mRNA_M-pyrifera_M_contig68699.16518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68699.16518.1
Unique NamemRNA_M-pyrifera_M_contig68699.16518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A2T9Y1F8_9FUNG (Myb-like, SWIRM and MPN domain-containing protein 1 n=3 Tax=Harpellales TaxID=61421 RepID=A0A2T9Y1F8_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 1.250e-27
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 SQPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            SQPF++ +   A ++MDLH+HL ETEIIGLL G WD   R++TV+++FPC    A   DD  +NVEMDPTS   V Q++ +L +R VGW HSHPTF
Sbjct:  490 SQPFQIFVHSNAQVIMDLHAHLMETEIIGLLGGYWDSNNRILTVKQSFPC---RAIATDDDHLNVEMDPTSEWLVRQEIAELDMRVVGWYHSHPTF 582          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A1R1YKZ1_9FUNG (Myb-like, SWIRM and MPN domain-containing protein 1 n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YKZ1_9FUNG)

HSP 1 Score: 111 bits (277), Expect = 2.060e-26
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 SQPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            SQPF++ +   A ++MDLHSHL ETEIIGLL G WD   R++TV+++FPC    A   DD  +NVEMDPTS   V Q++  + +R VGW HSHP+F
Sbjct:  527 SQPFKLFVHTNAQLLMDLHSHLMETEIIGLLGGSWDSINRVLTVKQSFPCK---ALVTDDDHLNVEMDPTSEFLVRQEIADMDMRVVGWYHSHPSF 619          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A7S2WPZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPZ1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.040e-26
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    4 QPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            QPF V + P+   + D H+HLA++EIIGLLAG WD E R+I V+  FPC   A  R DD  ++VEMDP S + + + ++  G++ VGW HSHP F
Sbjct:   13 QPFAVEVHPDVGFICDFHAHLADSEIIGLLAGFWDAENRVIYVQAPFPCV--ATDREDDGAMDVEMDPASELQIREIIQSHGMQVVGWYHSHPKF 105          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A7S2RLI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLI4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-24
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    4 QPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            QPF V++ P+A+ + DLHSHL+++EIIGLL G +   ER I ++ AFPC  +A +R D    +VEMDP S I     + + G+  VGW HSHPTF
Sbjct:   26 QPFAVKVSPDAAFLTDLHSHLSDSEIIGLLGGRYVPSERCIYIQAAFPC--KATSRADSGYTDVEMDPVSQIIAGDAIVRYGMTVVGWYHSHPTF 118          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A5B8MP63_9CHLO (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MP63_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 3.420e-24
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 SQPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            +QP+ V +  EA ++MD H+HL+  E+IG LAGDWD   R ++++RAFPC     T++ D+    EMDP S +  +QK+++LGL+ VGW HSHPTF
Sbjct:  311 AQPYHVEVSEEAMLLMDFHAHLSCYEVIGYLAGDWDAAARKLSIKRAFPCKGLTGTQQTDS---CEMDPASELDAKQKMDELGLKVVGWYHSHPTF 403          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A7S4J486_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J486_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.050e-24
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    4 QPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDA-RVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            QPF VR+ P+AS + DLH+HL+E+E+IGLL G +   ER I V+ AFPC    A  RDDA R +VEMDP S IA    +++ G+  VGW HSHPTF
Sbjct:  781 QPFAVRVSPDASFLADLHAHLSESEVIGLLGGRYVPSERCIYVQAAFPCK---AVERDDAGRTDVEMDPVSQIAAGDAIKRNGMEVVGWYHSHPTF 873          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A7S4MX88_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MX88_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.100e-24
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    4 QPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDA-RVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            QPF VR+ P+AS + DLH+HL+E+E+IGLL G +   ER I V+ AFPC    A  RDDA R +VEMDP S IA    +++ G+  VGW HSHPTF
Sbjct:  781 QPFAVRVSPDASFLADLHAHLSESEVIGLLGGRYVPSERCIYVQAAFPCK---AVERDDAGRTDVEMDPVSQIAAGDAIKRNGMEVVGWYHSHPTF 873          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A1Y1W3E4_9FUNG (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W3E4_9FUNG)

HSP 1 Score: 103 bits (256), Expect = 1.080e-23
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    4 QPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            QPF++ +   A + MD H+HL  +E+IGLL G W+  ++++TV RAFPC    A   +DA  NVEMDP   +AV Q++   GLR VGW HSHPTF
Sbjct:  306 QPFKLIVHSNAKLQMDFHAHLMMSEVIGLLGGQWNSHDKVLTVVRAFPCK---AMESEDAHTNVEMDPGEQLAVTQQINGNGLRVVGWYHSHPTF 397          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A8H7EQF1_9FUNG (Myb-like, SWIRM and MPN domain-containing protein 1 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EQF1_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 4.730e-23
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 SQPFRVRMLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            SQPF++ +     + MD H+HL  TEIIG LAG+WD+++ L+TV++A+PC    +       VNVEMDPTS I   Q +E+  ++ VGW HSHPTF
Sbjct:  398 SQPFQILVHSNVLLSMDFHAHLMTTEIIGFLAGEWDKQKMLMTVKKAYPC---RSLNTGHNEVNVEMDPTSAIETRQLIEENNMKVVGWYHSHPTF 490          
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Match: A0A2T9Z9A9_9FUNG (MPN domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Z9A9_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 1.750e-22
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   46 MDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATRRDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF 288
            MD HSHL ETEIIGLL G WD +++ +TV++ FPC    A   D+  +NVEMDPTS   V Q++ +L +R VGW HSHPTF
Sbjct:    1 MDFHSHLTETEIIGLLGGYWDPDKKTLTVKQGFPCK---AIPTDNDHLNVEMDPTSEWLVRQEISELNMRVVGWYHSHPTF 78          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68699.16518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T9Y1F8_9FUNG1.250e-2754.17Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A1R1YKZ1_9FUNG2.060e-2653.13Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A7S2WPZ1_9STRA6.040e-2648.42Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RLI4_9STRA1.290e-2448.42Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A5B8MP63_9CHLO3.420e-2447.92Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A7S4J486_9STRA4.050e-2454.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4MX88_9STRA4.100e-2454.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Y1W3E4_9FUNG1.080e-2349.47Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A8H7EQF1_9FUNG4.730e-2347.92Myb-like, SWIRM and MPN domain-containing protein ... [more]
A0A2T9Z9A9_9FUNG1.750e-2255.56MPN domain-containing protein n=1 Tax=Smittium meg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68699contigM-pyrifera_M_contig68699:11..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score98.6
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog936053.I1CSN6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prokaryotic homologs of the JAB domain
EggNOG OGs1GWP5@112252,38ES2@33154,3NWNK@4751,COG1310@1,KOG1555@2759
COG Functional cat.O
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68699.16518.1prot_M-pyrifera_M_contig68699.16518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68699 11..358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.8065739-CDS-M-pyrifera_M_contig68699:10..1471622816578.8065739-CDS-M-pyrifera_M_contig68699:10..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68699 11..147 -
1692278057.88771-CDS-M-pyrifera_M_contig68699:10..1471692278057.88771-CDS-M-pyrifera_M_contig68699:10..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68699 11..147 -
1622816579.0855625-CDS-M-pyrifera_M_contig68699:228..3581622816579.0855625-CDS-M-pyrifera_M_contig68699:228..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68699 229..358 -
1692278057.9007552-CDS-M-pyrifera_M_contig68699:228..3581692278057.9007552-CDS-M-pyrifera_M_contig68699:228..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68699 229..358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.0998964-UTR-M-pyrifera_M_contig68699:358..3791622816579.0998964-UTR-M-pyrifera_M_contig68699:358..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68699 359..379 -
1692278057.9136155-UTR-M-pyrifera_M_contig68699:358..3791692278057.9136155-UTR-M-pyrifera_M_contig68699:358..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68699 359..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68699.16518.1

>prot_M-pyrifera_M_contig68699.16518.1 ID=prot_M-pyrifera_M_contig68699.16518.1|Name=mRNA_M-pyrifera_M_contig68699.16518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MLPEASIVMDLHSHLAETEIIGLLAGDWDEEERLITVRRAFPCPTEAATR
RDDARVNVEMDPTSHIAVEQKVEQLGLRTVGWNHSHPTF
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mRNA from alignment at M-pyrifera_M_contig68699:11..379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68699.16518.1 ID=mRNA_M-pyrifera_M_contig68699.16518.1|Name=mRNA_M-pyrifera_M_contig68699.16518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig68699:11..379- (Macrocystis pyrifera P11B4 male)
TCTCAGCCGTTCCGTGTTCGTATGTTGCCAGAAGCATCAATTGTGATGGA TTTGCATTCTCATTTGGCTGAGACTGAGATCATCGGATTATTGGCTGGAG ATTGGGATGAGGAAGAACGTTTGATAACTGTGCGTCGAGCTTTTCCTTGT CGTGCGATTCGACTAGATGACAGTCGTGCAGCGGAACAAAGTTGGGGTGG ACCAAAGCCTCTTGATCTTGCATCAAGAGCAGCCACCGAAGCTGCCACAC GACGTGATGATGCACGTGTGAATGTGGAAATGGATCCCACGTCACATATT GCAGTGGAGCAAAAGGTTGAGCAACTGGGTTTGCGTACTGTTGGATGGAA CCATTCCCATCCCACATTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68699:11..379-

>mRNA_M-pyrifera_M_contig68699.16518.1 ID=mRNA_M-pyrifera_M_contig68699.16518.1|Name=mRNA_M-pyrifera_M_contig68699.16518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig68699:11..379- (Macrocystis pyrifera P11B4 male)
ATGTTGCCAGAAGCATCAATTGTGATGGATTTGCATTCTCATTTGGCTGA
GACTGAGATCATCGGATTATTGGCTGGAGATTGGGATGAGGAAGAACGTT
TGATAACTGTGCGTCGAGCTTTTCCTTGTCATGTTGCCAGAAGCATCAAT
TGTGATGGATTTGCATTCTCATTTGGCTGAGACTGAGATCATCGGATTAT
TGGCTGGAGATTGGGATGAGGAAGAACGTTTGATAACTGTGCGTCGAGCT
TTTCCTTGTCCCACCGAAGCTGCCACACGACGTGATGATGCACGTGTGAA
TGTGGAAATGGATCCCACGTCACATATTGCAGTGGAGCAAAAGGTTGAGC
AACTGGGTTTGCGTACTGTTGGATGGAACCATTCCCATCCCACATTTCCA
CCGAAGCTGCCACACGACGTGATGATGCACGTGTGAATGTGGAAATGGAT
CCCACGTCACATATTGCAGTGGAGCAAAAGGTTGAGCAACTGGGTTTGCG
TACTGTTGGATGGAACCATTCCCATCCCACATTT
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