prot_M-pyrifera_M_contig6699.16214.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig6699.16214.1
Unique Nameprot_M-pyrifera_M_contig6699.16214.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length472
Homology
BLAST of mRNA_M-pyrifera_M_contig6699.16214.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 8.830e-102
Identity = 256/504 (50.79%), Postives = 301/504 (59.72%), Query Frame = 0
Query:    7 GDVCGACGTSDPRRL--TACCRSCNSVSHSRCAGFHSKSGGAPPPDWICGNCPGGARGAADDEGHRLLRGKGDVA--RGISTWCSCCLRRKTPNKITPAGRGGSRRARLCAPAEGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXRGSXXXXXXXXXAAVAXXXXXXXXXXXXXXXXXXXSGLGM-ERT---AARGGEGEGAVSR--VPRTRA--AARSXXXXXXLSSLAGGGGLKRGWL------------------TCQACSK--TGKAKT-GKTCGRCQQWWHDTPLCAGANACPGAGQWVGTWKCRGCLVQWEKELKERAAKVVLAWRELEGRRERSAGTRELARRAAAAESLAERKHGFVVGTVALPQVEFPPAGILPFLELDAINDTGYRLARISREDCSFMGPDRVVAKVDICRKHQIFAVIEGAFDPQVESLMDFLGNRKGLACKISGKAALGEASSTMGDYRAKLEDRV-----DAPHKDNPGTFFLDTASGQEEV 472
            G  C ACG    R +  +  CR+C  + H  C G+ +++  +PPPDWIC +CPGG RG +    H  + GKG V   +G   WC  CLR          GR  S          G G XXXXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXX    S  G  +RT    A  G   G+++R   PR      AR      X +S A GGG                         C  C K  +G  K+ GKTCG C +WWH++  C GA  CP +G+WVG W+CR CL  WEK L++RAAKVV AW + E RRER A        AAAAES A R+HGF V  V +P V  PPAGILPFL++DAI DTG+RLAR SREDCSFMGPD VVAKVD+C KH+IFA++EGAFDPQ++ LMDFL  RK LACK+SGKAA GEASSTMGDYR+KL DR+      A  KDNPGTFFLDT +GQ +V
Sbjct:  119 GRGCEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQV-HLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNS----------GSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRLEVVSATGQDXXXXXXXXXXXXXXXXRRKASSCGAADRTMGETALSGVTSGSLNRGAAPREEENPPARQQRARQXXASTARGGGRNGXXXXXXXXXXXXXXXXXXXGTVCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCCGAYGCPESGEWVGGWRCRHCLSLWEKGLRDRAAKVVEAWNDQEARRERDAPLHRETAAAAAAESKAARRHGFSVAAVEIPPVCCPPAGILPFLDVDAIKDTGFRLARFSREDCSFMGPDCVVAKVDLCWKHRIFAIVEGAFDPQIQPLMDFLQERKSLACKLSGKAASGEASSTMGDYRSKLADRIRDGKESAKAKDNPGTFFLDTTTGQADV 611          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6699.16214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI8.830e-10250.79PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 9..57
e-value: 0.015
score: 24.4
coord: 234..285
e-value: 4.0
score: 10.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..61
e-value: 8.7E-6
score: 27.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 5..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6699contigM-pyrifera_M_contig6699:5009..13546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6699.16214.1mRNA_M-pyrifera_M_contig6699.16214.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig6699 5009..13546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig6699.16214.1 ID=prot_M-pyrifera_M_contig6699.16214.1|Name=mRNA_M-pyrifera_M_contig6699.16214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=472bp
MTDDVQGDVCGACGTSDPRRLTACCRSCNSVSHSRCAGFHSKSGGAPPPD
WICGNCPGGARGAADDEGHRLLRGKGDVARGISTWCSCCLRRKTPNKITP
AGRGGSRRARLCAPAEGGGAGGGGGGGGAGAAGAAAAGAAAAVAAARGSA
GAGADGDDAAVARAGGATAGAAAAAVSPVAVSGLGMERTAARGGEGEGAV
SRVPRTRAAARSSSSSSPLSSLAGGGGLKRGWLTCQACSKTGKAKTGKTC
GRCQQWWHDTPLCAGANACPGAGQWVGTWKCRGCLVQWEKELKERAAKVV
LAWRELEGRRERSAGTRELARRAAAAESLAERKHGFVVGTVALPQVEFPP
AGILPFLELDAINDTGYRLARISREDCSFMGPDRVVAKVDICRKHQIFAV
IEGAFDPQVESLMDFLGNRKGLACKISGKAALGEASSTMGDYRAKLEDRV
DAPHKDNPGTFFLDTASGQEEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD