mRNA_M-pyrifera_M_contig6712.16240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6712.16240.1
Unique NamemRNA_M-pyrifera_M_contig6712.16240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6712.16240.1 vs. uniprot
Match: A0A6H5KLQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.740e-58
Identity = 98/138 (71.01%), Postives = 116/138 (84.06%), Query Frame = 1 
Query:    1 DNTLLTLPPSPPLPSQHAVCTPRSGRKTLEGGARYEDGVVLVPDCRKLRQEVVRSTCMDPTGSIRPDYHAYAGAPIFVEGAPLGTFCVYLRRTLKDVGWGAHHTVILRGLADAASTEITRLRRMAQLDDAQ---RHRR 405
            D +L T+P    +  QHAVC PR GRK+L+GG RYEDGV+LVPDCRKLRQE+VRSTCMDP GS+RPDY AY GAPI+V+GAPLGTFCV+ RRTL+D+GW AHHT++LRGLADAA+TEI RL RMA+L+D Q   RHRR
Sbjct:  902 DTSLSTIPRRASM-CQHAVCAPRLGRKSLDGGVRYEDGVLLVPDCRKLRQEIVRSTCMDPAGSVRPDYVAYVGAPIYVDGAPLGTFCVFSRRTLRDLGWTAHHTIVLRGLADAAATEIVRLCRMAELEDRQEQPRHRR 1038
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BLAST of mRNA_M-pyrifera_M_contig6712.16240.1 vs. uniprot
Match: D7FXI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 8.120e-58
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = 1 
Query:    1 DNTLLTLPPSPPLPSQHAVCTPRSGRKTLEGGARYEDGVVLVPDCRKLRQEVVRSTCMDPTGSIRPDYHAYAGAPIFVEGAPLGTFCVYLRRTLKDVGWGAHHTVILRGLADAASTEITRLRRMAQLDDAQ---RHRR 405
            D +L T+P    +  QHAVC PR GRK+L+ G RYEDGV+LVPDCRKLRQE+VRSTCMDP GS+RPDY AY GAPI+V+GAPLGTFCV+ RRTLKD+GW AHHTV+LRGLADAA+TE+ RL RMA+L+D Q   RHRR
Sbjct:  874 DTSLSTIPRRASM-CQHAVCAPRLGRKSLDAGVRYEDGVLLVPDCRKLRQEIVRSTCMDPAGSVRPDYVAYVGAPIYVDGAPLGTFCVFSRRTLKDLGWTAHHTVVLRGLADAAATEMVRLCRMAELEDRQEQQRHRR 1010
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6712.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ0_9PHAE1.740e-5871.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXI9_ECTSI8.120e-5871.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6712contigM-pyrifera_M_contig6712:274..1808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6712.16240.1prot_M-pyrifera_M_contig6712.16240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6712 274..1808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816561.4600298-CDS-M-pyrifera_M_contig6712:273..4901622816561.4600298-CDS-M-pyrifera_M_contig6712:273..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 274..490 +
1692278047.6185613-CDS-M-pyrifera_M_contig6712:273..4901692278047.6185613-CDS-M-pyrifera_M_contig6712:273..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 274..490 +
1622816561.4735188-CDS-M-pyrifera_M_contig6712:1196..13301622816561.4735188-CDS-M-pyrifera_M_contig6712:1196..1330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 1197..1330 +
1692278047.6298292-CDS-M-pyrifera_M_contig6712:1196..13301692278047.6298292-CDS-M-pyrifera_M_contig6712:1196..1330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 1197..1330 +
1622816561.4883642-CDS-M-pyrifera_M_contig6712:1754..18081622816561.4883642-CDS-M-pyrifera_M_contig6712:1754..1808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 1755..1808 +
1692278047.6398542-CDS-M-pyrifera_M_contig6712:1754..18081692278047.6398542-CDS-M-pyrifera_M_contig6712:1754..1808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6712 1755..1808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6712.16240.1

>prot_M-pyrifera_M_contig6712.16240.1 ID=prot_M-pyrifera_M_contig6712.16240.1|Name=mRNA_M-pyrifera_M_contig6712.16240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
DNTLLTLPPSPPLPSQHAVCTPRSGRKTLEGGARYEDGVVLVPDCRKLRQ
EVVRSTCMDPTGSIRPDYHAYAGAPIFVEGAPLGTFCVYLRRTLKDVGWG
AHHTVILRGLADAASTEITRLRRMAQLDDAQRHRR
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mRNA from alignment at M-pyrifera_M_contig6712:274..1808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6712.16240.1 ID=mRNA_M-pyrifera_M_contig6712.16240.1|Name=mRNA_M-pyrifera_M_contig6712.16240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1535bp|location=Sequence derived from alignment at M-pyrifera_M_contig6712:274..1808+ (Macrocystis pyrifera P11B4 male)
GACAACACCCTCCTCACCCTCCCCCCCTCCCCTCCCCTCCCCTCGCAGCA
TGCCGTGTGCACCCCGCGGTCTGGGCGCAAGACGCTGGAAGGTGGCGCTC
GCTACGAAGACGGGGTGGTGCTGGTCCCGGACTGCCGTAAGCTGAGACAA
GAGGTCGTCCGGAGCACCTGCATGGACCCCACGGGTAGCATCCGGCCGGA
CTACCACGCCTATGCCGGTGCGTGCCTCTTCCGGTCAGGCCCAAGGAAAG
GACTCTGACTGTGTGTAGATGTGGTGTTGGTGTTGGTATTGGTAGCGTTG
GTGGTAGCGTTGGCGATGGTGGTGTTGGTGGTGTCTGTGGTGATGTTTGT
GGTGGTGTTTGTGGTGCTTGTTTTGGCGTTCATGTTGGCTGTGGTGGTCG
TGGCAGCGTTGGTGCTGGTGCTGGTCGTGCTTGTAGTGGGAGCGCGCCCG
AGAGCGGGTCGACATCTTTAGCAGGTGTTCACTCGGTGAGAGAAAAGGCG
TAGGGCAGGCTGGCTCTGGCTCTCTGACTCTAGTTTTTTGCTGATAGTTA
TGCACCAGGTAGGCGTGTCGAAGCAAGGCTGGACTGTCTCCCACGCTTGG
CCAGTCCCTCCCAGTATAGTGCGACTAGCCCCCCCCTGCACCTCCCCTTC
CCGAGGTTCCCCGTCACTCCCCCCTTTTTATTCAAATAAAAAACATCGGC
TGTGAGATCGAATATTTTACCTCTCTCTCTCCCTCCCTATAGTACCCCTT
TGACGCCCCCCCCCGGTTGGTGCAAACCCGACATGCTCCGCCCCGACATT
ATAGGGATGCGAGGGTCTATGGTCATACGACTACGGTCGCGTATGATAAT
GAGTACACCCCCCCCCCCCCCTCTCCCCGGCCGACGCCTGTATGTTGTCG
CTCTTTTTGTGCTCGATACACAGGGGCGCCCATCTTCGTCGAGGGGGCCC
CTCTGGGCACGTTTTGCGTCTACCTACGGCGAACTTTGAAGGATGTCGGC
TGGGGCGCACACCACACGGTGATCCTCAGAGGCCTCGCCGATGCGGCGTC
GACCGAGGTTAGTCGTGCCAACATGCAACAGCTTTATTCCTATCCTCCCT
TTACCTCCGCCATTGCCTCATACCGTATTTCGAGCCGAGGAACGGCCTCC
GCGAAGGGTGCGGCGGAGACGGCATGGTGTGGGTTCGGTGCCACGATTTC
GCACTATCGCCCTTAAGCTCATCGCCTTTCTGTTACCGTTAACCCATACC
TGGTAGTCATCTAGACATGCAGATACTATACGTCATCCGTTTTTTGTTCT
ATCGCCCTAAAGCTCATCGCCTTTCTGTTACCGTTAATCCATACCTGGTA
GTCATCTAGACACGCAGATACTATACGTCATCCGTTTTTTGTTGTCATTG
AAACTTTCCGCCATCCGTCCTCACCCCCCCCGTCTTGTCACGCCGATGCT
GCGCTGAACCTCGCGGTGCTATCCCTAGCAGATCACAAGACTGCGTCGAA
TGGCGCAGCTAGACGACGCTCAGCGACACCGACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6712:274..1808+

>mRNA_M-pyrifera_M_contig6712.16240.1 ID=mRNA_M-pyrifera_M_contig6712.16240.1|Name=mRNA_M-pyrifera_M_contig6712.16240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig6712:274..1808+ (Macrocystis pyrifera P11B4 male)
GACAACACCCTCCTCACCCTCCCCCCCTCCCCTCCCCTCCCCTCGCAGCA
TGCCGTGTGCACCCCGCGGTCTGGGCGCAAGACGCTGGAAGGTGGCGCTC
GCTACGAAGACGGGGTGGTGCTGGTCCCGGACTGCCGTAAGCTGAGACAA
GAGGTCGTCCGGAGCACCTGCATGGACCCCACGGGTAGCATCCGGCCGGA
CTACCACGCCTATGCCGGACAACACCCTCCTCACCCTCCCCCCCTCCCCT
CCCCTCCCCTCGCAGCATGCCGTGTGCACCCCGCGGTCTGGGCGCAAGAC
GCTGGAAGGTGGCGCTCGCTACGAAGACGGGGTGGTGCTGGTCCCGGACT
GCCGTAAGCTGAGACAAGAGGTCGTCCGGAGCACCTGCATGGACCCCACG
GGTAGCATCCGGCCGGACTACCACGCCTATGCCGGGGCGCCCATCTTCGT
CGAGGGGGCCCCTCTGGGCACGTTTTGCGTCTACCTACGGCGAACTTTGA
AGGATGTCGGCTGGGGCGCACACCACACGGTGATCCTCAGAGGCCTCGCC
GATGCGGCGTCGACCGAGGGGCGCCCATCTTCGTCGAGGGGGCCCCTCTG
GGCACGTTTTGCGTCTACCTACGGCGAACTTTGAAGGATGTCGGCTGGGG
CGCACACCACACGGTGATCCTCAGAGGCCTCGCCGATGCGGCGTCGACCG
AGATCACAAGACTGCGTCGAATGGCGCAGCTAGACGACGCTCAGCGACAC
CGACGCATCACAAGACTGCGTCGAATGGCGCAGCTAGACGACGCTCAGCG
ACACCGACGC
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