mRNA_M-pyrifera_M_contig68524.16485.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68524.16485.1
Unique NamemRNA_M-pyrifera_M_contig68524.16485.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig68524.16485.1 vs. uniprot
Match: A0A2D9CEI5_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CEI5_9BACT)

HSP 1 Score: 161 bits (408), Expect = 2.110e-41
Identity = 111/300 (37.00%), Postives = 161/300 (53.67%), Query Frame = 1 
Query:   79 AVPVKQVAAPAADIDSGLLMLPDPALSGTRSHSALL---PVVLEAVDGRWTWSMPIEVREAGARVVFLSAEEAAW--NARLI---TPAGGVVSEDAVISRNAVGAATLISHEQIEWVSVDRSFACFQTPPAMNGTWTISISSDDPAAGYVLVDSGSDASMYTHVVERSTLVSKPITLRSQFSDAGQIQSLHADIKSPSGKRIQSSALRDSSEISFVPDETGSYSIRVEARGVGHDGRSLVLTTQQLVHVESQAPALGGMGVDTSDPERIGFGFAPDESARRTIIAAELWGRSDGRMIPVC 954
            A+PVKQV AP +DI+SG++ LP+P   G  S + LL   P   +A DG    + P    +  ARVVFL A   AW  + R I   T     V  DA I +  V     I  + + W    R++     P A     ++ +  ++   G+VL+D  SD S+YT+  +R TLV +P+TL S  SD  +I SL A ++SP G R   +A  D  E+SF PD+ G Y+++V A     +   ++L+TQ L+ VES    LG     T+  ++I   F   ++  RTI+AAE+WGRSD  M+PVC
Sbjct:   24 ALPVKQVVAPPSDIESGIVRLPNPVDLGETSRTLLLEIDPAQADA-DGLVDLAFPFVTGDGRARVVFLPAMPNAWVGDVRSIDARTQREIQVRTDAPIEQPGVS----IVRDPLPWGDAGRTYPAVMLP-ADQREMSVRVQMNERVDGFVLIDQLSDRSLYTYTKQRRTLVGRPVTLASSLSDGSKIVSLSAIVRSPDGSREVINAGVDQQELSFTPDQAGGYAVQVIAEYASDENWPVMLSTQHLIEVESPTTPLGAARASTAG-DQIELVFDDAQTDERTIVAAEVWGRSDAGMVPVC 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig68524.16485.1 vs. uniprot
Match: A0A812XYG5_9DINO (CmfA protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XYG5_9DINO)

HSP 1 Score: 162 bits (411), Expect = 4.410e-41
Identity = 109/295 (36.95%), Postives = 163/295 (55.25%), Query Frame = 1 
Query:   82 VPVKQVAAPAADIDSGLLMLPDPALSGTRSHSALLPVVLEAVDGRWTWSMPIEVREAGARVVFLSAEEAAWNARLITPAGGVVSEDAVISRNAVGAATLISHEQIEWVSVDRSFACFQTPPAMN-GTWTISISSDDPAAGYVLVDSGSDASMYTHVVERSTLVSKPITLRSQFSDAGQIQSLHADIKSPSGKRIQSSALRDSSEISFVPDETGSYSIRVEARGVGHDGRSLVLTTQQLVHVESQAPALGGMGVDTSDPERIGFGFAPDESARRTIIAAELW----GRSDGRMIPV 951
            +P+KQVAAP +DI +G + LP+ +    RS SALLPV LE   G W+WS+PI + +  AR+V       AW+ +LI P   ++ +    SR   G + L       W++ DR F      P      +T+SI+SD  AAGY+L+D G +  + +    RSTL + PI+++S F++   + +L A+I+SPSG      +  D+  I+FVP+E G Y+IR+ A G  +    +V TTQ L+    +A  L    +  +D   I F F PD + R TI+AAE+W    G  D + IPV
Sbjct:   23 LPIKQVAAPPSDILNGRVQLPELSKLAERSTSALLPVKLEFNQGVWSWSIPITLTDRPARIVLFPESPNAWSHQLIAPNTRLIDQ----SRIEQGTSPLA------WINQDRMFEHMTIQPTQAPAEYTLSITSDHEAAGYILLDHGPEVELTSQPTTRSTLQNHPISIKSSFNNNTTLTNLQAEIRSPSGFVFNEQSSTDT--ITFVPEEAGPYNIRIIATGTQNQ-LPIVRTTQHLIDAAPEAMPLKQPTL-VADDSAIRFQFTPDNANRHTILAAEVWALEWGMHDDQPIPV 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68524.16485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D9CEI5_9BACT2.110e-4137.00Uncharacterized protein n=3 Tax=Phycisphaerae TaxI... [more]
A0A812XYG5_9DINO4.410e-4136.95CmfA protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68524contigM-pyrifera_M_contig68524:272..1225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.7
Seed ortholog evalue8.6e-11
Seed eggNOG ortholog325777.GW15_0201405
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.acetyltransferases and hydrolases with the alpha beta hydrolase fold
EggNOG OGs1NR23@1224,1SN18@1236,COG1075@1,COG1075@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size954
Cds size954
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.2988944-CDS-M-pyrifera_M_contig68524:271..12251622816577.2988944-CDS-M-pyrifera_M_contig68524:271..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68524 272..1225 +
1692278057.153646-CDS-M-pyrifera_M_contig68524:271..12251692278057.153646-CDS-M-pyrifera_M_contig68524:271..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68524 272..1225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68524.16485.1prot_M-pyrifera_M_contig68524.16485.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68524 272..1225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68524.16485.1

>prot_M-pyrifera_M_contig68524.16485.1 ID=prot_M-pyrifera_M_contig68524.16485.1|Name=mRNA_M-pyrifera_M_contig68524.16485.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=318bp
MIKWRFLSCVVLGAACSLGANAEPLTAVPVKQVAAPAADIDSGLLMLPDP
ALSGTRSHSALLPVVLEAVDGRWTWSMPIEVREAGARVVFLSAEEAAWNA
RLITPAGGVVSEDAVISRNAVGAATLISHEQIEWVSVDRSFACFQTPPAM
NGTWTISISSDDPAAGYVLVDSGSDASMYTHVVERSTLVSKPITLRSQFS
DAGQIQSLHADIKSPSGKRIQSSALRDSSEISFVPDETGSYSIRVEARGV
GHDGRSLVLTTQQLVHVESQAPALGGMGVDTSDPERIGFGFAPDESARRT
IIAAELWGRSDGRMIPVC
back to top

mRNA from alignment at M-pyrifera_M_contig68524:272..1225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68524.16485.1 ID=mRNA_M-pyrifera_M_contig68524.16485.1|Name=mRNA_M-pyrifera_M_contig68524.16485.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig68524:272..1225+ (Macrocystis pyrifera P11B4 male)
ATGATCAAATGGCGTTTCCTCTCGTGTGTTGTTCTTGGAGCGGCGTGCTC
GCTGGGCGCGAATGCTGAGCCCTTGACTGCGGTCCCTGTGAAGCAGGTCG
CAGCGCCAGCCGCAGATATCGACTCGGGATTGCTGATGCTCCCCGACCCT
GCTTTGAGCGGGACGAGATCCCATTCGGCGCTGCTCCCTGTTGTGCTGGA
AGCAGTTGATGGACGCTGGACATGGTCAATGCCGATCGAAGTACGCGAAG
CTGGCGCTCGCGTTGTGTTCTTGTCGGCAGAAGAAGCAGCGTGGAATGCG
CGGCTGATCACACCGGCGGGTGGAGTAGTGAGTGAGGATGCCGTGATCTC
GCGCAATGCTGTGGGCGCAGCGACGCTGATCTCGCACGAGCAGATCGAGT
GGGTCTCGGTAGATCGCTCGTTCGCTTGTTTCCAGACACCTCCAGCGATG
AACGGCACTTGGACAATCAGTATCAGCTCTGATGATCCCGCGGCGGGATA
TGTGCTCGTCGATTCGGGATCAGACGCGAGCATGTACACGCATGTCGTGG
AGCGGAGCACGCTTGTGAGTAAGCCGATCACGCTGCGATCGCAGTTCTCC
GATGCAGGGCAGATTCAATCGCTTCATGCAGACATAAAGAGCCCTTCGGG
GAAACGCATTCAGAGCTCTGCACTGCGAGATAGCAGCGAGATCAGCTTTG
TTCCTGATGAGACAGGGAGCTACTCGATCCGTGTGGAAGCGCGAGGAGTT
GGGCACGATGGACGATCGCTCGTGCTCACGACACAGCAGTTAGTGCATGT
GGAATCACAAGCGCCGGCGCTCGGCGGGATGGGGGTTGACACATCAGATC
CGGAGCGCATCGGTTTCGGATTTGCGCCTGATGAATCTGCACGGCGGACA
ATCATCGCCGCGGAACTCTGGGGGAGAAGTGATGGCCGGATGATTCCCGT
CTGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68524:272..1225+

>mRNA_M-pyrifera_M_contig68524.16485.1 ID=mRNA_M-pyrifera_M_contig68524.16485.1|Name=mRNA_M-pyrifera_M_contig68524.16485.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1908bp|location=Sequence derived from alignment at M-pyrifera_M_contig68524:272..1225+ (Macrocystis pyrifera P11B4 male)
ATGATCAAATGGCGTTTCCTCTCGTGTGTTGTTCTTGGAGCGGCGTGCTC
GCTGGGCGCGAATGCTGAGCCCTTGACTGCGGTCCCTGTGAAGCAGGTCG
CAGCGCCAGCCGCAGATATCGACTCGGGATTGCTGATGCTCCCCGACCCT
GCTTTGAGCGGGACGAGATCCCATTCGGCGCTGCTCCCTGTTGTGCTGGA
AGCAGTTGATGGACGCTGGACATGGTCAATGCCGATCGAAGTACGCGAAG
CTGGCGCTCGCGTTGTGTTCTTGTCGGCAGAAGAAGCAGCGTGGAATGCG
CGGCTGATCACACCGGCGGGTGGAGTAGTGAGTGAGGATGCCGTGATCTC
GCGCAATGCTGTGGGCGCAGCGACGCTGATCTCGCACGAGCAGATCGAGT
GGGTCTCGGTAGATCGCTCGTTCGCTTGTTTCCAGACACCTCCAGCGATG
AACGGCACTTGGACAATCAGTATCAGCTCTGATGATCCCGCGGCGGGATA
TGTGCTCGTCGATTCGGGATCAGACGCGAGCATGTACACGCATGTCGTGG
AGCGGAGCACGCTTGTGAGTAAGCCGATCACGCTGCGATCGCAGTTCTCC
GATGCAGGGCAGATTCAATCGCTTCATGCAGACATAAAGAGCCCTTCGGG
GAAACGCATTCAGAGCTCTGCACTGCGAGATAGCAGCGAGATCAGCTTTG
TTCCTGATGAGACAGGGAGCTACTCGATCCGTGTGGAAGCGCGAGGAGTT
GGGCACGATGGACGATCGCTCGTGCTCACGACACAGCAGTTAGTGCATGT
GGAATCACAAGCGCCGGCGCTCGGCGGGATGGGGGTTGACACATCAGATC
CGGAGCGCATCGGTTTCGGATTTGCGCCTGATGAATCTGCACGGCGGACA
ATCATCGCCGCGGAACTCTGGGGGAGAAGTGATGGCCGGATGATTCCCGT
CTGCATGATCAAATGGCGTTTCCTCTCGTGTGTTGTTCTTGGAGCGGCGT
GCTCGCTGGGCGCGAATGCTGAGCCCTTGACTGCGGTCCCTGTGAAGCAG
GTCGCAGCGCCAGCCGCAGATATCGACTCGGGATTGCTGATGCTCCCCGA
CCCTGCTTTGAGCGGGACGAGATCCCATTCGGCGCTGCTCCCTGTTGTGC
TGGAAGCAGTTGATGGACGCTGGACATGGTCAATGCCGATCGAAGTACGC
GAAGCTGGCGCTCGCGTTGTGTTCTTGTCGGCAGAAGAAGCAGCGTGGAA
TGCGCGGCTGATCACACCGGCGGGTGGAGTAGTGAGTGAGGATGCCGTGA
TCTCGCGCAATGCTGTGGGCGCAGCGACGCTGATCTCGCACGAGCAGATC
GAGTGGGTCTCGGTAGATCGCTCGTTCGCTTGTTTCCAGACACCTCCAGC
GATGAACGGCACTTGGACAATCAGTATCAGCTCTGATGATCCCGCGGCGG
GATATGTGCTCGTCGATTCGGGATCAGACGCGAGCATGTACACGCATGTC
GTGGAGCGGAGCACGCTTGTGAGTAAGCCGATCACGCTGCGATCGCAGTT
CTCCGATGCAGGGCAGATTCAATCGCTTCATGCAGACATAAAGAGCCCTT
CGGGGAAACGCATTCAGAGCTCTGCACTGCGAGATAGCAGCGAGATCAGC
TTTGTTCCTGATGAGACAGGGAGCTACTCGATCCGTGTGGAAGCGCGAGG
AGTTGGGCACGATGGACGATCGCTCGTGCTCACGACACAGCAGTTAGTGC
ATGTGGAATCACAAGCGCCGGCGCTCGGCGGGATGGGGGTTGACACATCA
GATCCGGAGCGCATCGGTTTCGGATTTGCGCCTGATGAATCTGCACGGCG
GACAATCATCGCCGCGGAACTCTGGGGGAGAAGTGATGGCCGGATGATTC
CCGTCTGC
back to top