prot_M-pyrifera_M_contig66628.16150.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig66628.16150.1
Unique Nameprot_M-pyrifera_M_contig66628.16150.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length61
Homology
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BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Match: J3L2B6_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3L2B6_ORYBR)

HSP 1 Score: 51.6 bits (122), Expect = 4.700e-6
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0 
Query:    9 DKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISAAISACA-----DKGQW 61
            D  ++T+ I A A+ G+W + +R+L EM A G+  + VTI + +SACA     DKG+W
Sbjct:  187 DVVSWTSMISALARCGQWDKVLRFLSEMQAEGINPNKVTIISVLSACAQTQAVDKGRW 244
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BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Match: A0A1W0VYN6_SORBI (Uncharacterized protein n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A1W0VYN6_SORBI)

HSP 1 Score: 48.9 bits (115), Expect = 4.210e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:    9 DKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISAAISACA-----DKGQW 61
            D  ++T+ I A AQ G W   +R+L EM A+G+  + VT+ + +SAC      DKG+W
Sbjct:  186 DVVSWTSMISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRW 243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66628.16150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
J3L2B6_ORYBR4.700e-641.38Uncharacterized protein n=2 Tax=Oryza brachyantha ... [more]
A0A1W0VYN6_SORBI4.210e-539.66Uncharacterized protein n=4 Tax=Andropogoneae TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 5.0E-5
score: 21.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..57
e-value: 3.4E-6
score: 27.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..61
score: 5.546
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.142
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..61
e-value: 9.3E-12
score: 46.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66628contigM-pyrifera_M_contig66628:193..375 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66628.16150.1mRNA_M-pyrifera_M_contig66628.16150.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig66628 193..375 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig66628.16150.1 ID=prot_M-pyrifera_M_contig66628.16150.1|Name=mRNA_M-pyrifera_M_contig66628.16150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MQEDDVWVDKYAYTTAIHASAQLGKWSRCVRYLEEMDANGVEKDVVTISA
AISACADKGQW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf