mRNA_M-pyrifera_M_contig67713.16340.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig67713.16340.1
Unique NamemRNA_M-pyrifera_M_contig67713.16340.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig67713.16340.1 vs. uniprot
Match: A0A485L8C5_9STRA (Aste57867_16290 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8C5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.500e-7
Identity = 70/251 (27.89%), Postives = 107/251 (42.63%), Query Frame = 1 
Query:    1 LGAISHETVREFLGRTFEGGGMVLVGANIAHDVLEDLADTFFLSAPRGQGVEAAQGAWEGGVFVDADAGSSTTHVAVAFP--GAPVAQGAVQAVASEILGSRPRSGKGCGSPILASASFPAASAFAATYHATGLFGVQARVNSNDVQPALQGIAGALKQLAAGEFNEAELSRAKAALSVARAASLDRTRGAAHDLGYAALFGQQEATGNSVKAIQAVSKDAVATFAQNALKQHPAVGIVGNPYATPRYDKI 747
            L  ++ + +  F         +VLVG NIAH  L D+A+T+F + P G         + GG      A S+  +VA+ F   GA   + A  A   E L ++ R+G+             AA+ F ATY    L G+     + D       +    +  A    + AEL  AK A  +  ++ ++   GA  +L  AA    Q+A  +  + + AVS   V   A+  L   P +  VG+  A PRYD I
Sbjct:  204 LSKLNKKHLEAFYTENVTAQNLVLVGRNIAHSTLTDVANTYFSTLPTGTKTLTTPAVYVGGEHRTV-AASAHAYVALGFSAGGALTGKDAHTAHVLEHLLNQ-RAGR-------------AATGFKATYSDAALVGLSGVAKAGDASALTFNLLKEFQSFAQAPISAAELEGAKKASGLCYSSLVESKDGALAELAKAAKT--QKADSSIFQGLAAVSSSDVQKLAEKLLASKPVLASVGDVSAVPRYDDI 437
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BLAST of mRNA_M-pyrifera_M_contig67713.16340.1 vs. uniprot
Match: A0A8H7RQ84_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RQ84_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-6
Identity = 74/255 (29.02%), Postives = 111/255 (43.53%), Query Frame = 1 
Query:   10 ISHETVREFLGRTFEGGGMVLVGANIAHDVLEDLADTFFLSAPRGQGVEAAQGAWEGGVFVDADAGSSTTHVAVAFPGAPV--AQGAVQAVASEILGSRPRSGKGCGSPILASASFPAAS-----AFAATYHATGLFGVQARVNSNDVQPALQGIAGALKQLAAGEFNEAELSRAKAALSVARAASLDRTRGAAHDLGYAAL-FGQQEATGNSVKAIQAVSKDAVATFAQNALKQHPAVGIVGNPYATPRYDKIA 750
            I+++ V+ +    F    + LVG  I H VL++LA+T+F + P G+ +      + GG     +  S   +V +AF GA    A+ A   V    LG         GS ILA A+   A      AF   Y   GLFG+Q    + +   A+   A  LK  A G  +E + SRA A    A  A  +        LG  AL  G+  +   SV AI+ V+   +A  A+  LK       +G+  + P  D ++
Sbjct:  187 INNDAVKAYAQELFTQDNIALVGTGIDHQVLQNLAETYF-NLPSGK-LSLTASTYYGGESRIENVSSKGEYV-LAFEGAAADSAEFAALQVLRHALGGEVNVKHTAGSGILAQAAAKFAEGTEIKAFNLGYSDAGLFGLQVSAATAETGAAISAAAEQLKAAAKGLSSE-DFSRAVAQAKFAATAGFETRLDRLQTLGVQALRSGKYTSAAESVAAIEKVTTADIAQVAEKLLKSKTTTVALGDLTSLPYADSVS 437
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig67713.16340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A485L8C5_9STRA1.500e-727.89Aste57867_16290 protein n=1 Tax=Aphanomyces stella... [more]
A0A8H7RQ84_9FUNG5.240e-629.02Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig67713contigM-pyrifera_M_contig67713:493..1257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.9
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog90675.XP_010500794.1
KEGG koko:K01412,ko:K07393,ko:K21767
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005773,GO:0005774,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017076,GO:0019538,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034982,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0045275,GO:0046872,GO:0046907,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070011,GO:0070069,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGs37KI7@33090,3G8AB@35493,3HQFW@3699,COG0612@1,KOG2067@2759
EC1.8.5.7,3.4.24.64
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029,ko04812
Exons1
Model size765
Cds size765
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.5601933-CDS-M-pyrifera_M_contig67713:492..12571622816567.5601933-CDS-M-pyrifera_M_contig67713:492..1257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67713 493..1257 -
1692278051.1959724-CDS-M-pyrifera_M_contig67713:492..12571692278051.1959724-CDS-M-pyrifera_M_contig67713:492..1257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig67713 493..1257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig67713.16340.1prot_M-pyrifera_M_contig67713.16340.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig67713 493..1257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig67713.16340.1

>prot_M-pyrifera_M_contig67713.16340.1 ID=prot_M-pyrifera_M_contig67713.16340.1|Name=mRNA_M-pyrifera_M_contig67713.16340.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
LGAISHETVREFLGRTFEGGGMVLVGANIAHDVLEDLADTFFLSAPRGQG
VEAAQGAWEGGVFVDADAGSSTTHVAVAFPGAPVAQGAVQAVASEILGSR
PRSGKGCGSPILASASFPAASAFAATYHATGLFGVQARVNSNDVQPALQG
IAGALKQLAAGEFNEAELSRAKAALSVARAASLDRTRGAAHDLGYAALFG
QQEATGNSVKAIQAVSKDAVATFAQNALKQHPAVGIVGNPYATPRYDKIA
ALFH*
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mRNA from alignment at M-pyrifera_M_contig67713:493..1257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig67713.16340.1 ID=mRNA_M-pyrifera_M_contig67713.16340.1|Name=mRNA_M-pyrifera_M_contig67713.16340.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig67713:493..1257- (Macrocystis pyrifera P11B4 male)
CTCGGTGCCATTTCCCACGAAACCGTCCGTGAATTCCTGGGACGTACCTT
TGAAGGCGGAGGCATGGTGCTGGTGGGAGCAAACATTGCCCATGACGTGT
TGGAAGATCTGGCTGACACATTTTTCCTCTCAGCCCCACGCGGACAAGGA
GTGGAGGCGGCGCAAGGAGCATGGGAAGGGGGAGTGTTTGTGGATGCAGA
TGCTGGTTCATCCACCACCCACGTCGCTGTGGCATTCCCAGGAGCTCCGG
TAGCCCAGGGTGCAGTGCAAGCTGTGGCGAGTGAAATTTTGGGATCTCGA
CCTCGGTCCGGCAAAGGGTGTGGCAGTCCAATTCTCGCCTCTGCCTCCTT
CCCAGCGGCATCCGCCTTTGCTGCAACCTACCACGCCACGGGGCTCTTCG
GGGTGCAAGCCAGAGTGAACTCCAACGATGTTCAACCAGCGCTCCAAGGC
ATTGCGGGTGCTCTCAAGCAGCTCGCAGCTGGAGAATTCAACGAAGCCGA
ACTCAGCAGGGCAAAGGCTGCGCTTTCCGTCGCGAGAGCTGCCTCCCTCG
ACAGAACCAGGGGCGCAGCACACGACCTCGGCTACGCGGCGCTCTTCGGA
CAGCAGGAGGCCACTGGAAACTCCGTCAAAGCCATCCAAGCAGTCTCCAA
GGACGCTGTCGCCACCTTCGCCCAAAACGCACTCAAACAACACCCAGCCG
TCGGAATCGTTGGAAACCCCTACGCCACACCTCGCTACGACAAAATCGCA
GCACTCTTCCACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig67713:493..1257-

>mRNA_M-pyrifera_M_contig67713.16340.1 ID=mRNA_M-pyrifera_M_contig67713.16340.1|Name=mRNA_M-pyrifera_M_contig67713.16340.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig67713:493..1257- (Macrocystis pyrifera P11B4 male)
CTCGGTGCCATTTCCCACGAAACCGTCCGTGAATTCCTGGGACGTACCTT
TGAAGGCGGAGGCATGGTGCTGGTGGGAGCAAACATTGCCCATGACGTGT
TGGAAGATCTGGCTGACACATTTTTCCTCTCAGCCCCACGCGGACAAGGA
GTGGAGGCGGCGCAAGGAGCATGGGAAGGGGGAGTGTTTGTGGATGCAGA
TGCTGGTTCATCCACCACCCACGTCGCTGTGGCATTCCCAGGAGCTCCGG
TAGCCCAGGGTGCAGTGCAAGCTGTGGCGAGTGAAATTTTGGGATCTCGA
CCTCGGTCCGGCAAAGGGTGTGGCAGTCCAATTCTCGCCTCTGCCTCCTT
CCCAGCGGCATCCGCCTTTGCTGCAACCTACCACGCCACGGGGCTCTTCG
GGGTGCAAGCCAGAGTGAACTCCAACGATGTTCAACCAGCGCTCCAAGGC
ATTGCGGGTGCTCTCAAGCAGCTCGCAGCTGGAGAATTCAACGAAGCCGA
ACTCAGCAGGGCAAAGGCTGCGCTTTCCGTCGCGAGAGCTGCCTCCCTCG
ACAGAACCAGGGGCGCAGCACACGACCTCGGCTACGCGGCGCTCTTCGGA
CAGCAGGAGGCCACTGGAAACTCCGTCAAAGCCATCCAAGCAGTCTCCAA
GGACGCTGTCGCCACCTTCGCCCAAAACGCACTCAAACAACACCCAGCCG
TCGGAATCGTTGGAAACCCCTACGCCACACCTCGCTACGACAAAATCGCA
GCACTCTTCCACTAACTCGGTGCCATTTCCCACGAAACCGTCCGTGAATT
CCTGGGACGTACCTTTGAAGGCGGAGGCATGGTGCTGGTGGGAGCAAACA
TTGCCCATGACGTGTTGGAAGATCTGGCTGACACATTTTTCCTCTCAGCC
CCACGCGGACAAGGAGTGGAGGCGGCGCAAGGAGCATGGGAAGGGGGAGT
GTTTGTGGATGCAGATGCTGGTTCATCCACCACCCACGTCGCTGTGGCAT
TCCCAGGAGCTCCGGTAGCCCAGGGTGCAGTGCAAGCTGTGGCGAGTGAA
ATTTTGGGATCTCGACCTCGGTCCGGCAAAGGGTGTGGCAGTCCAATTCT
CGCCTCTGCCTCCTTCCCAGCGGCATCCGCCTTTGCTGCAACCTACCACG
CCACGGGGCTCTTCGGGGTGCAAGCCAGAGTGAACTCCAACGATGTTCAA
CCAGCGCTCCAAGGCATTGCGGGTGCTCTCAAGCAGCTCGCAGCTGGAGA
ATTCAACGAAGCCGAACTCAGCAGGGCAAAGGCTGCGCTTTCCGTCGCGA
GAGCTGCCTCCCTCGACAGAACCAGGGGCGCAGCACACGACCTCGGCTAC
GCGGCGCTCTTCGGACAGCAGGAGGCCACTGGAAACTCCGTCAAAGCCAT
CCAAGCAGTCTCCAAGGACGCTGTCGCCACCTTCGCCCAAAACGCACTCA
AACAACACCCAGCCGTCGGAATCGTTGGAAACCCCTACGCCACACCTCGC
TACGACAAAATCGCAGCACTCTTCCACTAA
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