mRNA_M-pyrifera_M_contig68846.16552.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68846.16552.1
Unique NamemRNA_M-pyrifera_M_contig68846.16552.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A1H7V819_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=17 Tax=Geodermatophilaceae TaxID=85030 RepID=A0A1H7V819_9ACTN)

HSP 1 Score: 127 bits (318), Expect = 3.360e-33
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ DH+ +EAEDGA+ LA  S+EQPDL+LSDWNMPNM+GIE L+A RA+G A  FGFVTSE S EMR +A  AGALFLI KPFT DTF++ L  +++
Sbjct:   23 AGYDDHDIVEAEDGADALAKVSSEQPDLVLSDWNMPNMTGIECLQALRASGSAVPFGFVTSEGSAEMREKAANAGALFLIAKPFTEDTFKEHLDGVIA 120
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BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A2M7HEL7_9PROT (Response regulator n=1 Tax=Zetaproteobacteria bacterium CG12_big_fil_rev_8_21_14_0_65_55_1124 TaxID=1974127 RepID=A0A2M7HEL7_9PROT)

HSP 1 Score: 124 bits (311), Expect = 3.830e-32
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ DHE  EA DG E L +A   QPDLI+SDWNMPNM+GIEFL+A +  G +T FGFVT+E S +MR  A  AGA FLITKPFTADTF+ +LG +LS
Sbjct:   23 AGYGDHESKEANDGVEALGIAREWQPDLIISDWNMPNMNGIEFLQALKGEGFSTPFGFVTTEGSAQMRQTAEEAGAKFLITKPFTADTFKTQLGPILS 120
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BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: UPI001CCCA962 (response regulator n=2 Tax=Blastococcus TaxID=38501 RepID=UPI001CCCA962)

HSP 1 Score: 123 bits (308), Expect = 1.040e-31
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ DH+ +EAEDGAE LA   +E PDLILSDWNMPNM+GIE L+A RA G +  FGFVTSE S EMR +A  AGALFLI KPFT DTF++ L  +++
Sbjct:   23 AGYDDHDIVEAEDGAEALAKVGSESPDLILSDWNMPNMTGIECLEALRAQGSSVPFGFVTSEGSAEMREKAANAGALFLIAKPFTEDTFKEHLDGVIA 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A4V1BMD4_9ACTN (Response regulator n=1 Tax=Nocardioides seonyuensis TaxID=2518371 RepID=A0A4V1BMD4_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 2.070e-31
Identity = 63/97 (64.95%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLL 291
            AGF  H+ +EAEDG + L    +EQPDL+LSDWNMPNM+GIE L+  RA G A  FGFVTSE S EMR  A GAGALFLI KPFTADTF   LG++L
Sbjct:   23 AGFSSHDFVEAEDGLDALNKVGSEQPDLVLSDWNMPNMTGIELLRQLRANGNAVPFGFVTSEGSPEMRELAAGAGALFLIAKPFTADTFADALGAVL 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A4U3CGA8_9ACTN (Histidine kinase n=7 Tax=Blastococcus TaxID=38501 RepID=A0A4U3CGA8_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 5.780e-31
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ DH+ +EAEDGA+ LA   +E+PDLILSDWNMPNMSGIE L+A R++G    FGFVTSE S EMRS+A  AGALFLI KPF  +TFQ+ L  +++
Sbjct:   23 AGYDDHDIVEAEDGADALAKVGSEKPDLILSDWNMPNMSGIECLQALRSSGSTVPFGFVTSEGSPEMRSKAADAGALFLIAKPFNEETFQEALSGVIA 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A2G6JVD0_9MICO (Response regulator n=1 Tax=Micrococcales bacterium TaxID=2026762 RepID=A0A2G6JVD0_9MICO)

HSP 1 Score: 120 bits (301), Expect = 1.150e-30
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AGF  HE +EAEDGA+ LA   +++PDL+LSDWNMPNMSG+E L+A R +G    FGFVTSE S +MR +A+ AGALFLI KPFT + FQ+ LG  L+
Sbjct:   23 AGFDGHELIEAEDGADALAKIDSQEPDLVLSDWNMPNMSGLELLQALRGSGNTVPFGFVTSEGSQQMREQASSAGALFLIAKPFTPEAFQEALGPYLN 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A239J8F7_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=1 Tax=Geodermatophilus saharensis TaxID=1137994 RepID=A0A239J8F7_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 1.620e-30
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ DHE +EAEDG +G     +E PDL+LSDWNMPNM+G+EFL+A R++G A  FGFVTSE S EMR +A  AGALFLI KPFT ++F++ L  +LS
Sbjct:   23 AGYDDHEVVEAEDGRDGYDKVRSENPDLVLSDWNMPNMTGLEFLQALRSSGSAVPFGFVTSEGSAEMREKAADAGALFLIAKPFTEESFRENLEGVLS 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: UPI0019A0DA2E (Response regulator n=1 Tax=Pseudorhodobacter sp. TaxID=1934400 RepID=UPI0019A0DA2E)

HSP 1 Score: 120 bits (300), Expect = 1.670e-30
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AGF +HE LEAE+GAEGLA   A  PDL+LSDWNMP +SGIEFL+A R+ G    FGFVTSES+  MR  A  +GALFLI KPFT DTF + LG +L+
Sbjct:   23 AGFAEHEFLEAENGAEGLASVVAHSPDLVLSDWNMPELSGIEFLQALRSQGHEVRFGFVTSESTDAMRELAMSSGALFLIAKPFTTDTFAEALGGVLT 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A239VU82_9MICO (Chemotaxis protein CheY n=3 Tax=Dermatophilaceae TaxID=85018 RepID=A0A239VU82_9MICO)

HSP 1 Score: 119 bits (299), Expect = 2.280e-30
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKEL 279
            AG+   E +E EDGAEGLA   +E PDL+LSDWNMPNMSGIEFL+A RA G   NFGFVTSE S  MR +A+ +GALFLI KPFTAD F + L
Sbjct:   23 AGYDSAEIIECEDGAEGLAKVKSESPDLVLSDWNMPNMSGIEFLQALRAEGNNVNFGFVTSEGSDAMREQASASGALFLIAKPFTADMFSEAL 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Match: A0A1H0EKG6_9ACTN (Two-component system, chemotaxis family, response regulator CheY n=4 Tax=root TaxID=1 RepID=A0A1H0EKG6_9ACTN)

HSP 1 Score: 119 bits (298), Expect = 3.210e-30
Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 AGFRDHEGLEAEDGAEGLAVASAEQPDLILSDWNMPNMSGIEFLKAFRAAGGATNFGFVTSESSVEMRSEANGAGALFLITKPFTADTFQKELGSLLS 294
            AG+ D + +EAEDG E LA  +++ PDL+LSDWNMPNM+GIE L+A RA G +  FGFVTSE S EMR +A+ AGALFLI KPFTADTF+ EL ++L+
Sbjct:   23 AGYDDVDIVEAEDGVECLAKVASDAPDLVLSDWNMPNMTGIECLRALRAQGSSVPFGFVTSEGSPEMREQASQAGALFLIAKPFTADTFRDELDTVLA 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68846.16552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H7V819_9ACTN3.360e-3364.29Two-component system, chemotaxis family, response ... [more]
A0A2M7HEL7_9PROT3.830e-3263.27Response regulator n=1 Tax=Zetaproteobacteria bact... [more]
UPI001CCCA9621.040e-3163.27response regulator n=2 Tax=Blastococcus TaxID=3850... [more]
A0A4V1BMD4_9ACTN2.070e-3164.95Response regulator n=1 Tax=Nocardioides seonyuensi... [more]
A0A4U3CGA8_9ACTN5.780e-3162.24Histidine kinase n=7 Tax=Blastococcus TaxID=38501 ... [more]
A0A2G6JVD0_9MICO1.150e-3060.20Response regulator n=1 Tax=Micrococcales bacterium... [more]
A0A239J8F7_9ACTN1.620e-3060.20Two-component system, chemotaxis family, response ... [more]
UPI0019A0DA2E1.670e-3063.27Response regulator n=1 Tax=Pseudorhodobacter sp. T... [more]
A0A239VU82_9MICO2.280e-3065.59Chemotaxis protein CheY n=3 Tax=Dermatophilaceae T... [more]
A0A1H0EKG6_9ACTN3.210e-3062.24Two-component system, chemotaxis family, response ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68846contigM-pyrifera_M_contig68846:6..1197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size850
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68846.16552.1prot_M-pyrifera_M_contig68846.16552.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68846 307..1197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.7930422-UTR-M-pyrifera_M_contig68846:5..3061622816580.7930422-UTR-M-pyrifera_M_contig68846:5..306Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68846 6..306 +
1692278058.81155-UTR-M-pyrifera_M_contig68846:5..3061692278058.81155-UTR-M-pyrifera_M_contig68846:5..306Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68846 6..306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.8061807-CDS-M-pyrifera_M_contig68846:306..3451622816580.8061807-CDS-M-pyrifera_M_contig68846:306..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68846 307..345 +
1692278058.8213363-CDS-M-pyrifera_M_contig68846:306..3451692278058.8213363-CDS-M-pyrifera_M_contig68846:306..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68846 307..345 +
1622816580.8185155-CDS-M-pyrifera_M_contig68846:687..11971622816580.8185155-CDS-M-pyrifera_M_contig68846:687..1197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68846 688..1197 +
1692278058.8311691-CDS-M-pyrifera_M_contig68846:687..11971692278058.8311691-CDS-M-pyrifera_M_contig68846:687..1197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68846 688..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68846.16552.1

>prot_M-pyrifera_M_contig68846.16552.1 ID=prot_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
MAEVTFRRIDAASTFDATQLGIEEQDVAGMLRDLLGRKVTTKSSSKLTKG
FAEHDVIGSFHADNGETVFLIGLDKAGAARIGGALTMIDPETLEGAIEAK
APLEGDPVENAKEVLNIMSALFHEGGSPHVVLGDTITGEELATAKEGQLQ
AVMDEMVWALGIRVDIEEYGTAEVLLVAKNLA*
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mRNA from alignment at M-pyrifera_M_contig68846:6..1197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68846.16552.1 ID=mRNA_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1192bp|location=Sequence derived from alignment at M-pyrifera_M_contig68846:6..1197+ (Macrocystis pyrifera P11B4 male)
GCCGGCTTCCGCGACCACGAAGGCCTCGAGGCCGAGGACGGCGCCGAGGG
CCTAGCCGTCGCGAGCGCCGAGCAACCGGACCTGATCCTGTCCGACTGGA
ACATGCCGAACATGTCCGGCATCGAGTTCCTCAAGGCCTTCCGCGCGGCG
GGCGGGGCGACGAACTTCGGCTTCGTGACGTCGGAGTCCTCCGTCGAGAT
GCGCAGCGAAGCGAACGGCGCCGGCGCGCTGTTCCTGATCACCAAGCCGT
TCACCGCCGACACCTTCCAGAAGGAGCTCGGCTCCTTGCTGAGCTGAGCC
CATGGCCGAAGTGACCTTCCGGCGCATCGATGCGGCCTCCGTCTTCAAGG
CGGAGGCGCTGCCCGTGGACGCCGCGCTGGCCATGGCCAGCCTGCCGGGA
GGCTGCGCGGGCAACCGCTATCCGGTCTTCGTCGAGGTCGCTGGCGAGGT
CGCCGCCGAGCATGCTCCCGGCGGGTACTGCGAGGTGGTGTTCATGCTCC
CGGGGAAGCCCGGCCGCTGGCGCGCGAGCGGAGAAGTCGTGGCCAGCGTG
AGCACGGCGACGGACGCCGCGCCGACGGGCCTCGGCATCGAGCTGCTGGG
CCTCGCCCTGACCAGCGAGGCGACCGACGCTGAGCAGCCGACCCCGGACG
ACGCGGAGCCGTCCGAAGCGGGCGCGAGCGAGACCTTCGACGCCACCCAG
CTCGGGATCGAGGAGCAGGACGTGGCCGGCATGTTGCGCGACCTCCTGGG
CCGCAAGGTCACCACGAAGTCCAGCTCCAAGCTGACCAAGGGCTTCGCCG
AGCACGACGTGATCGGCAGCTTCCACGCCGACAACGGGGAGACCGTCTTC
CTGATCGGCCTCGACAAGGCCGGCGCCGCGCGCATCGGCGGGGCCCTGAC
GATGATCGACCCCGAGACGCTCGAGGGCGCGATCGAGGCCAAGGCGCCCC
TCGAGGGCGACCCCGTCGAGAACGCCAAGGAGGTGCTGAACATCATGTCG
GCCCTGTTCCACGAAGGCGGTTCGCCCCACGTCGTGCTGGGCGACACGAT
CACCGGCGAGGAGCTCGCCACGGCCAAGGAGGGCCAGCTCCAAGCGGTGA
TGGACGAGATGGTCTGGGCCCTCGGCATCCGGGTCGACATCGAGGAGTAC
GGCACGGCCGAGGTCCTGCTGGTCGCGAAGAACCTGGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68846:6..1197+

>mRNA_M-pyrifera_M_contig68846.16552.1 ID=mRNA_M-pyrifera_M_contig68846.16552.1|Name=mRNA_M-pyrifera_M_contig68846.16552.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig68846:6..1197+ (Macrocystis pyrifera P11B4 male)
ATGGCCGAAGTGACCTTCCGGCGCATCGATGCGGCCTCCATGGCCGAAGT
GACCTTCCGGCGCATCGATGCGGCCTCCACCTTCGACGCCACCCAGCTCG
GGATCGAGGAGCAGGACGTGGCCGGCATGTTGCGCGACCTCCTGGGCCGC
AAGGTCACCACGAAGTCCAGCTCCAAGCTGACCAAGGGCTTCGCCGAGCA
CGACGTGATCGGCAGCTTCCACGCCGACAACGGGGAGACCGTCTTCCTGA
TCGGCCTCGACAAGGCCGGCGCCGCGCGCATCGGCGGGGCCCTGACGATG
ATCGACCCCGAGACGCTCGAGGGCGCGATCGAGGCCAAGGCGCCCCTCGA
GGGCGACCCCGTCGAGAACGCCAAGGAGGTGCTGAACATCATGTCGGCCC
TGTTCCACGAAGGCGGTTCGCCCCACGTCGTGCTGGGCGACACGATCACC
GGCGAGGAGCTCGCCACGGCCAAGGAGGGCCAGCTCCAAGCGGTGATGGA
CGAGATGGTCTGGGCCCTCGGCATCCGGGTCGACATCGAGGAGTACGGCA
CGGCCGAGGTCCTGCTGGTCGCGAAGAACCTGGCGTAGACCTTCGACGCC
ACCCAGCTCGGGATCGAGGAGCAGGACGTGGCCGGCATGTTGCGCGACCT
CCTGGGCCGCAAGGTCACCACGAAGTCCAGCTCCAAGCTGACCAAGGGCT
TCGCCGAGCACGACGTGATCGGCAGCTTCCACGCCGACAACGGGGAGACC
GTCTTCCTGATCGGCCTCGACAAGGCCGGCGCCGCGCGCATCGGCGGGGC
CCTGACGATGATCGACCCCGAGACGCTCGAGGGCGCGATCGAGGCCAAGG
CGCCCCTCGAGGGCGACCCCGTCGAGAACGCCAAGGAGGTGCTGAACATC
ATGTCGGCCCTGTTCCACGAAGGCGGTTCGCCCCACGTCGTGCTGGGCGA
CACGATCACCGGCGAGGAGCTCGCCACGGCCAAGGAGGGCCAGCTCCAAG
CGGTGATGGACGAGATGGTCTGGGCCCTCGGCATCCGGGTCGACATCGAG
GAGTACGGCACGGCCGAGGTCCTGCTGGTCGCGAAGAACCTGGCGTAG
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