mRNA_M-pyrifera_M_contig100733.165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100733.165.1
Unique NamemRNA_M-pyrifera_M_contig100733.165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A5A8DS12_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DS12_CAFRO)

HSP 1 Score: 119 bits (298), Expect = 1.540e-28
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   28 SRLAFASGNYSIFVLERDA--AGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDG----KKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSAV 411
            S LA+ SGN+SIF+L  D+  AG MQ+   L GH   V+AL F+PTD ++L+SGG+DG+ VW +      K +    NV+     +HESDVE   +A + + LI+GSKD N+K+WD  RG+TLLET+ GHK+AV
Sbjct: 1116 SALAYVSGNHSIFILHPDSSPAGAMQVARVLNGHDSPVRALVFHPTDPDVLVSGGADGIFVWSLRAGRPTKVIRSEANVSAE-FPAHESDVEVLVFAFKNN-LISGSKDCNIKVWDADRGYTLLETITGHKAAV 1247          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A5A8DER0_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DER0_CAFRO)

HSP 1 Score: 119 bits (298), Expect = 1.560e-28
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   28 SRLAFASGNYSIFVLERDA--AGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDG----KKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSAV 411
            S LA+ SGN+SIF+L  D+  AG MQ+   L GH   V+AL F+PTD ++L+SGG+DG+ VW +      K +    NV+     +HESDVE   +A + + LI+GSKD N+K+WD  RG+TLLET+ GHK+AV
Sbjct: 2301 SALAYVSGNHSIFILHPDSSPAGAMQVARVLNGHDSPVRALVFHPTDPDVLVSGGADGIFVWSLRAGRPTKVIRSEANVSAE-FPAHESDVEVLVFAFKNN-LISGSKDCNIKVWDADRGYTLLETITGHKAAV 2432          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A151Z8C0_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z8C0_9MYCE)

HSP 1 Score: 117 bits (293), Expect = 6.740e-28
Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   31 RLAFASGNYSIFVLERDAAGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSAV 411
            RLAF SGN SI++ + D  G   +   L GHK  V  L F+P D ++L+SGG DG+++WD     ++  ++    P D+HES+VEC  W  +G+ L++G KD N+K+WD  + F LLET+ GHK++V
Sbjct:   69 RLAFVSGNASIYITKEDHLGNFVVENVLIGHKTTVNCLLFHPRD-SILISGGFDGLIIWDYLKGFIIKRISPHQDP-DAHESNVECLTWICDGTALVSGGKDANIKVWDYLKNFKLLETITGHKASV 193          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A8J4Q183_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q183_9MYCE)

HSP 1 Score: 105 bits (263), Expect = 7.370e-24
Identity = 50/126 (39.68%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   28 SRLAFASGNYSIFVLERDAAGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKS 405
            SR AF SGN SI++ + +  G   +   L GH   V  L F+PT+  + +SGG +G++VWD+    ++  +     P D+H++ +EC  W +EG++L++GSKD+N+K+WD  R F L+ET+ GHK+
Sbjct:   53 SRFAFVSGNGSIYITKENDDGNFIVENVLAGHTHTVNCLLFHPTEP-IFVSGGFEGIIVWDLLSGFIIKKMISHIDP-DAHDARIECLYWLYEGTSLVSGSKDSNIKVWDSLRKFELIETITGHKA 176          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: Q54M39_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54M39_DICDI)

HSP 1 Score: 101 bits (252), Expect = 2.260e-22
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 CVNSAPHPLSRLAFASGNYSIFVLERDAAGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWD-VARGFTLLETVHGHKSAV 411
            C+  +P   SR AF SGN SI++ +       ++   L GH   V  L F+P +  +L+SGG DG+ +WD   K  ++   +T +  DSH+S VE   W + G++L+TGSKD+ +KIWD + +G+ LLET+  HK+ V
Sbjct:   55 CIGFSPDD-SRFAFVSGNGSIYIAKDMKNDSFEIENVLTGHSHSVDCLLFHPKEP-ILVSGGFDGIFIWDYL-KGFIIKKVLTHKDIDSHDSKVEALAWLYNGTSLVTGSKDSTIKIWDFMEQGYPLLETITAHKAPV 189          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A196SAF3_BLAHN (WD-40 repeat protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SAF3_BLAHN)

HSP 1 Score: 99.0 bits (245), Expect = 1.970e-21
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   34 LAFASGNYSIFVLERDAAGYMQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHK 402
            L + +G + I V + DA  +    + L GHK  ++ +  +P+ + +L+S G +G+ VWD++    +  +   T P D+HE DVEC  W ++G  L TG  D+ VK+WDV R F++LET++ HK
Sbjct:   53 LFYVNGTHGISVCQSDANNHFTRISVLQGHKRRIRQMQCHPS-KPILVSCGDEGIFVWDLNTHACIKKITEDTCP-DAHEEDVECMIWLYDGIVLATGGSDSTVKLWDVERDFSILETINAHK 173          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A5A8CZ90_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZ90_CAFRO)

HSP 1 Score: 84.7 bits (208), Expect = 1.350e-16
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  133 VKALSFNPTDRNMLLSGGSDGMLVWDVDG----KKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSAV 411
            V+AL F+PTD ++L+S  +DG+ VW +      K +    NV+     +HESDVE   +A + + LI+GSKD N+K+WD  RG+TLLET+ GHK+AV
Sbjct:  274 VRALVFHPTDPDVLVSARADGIFVWSLRAGRPTKVIRSEANVSAE-FPAHESDVEVLVFAFKNN-LISGSKDCNIKVWDADRGYTLLETITGHKAAV 368          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A6G0X1U7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1U7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.900e-16
Identity = 47/132 (35.61%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   28 SRLAFASGNYSIFVLERDAAGY--MQLRATLYGHKEEVKALSFNPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIW--DVARGF--TLLETVHGHKS 405
            +RLAF SGN +IFV   D  G   + L   +   K++V A+ F   D + L+  G++G+   ++   +L+  + +    +++HESDV C CW + G  L+TGSKD+N+K+W  D    +  T +ET+ GHK+
Sbjct:   35 TRLAFVSGNNAIFVCRLDTNGTRGVVLEKVIPLFKKDVHAILFFQEDEDQLVVVGNEGINFVNITSGELVYRIRIAQ--ENNHESDVTCACWMYGGLVLVTGSKDSNIKLWMRDATHSYEWTCVETITGHKA 164          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A7E6EDT3_9CHIR (Coronin n=7 Tax=Chiroptera TaxID=9397 RepID=A0A7E6EDT3_9CHIR)

HSP 1 Score: 65.5 bits (158), Expect = 9.370e-10
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  109 TLYGHKEEVKALSFNPTDRNMLLSGGSDGMLV-WDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSA 408
            TL GH + V  L ++PT RN+LLS GSD +++ W+V   ++L++++      D H   +   CW   GS L T  KD  ++I D  +G  + E    H+ A
Sbjct:   85 TLEGHSKRVGILCWHPTARNVLLSAGSDNVIIIWNVGTGEVLLSLD------DMHPDIIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAERARPHEGA 179          
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Match: A0A401NR49_SCYTO (Coronin n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401NR49_SCYTO)

HSP 1 Score: 59.7 bits (143), Expect = 4.600e-8
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  112 LYGHKEEVKALSFNPTDRNMLLSGGSDGMLV-WDVDGKKLLMTVNVTTRPKDSHESDVECFCWAHEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSA 408
            L GH + V  +S++PT RN+LLS GSD M++ W+V   + L+T++      D H   +   CW   GS + T  KD  V++ D      + E    H+ A
Sbjct:   21 LEGHSKRVGIISWHPTARNILLSAGSDNMIIIWNVGTGEPLITLD------DLHSDLIYNVCWNRNGSLICTTCKDKKVRVIDPREQRIIAEKNKAHEGA 114          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100733.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DS12_CAFRO1.540e-2848.51Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8DER0_CAFRO1.560e-2848.51Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A151Z8C0_9MYCE6.740e-2843.31Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A8J4Q183_9MYCE7.370e-2439.68Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q54M39_DICDI2.260e-2239.13Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A196SAF3_BLAHN1.970e-2136.59WD-40 repeat protein n=1 Tax=Blastocystis sp. subt... [more]
A0A5A8CZ90_CAFRO1.350e-1646.39Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A6G0X1U7_9STRA1.900e-1635.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7E6EDT3_9CHIR9.370e-1034.65Coronin n=7 Tax=Chiroptera TaxID=9397 RepID=A0A7E6... [more]
A0A401NR49_SCYTO4.600e-834.00Coronin n=1 Tax=Scyliorhinus torazame TaxID=75743 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100733contigM-pyrifera_M_contig100733:45..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog44689.DDB0305106
Preferred nameWDR90
KEGG koko:K11127,ko:K12602
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of histone H3-K79 methylation
EggNOG OGsKOG4155@1,KOG4155@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03032
Exons3
Model size411
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100733.165.1prot_M-pyrifera_M_contig100733.165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100733 45..591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.6999362-CDS-M-pyrifera_M_contig100733:44..2021622815504.6999362-CDS-M-pyrifera_M_contig100733:44..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 45..202 +
1692277441.309456-CDS-M-pyrifera_M_contig100733:44..2021692277441.309456-CDS-M-pyrifera_M_contig100733:44..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 45..202 +
1622815504.7145717-CDS-M-pyrifera_M_contig100733:273..4481622815504.7145717-CDS-M-pyrifera_M_contig100733:273..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 274..448 +
1692277441.320494-CDS-M-pyrifera_M_contig100733:273..4481692277441.320494-CDS-M-pyrifera_M_contig100733:273..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 274..448 +
1622815504.7255774-CDS-M-pyrifera_M_contig100733:513..5911622815504.7255774-CDS-M-pyrifera_M_contig100733:513..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 514..591 +
1692277441.3292825-CDS-M-pyrifera_M_contig100733:513..5911692277441.3292825-CDS-M-pyrifera_M_contig100733:513..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100733 514..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100733.165.1

>prot_M-pyrifera_M_contig100733.165.1 ID=prot_M-pyrifera_M_contig100733.165.1|Name=mRNA_M-pyrifera_M_contig100733.165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
CVNSAPHPLSRLAFASGNYSIFVLERDAAGYMQLRATLYGHKEEVKALSF
NPTDRNMLLSGGSDGMLVWDVDGKKLLMTVNVTTRPKDSHESDVECFCWA
HEGSTLITGSKDTNVKIWDVARGFTLLETVHGHKSAV
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mRNA from alignment at M-pyrifera_M_contig100733:45..591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100733.165.1 ID=mRNA_M-pyrifera_M_contig100733.165.1|Name=mRNA_M-pyrifera_M_contig100733.165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=547bp|location=Sequence derived from alignment at M-pyrifera_M_contig100733:45..591+ (Macrocystis pyrifera P11B4 male)
TGTGTTAACAGCGCGCCCCACCCGCTGTCCAGGCTGGCGTTCGCGTCTGG CAACTACAGCATCTTCGTGTTGGAGCGCGATGCGGCTGGGTACATGCAGC TTCGCGCCACACTGTACGGTCACAAGGAGGAGGTCAAGGCGCTGTCGTTC AACCCCACGTGCGATGCGCCTCGAGCGCTCCGTGCAGCGGCGCAGGGCCC CTGACGCGTCCGCCCTTCTCTTCCCGCAGCGATCGCAACATGCTGCTGAG CGGCGGCTCGGACGGGATGCTGGTGTGGGACGTGGACGGCAAGAAGCTGT TGATGACGGTGAACGTGACGACGAGGCCAAAGGACTCGCACGAGTCTGAT GTGGAGTGCTTCTGCTGGGCGCACGAGGGTAGCACGCTCATCACCGGCTC CAAGGTGTGTGGGTGTTCGCGTGGCCGCAGACGTAGCGCGGTTTCTGACG TGATGGGGTGGTTGTGCAGGACACGAACGTGAAGATTTGGGACGTGGCTC GTGGATTCACGCTCTTGGAGACTGTCCATGGGCACAAGAGTGCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100733:45..591+

>mRNA_M-pyrifera_M_contig100733.165.1 ID=mRNA_M-pyrifera_M_contig100733.165.1|Name=mRNA_M-pyrifera_M_contig100733.165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig100733:45..591+ (Macrocystis pyrifera P11B4 male)
TGTGTTAACAGCGCGCCCCACCCGCTGTCCAGGCTGGCGTTCGCGTCTGG
CAACTACAGCATCTTCGTGTTGGAGCGCGATGCGGCTGGGTACATGCAGC
TTCGCGCCACACTGTACGGTCACAAGGAGGAGGTCAAGGCGCTGTCGTTC
AACCCCACTGTGTTAACAGCGCGCCCCACCCGCTGTCCAGGCTGGCGTTC
GCGTCTGGCAACTACAGCATCTTCGTGTTGGAGCGCGATGCGGCTGGGTA
CATGCAGCTTCGCGCCACACTGTACGGTCACAAGGAGGAGGTCAAGGCGC
TGTCGTTCAACCCCACCGATCGCAACATGCTGCTGAGCGGCGGCTCGGAC
GGGATGCTGGTGTGGGACGTGGACGGCAAGAAGCTGTTGATGACGGTGAA
CGTGACGACGAGGCCAAAGGACTCGCACGAGTCTGATGTGGAGTGCTTCT
GCTGGGCGCACGAGGGTAGCACGCTCATCACCGGCTCCAAGCGATCGCAA
CATGCTGCTGAGCGGCGGCTCGGACGGGATGCTGGTGTGGGACGTGGACG
GCAAGAAGCTGTTGATGACGGTGAACGTGACGACGAGGCCAAAGGACTCG
CACGAGTCTGATGTGGAGTGCTTCTGCTGGGCGCACGAGGGTAGCACGCT
CATCACCGGCTCCAAGGACACGAACGTGAAGATTTGGGACGTGGCTCGTG
GATTCACGCTCTTGGAGACTGTCCATGGGCACAAGAGTGCAGTGGACACG
AACGTGAAGATTTGGGACGTGGCTCGTGGATTCACGCTCTTGGAGACTGT
CCATGGGCACAAGAGTGCAGTG
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