protein n=1 Tax=T... [more]
A0A182T680_9DIPT4.990e-4354.86Uncharacterized protein n=2 Tax=Anopheles TaxID=71... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70621contigM-pyrifera_M_contig70621:599..1054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score159.8
Seed ortholog evalue9.8e-37
Seed eggNOG ortholog34349.G7DUF6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC transporter transmembrane region
EggNOG OGs2YC8V@29000,38CH6@33154,3NXEW@4751,3UYVW@5204,COG1024@1,COG1132@1,KOG0054@2759,KOG1684@2759
COG Functional cat.Q
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.4238894-CDS-M-pyrifera_M_contig70621:598..10541622816599.4238894-CDS-M-pyrifera_M_contig70621:598..1054Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70621 599..1054 -
1692278069.7761657-CDS-M-pyrifera_M_contig70621:598..10541692278069.7761657-CDS-M-pyrifera_M_contig70621:598..1054Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70621 599..1054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70621.16859.1prot_M-pyrifera_M_contig70621.16859.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70621 599..1054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70621.16859.1

>prot_M-pyrifera_M_contig70621.16859.1 ID=prot_M-pyrifera_M_contig70621.16859.1|Name=mRNA_M-pyrifera_M_contig70621.16859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
YNLDPTNSASSDDELWSALERAQLKAKIEEIGGLDAEIADGGSNLSKGQK
QLLCIARAIIRKPRVLILDEPSASVDSATDAELQRVLRTSFPGVTMLTIA
HRLDTIADSDRVLVLGKGKIIEFDKPSKLLEDKDSAFSALIREAQGHEKQ
K*
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mRNA from alignment at M-pyrifera_M_contig70621:599..1054-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70621.16859.1 ID=mRNA_M-pyrifera_M_contig70621.16859.1|Name=mRNA_M-pyrifera_M_contig70621.16859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig70621:599..1054- (Macrocystis pyrifera P11B4 male)
TATAATCTTGATCCAACAAACTCTGCTTCCTCCGACGATGAACTTTGGTC TGCATTGGAACGAGCACAATTGAAAGCCAAGATTGAAGAAATTGGTGGTC TTGATGCAGAGATTGCTGATGGTGGATCCAATCTCTCCAAAGGTCAAAAG CAATTGCTCTGCATTGCACGTGCAATCATCCGAAAGCCAAGAGTACTCAT TCTCGATGAGCCATCTGCATCAGTTGATTCTGCAACAGACGCAGAATTAC AACGAGTCTTGCGCACCTCTTTCCCTGGCGTCACCATGCTTACCATTGCA CATAGGCTTGACACCATTGCCGACAGCGACCGGGTCCTTGTTCTTGGGAA AGGCAAGATCATCGAATTTGACAAACCGTCCAAGCTCTTGGAAGACAAAG ACAGTGCATTCTCTGCACTCATCCGTGAAGCGCAAGGACACGAAAAGCAA AAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70621:599..1054-

>mRNA_M-pyrifera_M_contig70621.16859.1 ID=mRNA_M-pyrifera_M_contig70621.16859.1|Name=mRNA_M-pyrifera_M_contig70621.16859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig70621:599..1054- (Macrocystis pyrifera P11B4 male)
TATAATCTTGATCCAACAAACTCTGCTTCCTCCGACGATGAACTTTGGTC
TGCATTGGAACGAGCACAATTGAAAGCCAAGATTGAAGAAATTGGTGGTC
TTGATGCAGAGATTGCTGATGGTGGATCCAATCTCTCCAAAGGTCAAAAG
CAATTGCTCTGCATTGCACGTGCAATCATCCGAAAGCCAAGAGTACTCAT
TCTCGATGAGCCATCTGCATCAGTTGATTCTGCAACAGACGCAGAATTAC
AACGAGTCTTGCGCACCTCTTTCCCTGGCGTCACCATGCTTACCATTGCA
CATAGGCTTGACACCATTGCCGACAGCGACCGGGTCCTTGTTCTTGGGAA
AGGCAAGATCATCGAATTTGACAAACCGTCCAAGCTCTTGGAAGACAAAG
ACAGTGCATTCTCTGCACTCATCCGTGAAGCGCAAGGACACGAAAAGCAA
AAATGATATAATCTTGATCCAACAAACTCTGCTTCCTCCGACGATGAACT
TTGGTCTGCATTGGAACGAGCACAATTGAAAGCCAAGATTGAAGAAATTG
GTGGTCTTGATGCAGAGATTGCTGATGGTGGATCCAATCTCTCCAAAGGT
CAAAAGCAATTGCTCTGCATTGCACGTGCAATCATCCGAAAGCCAAGAGT
ACTCATTCTCGATGAGCCATCTGCATCAGTTGATTCTGCAACAGACGCAG
AATTACAACGAGTCTTGCGCACCTCTTTCCCTGGCGTCACCATGCTTACC
ATTGCACATAGGCTTGACACCATTGCCGACAGCGACCGGGTCCTTGTTCT
TGGGAAAGGCAAGATCATCGAATTTGACAAACCGTCCAAGCTCTTGGAAG
ACAAAGACAGTGCATTCTCTGCACTCATCCGTGAAGCGCAAGGACACGAA
AAGCAAAAATGA
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