mRNA_M-pyrifera_M_contig68067.16407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68067.16407.1
Unique NamemRNA_M-pyrifera_M_contig68067.16407.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A517ZWH2_9PLAN (HTH iclR-type domain-containing protein n=4 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZWH2_9PLAN)

HSP 1 Score: 230 bits (586), Expect = 7.220e-67
Identity = 126/351 (35.90%), Postives = 186/351 (52.99%), Query Frame = 1
Query:    1 LLDLYSGKCEDICVLINNRELN---DGHVRSEASIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEFPLINGKHERLLR---EFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLL 1035
            LL   SGK     +++  R       G+   + S+VG   NPPP + VVW  DAT D + ++ +VG  V   TPDG +E     VQ+PRD+TRR S   V  ++RG++A  P   RIG+I H  H++ ++ +      R+ +  YFG G++R+SN W+  CDL+IV GTPR+PP A+  HL++ G++  A   P W  I W G     +   V+++GY +  WR A  +LV A + QA GRGRG L  G  V+V+S + CG  L  S+S   ++N     +L    E   EN      P   I  +G   V+T +L+   G +    R     LE  G++ + G+R GW L
Sbjct:  243 LLTAASGKLHLAAIIVERRFHKGGGQGNAYLKKSVVGVIDNPPPTNCVVWINDATADTEHVEAIVGHAVHQATPDGHIELRKKAVQIPRDITRRTSAKTVRGLIRGVMADRPQFRRIGIIGHSTHMSVLKKLGAGFDERIVKTSYFGSGEERSSNDWHHKCDLIIVAGTPRIPPAAIAKHLVQIGEMSAATCEPEWGVIYWHGETESHEPTKVNSRGYKNEAWRRAHQDLVRAQIVQATGRGRGILETGCEVLVLSDEECGLPL--SDSGVEILNDASVAILNALSELTTEN------PNKYI--LGKPVVSTGQLAETTGLSRSRCRDLLRDLERRGLVQKIGERSGWRL 583          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A5C5WPI6_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5WPI6_9PLAN)

HSP 1 Score: 221 bits (562), Expect = 1.350e-65
Identity = 128/338 (37.87%), Postives = 186/338 (55.03%), Query Frame = 1
Query:   91 SIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWD---------------GRNA----HGKNVPVDT---KGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEFPLINGKHERLLREFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLLS 1038
            S++G   N PP    VWF DATL A+R+  +V + V D TP+G++       Q  RDVTR+ S  +  AI+RG++A   D  R+G+I HRP ++ +  +  P   RV +  YFG G++R+SN+WYQ CDL++V+GTPRVPP A+K +L++  + EVA     W D+ W                GR+     H +   V T   +GY  P WR A  +LV A L QA GRGR  L DG  VVVVS   CG T+I  ++  P +N    ++ RE      + P +     E++G   V++ E++ RL  +   VR     LES  ++ R+GQRGGW ++
Sbjct:   25 SVIGVRENVPPSGITVWFNDATLTAERLTSIVKRPVIDGTPEGRMRQRKQSRQYVRDVTRQTSRDRARAILRGLLAEYQDHPRVGLITHRPLLSVLNELGPPFQDRVVKSTYFGSGEERSSNAWYQECDLILVLGTPRVPPQAIKDYLVQVDEQEVACAESVWGDVLWQALTTNRETNHDDDDIGRDVAGDEHTETTEVKTFSGRGYHDPRWREAHRDLVRAQLVQAIGRGRTVLEDGCDVVVVSSGECGLTVI--DAPVPYLNDAAMQVYREVQQLTMENPNK-----ESLGKTIVSSSEIAQRLDLSTVRVRELLRTLESFSLVQRHGQRGGWSIA 355          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A518H831_9BACT (PriCT_1 domain-containing protein n=2 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518H831_9BACT)

HSP 1 Score: 225 bits (573), Expect = 5.410e-63
Identity = 136/351 (38.75%), Postives = 194/351 (55.27%), Query Frame = 1
Query:   19 GKCEDICVLINNR--ELNDGHVRSEA----SIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLE-PVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEFPLINGKHERLL---REFLLENRDRPQRPESLIENIGFVSVTTKELSARLGE-NERTVRRWCNYLESTGILNRNGQRGGWLLS 1038
            G+   +CV++ +   +  DG          ++VG  +  PPE AV WF DAT D   ++ ++G+ V+D TP G+ E  V PV     DVT++ S   V  +VRG+IA +PD  ++GVI HR H+ A+ ++      R+ R  YF  G+DRASNSW   CDL++V+GTPRVPP AV+  L+R G+++ A     W + +W+G+ A G  + VD  GY  P WR+  + LV ASL QA GRGRG    G+PVVVVS +  G  L  S    P I     R     RE    N        +  + +G ++VT  EL+  LG+  ER VR    +L   G+L + G+RGGW L+
Sbjct:  568 GELAHLCVVVEDTYTKAKDGETGGRRDYHKALVGVWKVDPPEGAVAWFEDATGDRALLEEMLGRPVQDRTPAGRPEYRVPPVQYTSADVTQKTSENVVRGLVRGLIAGHPDARKVGVITHRGHLAALESLEPSWSSRIARKEYFRSGKDRASNSWMD-CDLILVLGTPRVPPAAVRDWLVRTGRIDAAGKDGGWGNRRWEGKAAEGSLIRVDGHGYADPSWRSMNNSLVRASLLQAVGRGRGVTEQGVPVVVVSDENLGLPL--SAIPVPEIKDSEARTFSAFRELTAIN--------AKYDIVGEIAVTAAELARHLGDVKERQVRNHLTHLTQLGLLAKKGERGGWTLA 907          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A356AAL6_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356AAL6_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 5.090e-62
Identity = 120/348 (34.48%), Postives = 188/348 (54.02%), Query Frame = 1
Query:    1 LLDLYSGKCEDICVLINNRE---LNDGHVRSEASIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEFPLINGKHERLLREFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLL 1035
            +L  ++G+ E++ +L+       L  G  ++    VG   N PP   VVW  DAT D + ++ L+G ++ D TP+G +  +H   Q  RD+TR+ S  ++ A VRG++ +  +  RIG+I H   ++A+  + D  L RV ++ +FG G +R+SN+W+  CDL++V+GTPRVPP  V   L + G+ E A + P W  I W GR   G     + +GY    W  A   LV ASL QA GRGRG L +G  V+V+S D CG  +I  +   P +  +      +  + N         ++EN+   ++++ EL+      ERTV+     LE  G+++RNG R GW L
Sbjct:  242 VLAAFNGRLEEVMILVTEHHVKGLPQGVTQTHKECVGVIHNNPPAGCVVWINDATADREFLENLIGTQIHDQTPEGMIPTLHQAHQYVRDITRKTSRKRLQAYVRGLLCKYRNKQRIGLITHSNLLSAIEQLEDKFLNRVVKMTHFGSGDERSSNAWHNDCDLILVLGTPRVPPNTVMTLLTQVGQSEAACIIPKWDVIHWYGRTTAGVEKKFEGRGYYDKTWMRAHQSLVRASLVQAVGRGRGILENGCDVIVLSSDECGLKVI--DESVPALGHQLHAFYGQ--IRNLCAINSKIYIMENL---ALSSSELAKLTDLPERTVQYNLKQLEELGLVHRNGPRSGWKL 582          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A3A0DDA9_9BACT (DUF3854 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DDA9_9BACT)

HSP 1 Score: 213 bits (541), Expect = 2.840e-59
Identity = 129/363 (35.54%), Postives = 183/363 (50.41%), Query Frame = 1
Query:    4 LDLYSGKCEDICVLINNRELNDGHVRSEASIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIAD-PLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCG------PTLIASESEFPLINGK--HERLL------------REFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGW 1029
            LDL +G+  D+ V ++  +  +G       IV   +   P +A VW  DAT +A  I IL G+EV D TPDG+L+ +H V+QV  DVT+R +   V+ I+  I+ R PD  R+GVICH+ H  A+   A      R+ +V YF  G+ R SN W   CDLL+ IGTPRVPP  ++A L++ GKL  A     W    W GR+  G+ + + T+ Y    W  A   +V A L QA GR R     GIP VVVS +P G      P L  +E++   +  +   ERL              E+L +       P S    +    + + +++A LG++ R VRR    L     +   GQRGGW
Sbjct:  366 LDLAAGRATDLAVFVDTVKRRNGEETVHREIVAIRKTDLPANATVWISDATANADEIGILTGREVIDATPDGRLDRLHRVLQVSCDVTKRTNAETVSRILSAILDRFPDRRRVGVICHKCHKEAIEQFAARDATARIAKVDYFRSGESRGSNDWQHECDLLVCIGTPRVPPETLRARLVQWGKLAAACRDREWVRDWWSGRDEAGRRITIKTRAYRDHEWYTAHRAIVHAELIQAVGRARSNCEGGIPAVVVSAEPLGFPLWELPVLTPTEADVLAVVRRLADERLTPDAAAGAKGDTANEYLSDFAPCAPNP-SPSAPVAISPLNSADIAAALGKDRRWVRRVLVSLREKERVQMIGQRGGW 727          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: UPI001EE83D42 (hypothetical protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE83D42)

HSP 1 Score: 194 bits (493), Expect = 3.240e-53
Identity = 108/314 (34.39%), Postives = 166/314 (52.87%), Query Frame = 1
Query:  100 GTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEFPLINGKHER---LLREFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWL 1032
            G  RN PP    VWF DAT D   ++ L+   V D TP G +       Q  RD+TR+  PA + +++RG++ +  D   +GVI H   + A+  +      R+ +  Y+G G +R+SN WY+ CDL++V+GTPRVP   V  +L+R G+ + A  +  W +I W      G+++ +  +GY  P+W  A   +V A++ QA GRGRG L DG  V+V+S + CG  +I      P +N +  R   L++E    N         LI N   ++V+T E++       RT R   + LES  +++R G R GWL
Sbjct:  278 GVVRNDPPAGKTVWFSDATADQDTLESLLDGRVIDATPGGVVPLQKKAEQYHRDITRKTQPAVLRSLIRGLLCKYLDRIAVGVITHSNLLPAIEKLEPEFRDRIIKTSYYGSGDERSSNDWYRHCDLILVLGTPRVPATTVIEYLIRIGEWDAACAASEWGEIYWHAETTDGEDLKLSGRGYYDPLWMTAHRAIVRANVVQAIGRGRGILKDGCDVIVLSSEECGLRVINDRP--PTMNDQLVRVWGLIQELTARNL-------KLI-NYTKLAVSTSEVADAAHVPLRTARYLLSELESLNLIHREGPRSGWL 581          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A2G1W801_9BACT (DUF3854 domain-containing protein n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W801_9BACT)

HSP 1 Score: 197 bits (500), Expect = 7.980e-53
Identity = 131/368 (35.60%), Postives = 192/368 (52.17%), Query Frame = 1
Query:   10 LYSGKCEDICVLINNRELNDGHVRSEASIVGTARNPPPEDAVVWFCDATLDAQRIDILVGQ-EVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHG-KLEVAKLSPS--WTDIKWDGRNAHGKNVPVDTKGY-DHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSCDPCGPTLIASESEF-PLINGKHERL--LREFLLENR-DRPQRPESLIEN---------------IGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLLSE 1041
            L SG+  ++ V ++      G  ++  SI    +   P D  +WF DAT D   ++ L+G  +VRD TP G LE  HP +QVP D+T+  SP  VAAIV G++   P   RIGVICHR H++AV+ +A  +     +  +F  G+ R SN W   CD ++V+GTPRVPP  ++  LL+ G    +AK      W    W GR   G  + V T  Y DH   RA C ++V + + Q+AGRGR     GIPVVV++ +  G  ++  ES+F PL   + E L  L+  LL  +     R E+L E                +G  SV++  +++ +G ++R VR+    L     + R GQRGGW L +
Sbjct:  539 LASGEICELVVRVDEVFQRGGDRKTRTSICAVRQTKIPSDVAIWFADATADRSEVESLLGGLQVRDRTPVGSLEAKHPSLQVPVDITKGTSPKNVAAIVTGMLESLPY-QRIGVICHREHISAVKEVAGVI-----QASHFRGGESRGSNEWLSECDCMLVLGTPRVPPHVIRDRLLKLGLPAAMAKSDEEVRWGKDYWSGRTTRGNRITVTTLAYRDHDWHRAHC-QIVRSEILQSAGRGRSVTETGIPVVVLTTEDMGLPIL--ESKFSPLTESQREILESLKFHLLRKQVSSVVRGETLSEPSPTGASSEQTPTIYIVGNGSVSSSTIASAVGSSDRYVRKVLKELSERNFVKRIGQRGGWTLDQ 897          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A1P8WBW2_9PLAN (DUF3854 domain-containing protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WBW2_9PLAN)

HSP 1 Score: 165 bits (418), Expect = 9.880e-42
Identity = 122/343 (35.57%), Postives = 165/343 (48.10%), Query Frame = 1
Query:   94 IVGTARNPPPEDAVVWFCDATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAIVRGIIARNPDCHRIGVICHRPHVT--AVRNIADPLLGRVRRVGYFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKL---SPSW-------TDIKWDGRNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVVVVSC------DP----CGPTLIASE------SEFPLINGKHERLLREFLLENRDRPQRPESLIENIGFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLLS 1038
            +VG    P P  A +   DAT   + +     +E+ D+TP+     ++P VQ+PRDVTRR S   VA  +RGII   P   +IG+I H+ H+    + ++ +    RV    +FG  + R SN WY+ CD +IV+GTPRV P A++ HL+R  K   A++   +  W       T   W G++  G+   V T  Y    W  A  +LV A LKQA GR RG L DGI   VVS       DP     G    AS+      S+FPL   K   +     L+N D              V V T+EL+A LG  E T R     LE  G + R GQR GW+ S
Sbjct:  595 LVGNCATPLPRRAKIVINDATASLKSLAAATEREIHDITPEAIPRTINPTVQIPRDVTRRASRDSVADTLRGIIHDIPY-QKIGLITHKNHLDDGLIHSLGEAYRDRVSTFDWFGGTKSRGSNEWYKDCDCMIVLGTPRVAPAAIREHLIRLNKPWAARIRAAAAGWPTRENGGTLDAWLGKDESGQPRVVRTGHYADHDWHDAYTDLVTAQLKQAIGRARGCLTDGIRCYVVSTENICCSDPQTSLMGAGAFASDGPQAFLSKFPLPPLKLADVAILDHLKNGD------------SSVPVPTRELAAVLGVAESTCRERLQKLEKAGRVRRVGQRKGWIAS 924          
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Match: A0A356A7L1_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A7L1_9PLAN)

HSP 1 Score: 70.9 bits (172), Expect = 3.870e-12
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  424 YFGEGQDRASNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDGRNAHG 615
            Y+G G +R+SN W+++CDLL+++GTPR+P   V  HL+R G+L  A     W DI W  +   G
Sbjct:    3 YYGSGDERSSNVWHESCDLLLILGTPRIPTETVVEHLIRIGELRAACEPSEWGDIYWHCQTTSG 66          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68067.16407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A517ZWH2_9PLAN7.220e-6735.90HTH iclR-type domain-containing protein n=4 Tax=Sy... [more]
A0A5C5WPI6_9PLAN1.350e-6537.87Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A518H831_9BACT5.410e-6338.75PriCT_1 domain-containing protein n=2 Tax=Tautonia... [more]
A0A356AAL6_9PLAN5.090e-6234.48Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3A0DDA9_9BACT2.840e-5935.54DUF3854 domain-containing protein n=1 Tax=Planctom... [more]
UPI001EE83D423.240e-5334.39hypothetical protein n=1 Tax=Rubinisphaera sp. ICM... [more]
A0A2G1W801_9BACT7.980e-5335.60DUF3854 domain-containing protein n=2 Tax=Rhodopir... [more]
A0A1P8WBW2_9PLAN9.880e-4235.57DUF3854 domain-containing protein n=1 Tax=Fuerstie... [more]
A0A356A7L1_9PLAN3.870e-1243.75Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68067contigM-pyrifera_M_contig68067:92..1132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1041
Cds size1041
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816571.728458-CDS-M-pyrifera_M_contig68067:91..11321622816571.728458-CDS-M-pyrifera_M_contig68067:91..1132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68067 92..1132 -
1692278053.6747007-CDS-M-pyrifera_M_contig68067:91..11321692278053.6747007-CDS-M-pyrifera_M_contig68067:91..1132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68067 92..1132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68067.16407.1prot_M-pyrifera_M_contig68067.16407.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68067 92..1132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68067.16407.1

>prot_M-pyrifera_M_contig68067.16407.1 ID=prot_M-pyrifera_M_contig68067.16407.1|Name=mRNA_M-pyrifera_M_contig68067.16407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=347bp
LLDLYSGKCEDICVLINNRELNDGHVRSEASIVGTARNPPPEDAVVWFCD
ATLDAQRIDILVGQEVRDVTPDGQLEPVHPVVQVPRDVTRRKSPAKVAAI
VRGIIARNPDCHRIGVICHRPHVTAVRNIADPLLGRVRRVGYFGEGQDRA
SNSWYQTCDLLIVIGTPRVPPPAVKAHLLRHGKLEVAKLSPSWTDIKWDG
RNAHGKNVPVDTKGYDHPVWRAACDELVGASLKQAAGRGRGYLPDGIPVV
VVSCDPCGPTLIASESEFPLINGKHERLLREFLLENRDRPQRPESLIENI
GFVSVTTKELSARLGENERTVRRWCNYLESTGILNRNGQRGGWLLSE
back to top

mRNA from alignment at M-pyrifera_M_contig68067:92..1132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68067.16407.1 ID=mRNA_M-pyrifera_M_contig68067.16407.1|Name=mRNA_M-pyrifera_M_contig68067.16407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at M-pyrifera_M_contig68067:92..1132- (Macrocystis pyrifera P11B4 male)
CTCCTTGATCTGTATTCCGGCAAGTGTGAAGACATTTGTGTCCTCATCAA CAATCGAGAACTGAATGATGGGCACGTGCGGTCTGAGGCGTCCATCGTCG GAACGGCGCGAAATCCGCCACCGGAGGATGCGGTTGTCTGGTTTTGCGAT GCCACGTTGGACGCACAGAGGATCGACATTCTAGTCGGCCAGGAAGTACG GGATGTCACTCCGGACGGTCAGTTGGAGCCAGTGCATCCAGTTGTGCAAG TGCCCCGTGATGTGACTCGCCGGAAATCACCGGCGAAAGTGGCAGCCATT GTGCGTGGAATTATCGCCCGGAATCCAGATTGTCATCGCATCGGGGTGAT CTGTCACCGACCTCACGTTACAGCAGTTAGGAACATTGCAGATCCGCTTC TTGGCAGGGTCAGACGAGTGGGATACTTCGGTGAAGGACAAGATCGTGCT TCCAACTCGTGGTATCAGACGTGCGATCTGCTCATCGTCATTGGGACTCC ACGCGTACCACCGCCTGCAGTGAAGGCCCATCTCCTTAGGCATGGCAAGC TTGAGGTCGCAAAGCTGTCGCCCTCCTGGACGGACATCAAATGGGACGGC CGGAACGCTCATGGTAAGAACGTACCAGTTGACACGAAGGGATACGATCA TCCTGTGTGGAGAGCAGCATGCGATGAGTTAGTCGGAGCATCGCTAAAGC AAGCAGCCGGACGTGGACGTGGTTATCTCCCTGATGGCATACCCGTCGTT GTCGTGAGCTGCGACCCATGCGGGCCAACTCTCATAGCATCCGAATCTGA ATTCCCGCTCATCAACGGCAAGCACGAGCGTCTTCTGAGGGAGTTTTTAC TTGAGAATCGCGACAGACCACAACGGCCAGAATCCCTAATAGAGAATATA GGGTTTGTGTCCGTTACGACCAAAGAGCTTTCAGCAAGGCTGGGAGAGAA CGAACGAACTGTACGGAGATGGTGCAACTATCTGGAATCAACCGGAATCC TGAATCGGAACGGGCAGCGTGGAGGCTGGTTGCTGTCCGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig68067:92..1132-

>mRNA_M-pyrifera_M_contig68067.16407.1 ID=mRNA_M-pyrifera_M_contig68067.16407.1|Name=mRNA_M-pyrifera_M_contig68067.16407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2082bp|location=Sequence derived from alignment at M-pyrifera_M_contig68067:92..1132- (Macrocystis pyrifera P11B4 male)
CTCCTTGATCTGTATTCCGGCAAGTGTGAAGACATTTGTGTCCTCATCAA
CAATCGAGAACTGAATGATGGGCACGTGCGGTCTGAGGCGTCCATCGTCG
GAACGGCGCGAAATCCGCCACCGGAGGATGCGGTTGTCTGGTTTTGCGAT
GCCACGTTGGACGCACAGAGGATCGACATTCTAGTCGGCCAGGAAGTACG
GGATGTCACTCCGGACGGTCAGTTGGAGCCAGTGCATCCAGTTGTGCAAG
TGCCCCGTGATGTGACTCGCCGGAAATCACCGGCGAAAGTGGCAGCCATT
GTGCGTGGAATTATCGCCCGGAATCCAGATTGTCATCGCATCGGGGTGAT
CTGTCACCGACCTCACGTTACAGCAGTTAGGAACATTGCAGATCCGCTTC
TTGGCAGGGTCAGACGAGTGGGATACTTCGGTGAAGGACAAGATCGTGCT
TCCAACTCGTGGTATCAGACGTGCGATCTGCTCATCGTCATTGGGACTCC
ACGCGTACCACCGCCTGCAGTGAAGGCCCATCTCCTTAGGCATGGCAAGC
TTGAGGTCGCAAAGCTGTCGCCCTCCTGGACGGACATCAAATGGGACGGC
CGGAACGCTCATGGTAAGAACGTACCAGTTGACACGAAGGGATACGATCA
TCCTGTGTGGAGAGCAGCATGCGATGAGTTAGTCGGAGCATCGCTAAAGC
AAGCAGCCGGACGTGGACGTGGTTATCTCCCTGATGGCATACCCGTCGTT
GTCGTGAGCTGCGACCCATGCGGGCCAACTCTCATAGCATCCGAATCTGA
ATTCCCGCTCATCAACGGCAAGCACGAGCGTCTTCTGAGGGAGTTTTTAC
TTGAGAATCGCGACAGACCACAACGGCCAGAATCCCTAATAGAGAATATA
GGGTTTGTGTCCGTTACGACCAAAGAGCTTTCAGCAAGGCTGGGAGAGAA
CGAACGAACTGTACGGAGATGGTGCAACTATCTGGAATCAACCGGAATCC
TGAATCGGAACGGGCAGCGTGGAGGCTGGTTGCTGTCCGAACTCCTTGAT
CTGTATTCCGGCAAGTGTGAAGACATTTGTGTCCTCATCAACAATCGAGA
ACTGAATGATGGGCACGTGCGGTCTGAGGCGTCCATCGTCGGAACGGCGC
GAAATCCGCCACCGGAGGATGCGGTTGTCTGGTTTTGCGATGCCACGTTG
GACGCACAGAGGATCGACATTCTAGTCGGCCAGGAAGTACGGGATGTCAC
TCCGGACGGTCAGTTGGAGCCAGTGCATCCAGTTGTGCAAGTGCCCCGTG
ATGTGACTCGCCGGAAATCACCGGCGAAAGTGGCAGCCATTGTGCGTGGA
ATTATCGCCCGGAATCCAGATTGTCATCGCATCGGGGTGATCTGTCACCG
ACCTCACGTTACAGCAGTTAGGAACATTGCAGATCCGCTTCTTGGCAGGG
TCAGACGAGTGGGATACTTCGGTGAAGGACAAGATCGTGCTTCCAACTCG
TGGTATCAGACGTGCGATCTGCTCATCGTCATTGGGACTCCACGCGTACC
ACCGCCTGCAGTGAAGGCCCATCTCCTTAGGCATGGCAAGCTTGAGGTCG
CAAAGCTGTCGCCCTCCTGGACGGACATCAAATGGGACGGCCGGAACGCT
CATGGTAAGAACGTACCAGTTGACACGAAGGGATACGATCATCCTGTGTG
GAGAGCAGCATGCGATGAGTTAGTCGGAGCATCGCTAAAGCAAGCAGCCG
GACGTGGACGTGGTTATCTCCCTGATGGCATACCCGTCGTTGTCGTGAGC
TGCGACCCATGCGGGCCAACTCTCATAGCATCCGAATCTGAATTCCCGCT
CATCAACGGCAAGCACGAGCGTCTTCTGAGGGAGTTTTTACTTGAGAATC
GCGACAGACCACAACGGCCAGAATCCCTAATAGAGAATATAGGGTTTGTG
TCCGTTACGACCAAAGAGCTTTCAGCAAGGCTGGGAGAGAACGAACGAAC
TGTACGGAGATGGTGCAACTATCTGGAATCAACCGGAATCCTGAATCGGA
ACGGGCAGCGTGGAGGCTGGTTGCTGTCCGAA
back to top