mRNA_M-pyrifera_M_contig68390.16457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68390.16457.1
Unique NamemRNA_M-pyrifera_M_contig68390.16457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68390.16457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68390contigM-pyrifera_M_contig68390:341..1072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue6.3e-11
Seed eggNOG ortholog2903.EOD39941
KEGG koko:K18466
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.3165855-CDS-M-pyrifera_M_contig68390:340..5181622816575.3165855-CDS-M-pyrifera_M_contig68390:340..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68390 341..518 +
1692278055.8185592-CDS-M-pyrifera_M_contig68390:340..5181692278055.8185592-CDS-M-pyrifera_M_contig68390:340..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68390 341..518 +
1622816575.3280654-CDS-M-pyrifera_M_contig68390:713..10721622816575.3280654-CDS-M-pyrifera_M_contig68390:713..1072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68390 714..1072 +
1692278055.8399742-CDS-M-pyrifera_M_contig68390:713..10721692278055.8399742-CDS-M-pyrifera_M_contig68390:713..1072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68390 714..1072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68390.16457.1prot_M-pyrifera_M_contig68390.16457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68390 341..1072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68390.16457.1

>prot_M-pyrifera_M_contig68390.16457.1 ID=prot_M-pyrifera_M_contig68390.16457.1|Name=mRNA_M-pyrifera_M_contig68390.16457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
PEVPLSRKHAAALHRLVNIAHCHGSFLDAAWVPLLATLERVQSILATREA
SDARAAEKMRSGSSSSTKAIAAEVVDSVTSLAPSLGSLVASTSFLEDAPL
REITQALTHSCAEALAERATAMGVEGGGDGRVPFALERLVDVAAHNAFRA
GVFWDLVSPLLETLAHASDSVIRAAGIQS
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mRNA from alignment at M-pyrifera_M_contig68390:341..1072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68390.16457.1 ID=mRNA_M-pyrifera_M_contig68390.16457.1|Name=mRNA_M-pyrifera_M_contig68390.16457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig68390:341..1072+ (Macrocystis pyrifera P11B4 male)
CCTGAAGTTCCACTGTCTCGAAAGCATGCCGCAGCTCTTCATCGACTTGT
TAATATTGCACATTGTCATGGCAGTTTTCTTGATGCTGCATGGGTTCCAT
TGTTAGCAACTTTGGAAAGAGTGCAATCCATCCTTGCAACAAGAGAAGCG
AGCGATGCTAGAGCTGCAGAAAAGATGAGTGAAAGAGAAGCTCAAGAGCG
ACTAGCGCGAATTCGTGAAGCAGGGCATCGCAAACCAGGTCTCATTGCTG
CTTTCAAACCCCACACAACTTCCTCTGCTTCATCCTCATCCTCCACCACC
ACCTCCCTATCTTCATCTCACCCAACAACACTGCCTTCCTCTGCCTCGTC
CTCAGCAACTACCTCTGGTGAAGGAAGCGGGTCATCATCTTCCACAAAGG
CAATTGCTGCTGAAGTTGTTGACAGTGTGACTTCACTTGCTCCATCGCTT
GGGAGTTTGGTTGCATCAACATCATTCTTGGAAGATGCTCCGTTGCGTGA
AATTACCCAAGCTTTGACACACTCCTGTGCAGAAGCATTGGCTGAAAGAG
CAACAGCAATGGGGGTTGAAGGAGGAGGGGATGGAAGAGTGCCGTTTGCA
TTAGAGCGTTTGGTAGATGTTGCTGCACATAATGCTTTTCGTGCAGGTGT
ATTTTGGGATCTTGTATCTCCATTGTTGGAAACACTGGCTCATGCCTCCG
ACTCTGTGATTCGTGCAGCTGGAATTCAATCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68390:341..1072+

>mRNA_M-pyrifera_M_contig68390.16457.1 ID=mRNA_M-pyrifera_M_contig68390.16457.1|Name=mRNA_M-pyrifera_M_contig68390.16457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig68390:341..1072+ (Macrocystis pyrifera P11B4 male)
CCTGAAGTTCCACTGTCTCGAAAGCATGCCGCAGCTCTTCATCGACTTGT
TAATATTGCACATTGTCATGGCAGTTTTCTTGATGCTGCATGGGTTCCAT
TGTTAGCAACTTTGGAAAGAGTGCAATCCATCCTTGCAACAAGAGAAGCG
AGCGATGCTAGAGCTGCAGAAAAGATGACCTGAAGTTCCACTGTCTCGAA
AGCATGCCGCAGCTCTTCATCGACTTGTTAATATTGCACATTGTCATGGC
AGTTTTCTTGATGCTGCATGGGTTCCATTGTTAGCAACTTTGGAAAGAGT
GCAATCCATCCTTGCAACAAGAGAAGCGAGCGATGCTAGAGCTGCAGAAA
AGATGAGAAGCGGGTCATCATCTTCCACAAAGGCAATTGCTGCTGAAGTT
GTTGACAGTGTGACTTCACTTGCTCCATCGCTTGGGAGTTTGGTTGCATC
AACATCATTCTTGGAAGATGCTCCGTTGCGTGAAATTACCCAAGCTTTGA
CACACTCCTGTGCAGAAGCATTGGCTGAAAGAGCAACAGCAATGGGGGTT
GAAGGAGGAGGGGATGGAAGAGTGCCGTTTGCATTAGAGCGTTTGGTAGA
TGTTGCTGCACATAATGCTTTTCGTGCAGGTGTATTTTGGGATCTTGTAT
CTCCATTGTTGGAAACACTGGCTCATGCCTCCGACTCTGTGATTCGTGCA
GCTGGAATTCAATCAGAAGCGGGTCATCATCTTCCACAAAGGCAATTGCT
GCTGAAGTTGTTGACAGTGTGACTTCACTTGCTCCATCGCTTGGGAGTTT
GGTTGCATCAACATCATTCTTGGAAGATGCTCCGTTGCGTGAAATTACCC
AAGCTTTGACACACTCCTGTGCAGAAGCATTGGCTGAAAGAGCAACAGCA
ATGGGGGTTGAAGGAGGAGGGGATGGAAGAGTGCCGTTTGCATTAGAGCG
TTTGGTAGATGTTGCTGCACATAATGCTTTTCGTGCAGGTGTATTTTGGG
ATCTTGTATCTCCATTGTTGGAAACACTGGCTCATGCCTCCGACTCTGTG
ATTCGTGCAGCTGGAATTCAATCA
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