mRNA_M-pyrifera_M_contig66097.16045.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A0G4G4S0_VITBC (PCIF1_WW domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G4S0_VITBC) HSP 1 Score: 142 bits (359), Expect = 4.520e-36 Identity = 78/188 (41.49%), Postives = 105/188 (55.85%), Query Frame = 1
Query: 16 LHFAKLCGLYAVHSRLCDPSFAHLPSALWCLLRRYTDVQG----GEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDPIPYGIKLLLDSEFCTTKKESDAKEKRSAHV 567
+H+ KL LY++H+ DP P L+C+L+RY G E G HAA E F+ L LGV ME FASPLNC+F RFCSA D D FGS+GS + F P+ GSF+V PP+T + A H LL RA+ E +P+SF + +P+W+ P P ++SE C + + K S HV
Sbjct: 478 MHYQKLRRLYSIHNAQTDPRSDLFPRRLFCMLQRYITFIGVDPFSEHCQGGNMHAAAPESVFLFLHQRLGVRMEFFASPLNCYFRRFCSAFPDTDRFFGSMGSVFDFFPRAGSFEVGPPYTEEVMLECAKHLHKLLVRAESEDRPMSFVVFVPDWSSP-PADALAFMESEECAPFLKLNTVAKGSQHV 664
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: D2V319_NAEGR (Phosphorylated CTD interacting factor n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V319_NAEGR) HSP 1 Score: 135 bits (341), Expect = 1.380e-33 Identity = 80/171 (46.78%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 16 LHFAKLCGLYAVHSRLCDPSFAHLPSALWCLLRRYTDVQG-GEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDPIPYGIKLLLDSE-FCT 522
+HF KL LY H++ DP P L+ LLRRY G E GA HAA+ EKGF L V E FASP+NC+FS FCSA D D+ FGS GSF+ FRP +G F+ PP+T KTA +C+ LL + E PLSFA+ +P W D YG L DS CT
Sbjct: 525 VHFNKLRLLYQKHNQEIDPDLKIFPYRLYALLRRYQTFFGDSESEEGANFHAALPEKGFEFLYKEFNVCHECFASPINCYFSSFCSAFPDTDVYFGSRGSFFEFRPTQGFFECGPPYTLEVMNKTAEYCLQLLKASDE---PLSFAVFVPEWTDT-EYGRMLHPDSTPLCT 691
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A0G4F1F9_9ALVE (PCIF1_WW domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F1F9_9ALVE) HSP 1 Score: 129 bits (325), Expect = 2.320e-31 Identity = 70/158 (44.30%), Postives = 86/158 (54.43%), Query Frame = 1
Query: 16 LHFAKLCGLYAVHSRLCDPSFAHLPSALWCLLRRYTDVQGGE----GLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDP 477
LHF K+ LY H+R DP L L+ L+RRY G + G G HAA E F L + V E FASPLNCFF RFCSA D D FGS GSF+ F PK G F+V PP+T + A H + LL A++ PLSF +P+W+ P
Sbjct: 1266 LHFTKMKALYERHNRESDPENEKLARRLYILVRRYVSFIGIDPRKPGNLGGNMHAAAPENVFKWLHANMAVSFEGFASPLNCFFPRFCSAFPDTDRWFGSQGSFFDFWPKSGHFEVGPPYTEEVMQAAAEHLLELLEAARDSSDPLSFTCFVPDWHSP 1423
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A7S0SPV1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SPV1_9CHLO) HSP 1 Score: 123 bits (309), Expect = 2.900e-30 Identity = 73/170 (42.94%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 1 VRVRGLHFAKLCGLYAVHSRLC-------DPSFAHLPSALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDPIPYG 489
++V H KL LY HS P A +A++ +L RY E L GA AA+ E F L LGV EAFASPLNC + RFCSA DVD PFGSLGSF+ F P++GSF++NPPF A H LL+ A+ G LSFA+ +P W + +G
Sbjct: 90 MQVSKQHMGKLRALYCRHSLGGAPLPPDGTPDHAAFAAAVFAVLARY------ESLGGAGYQAALGESAFDVLKRRLGVGCEAFASPLNCRYGRFCSAFPDVDRPFGSLGSFFDFAPERGSFEMNPPFVPEVLLAAAAHAEKLLAAAETAGDRLSFAVVVPAWREVPMWG 253
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A061REH8_9CHLO (Phosphorylated CTD-interacting factor 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061REH8_9CHLO) HSP 1 Score: 123 bits (308), Expect = 1.640e-29 Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 1
Query: 1 VRVRGLHFAKLCGLYAVHSRLCDPSFAHLPSALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNW 468
+R+ H KL L+A H + P L + + CLL RY+ +QGG G AA+ E+ F L LG +E FASPLNCF+ R CSA D+D FGSLGSF+SF PK+GSFQ NPPF K+ A H LL RA P+SF + +P W
Sbjct: 278 LRINKEHLDKLRELHAAHGQPGAPEEEFL-AGVACLLLRYSALQGGS-CHGGGMQAALTEEAFGVLHERLGATVECFASPLNCFWRRHCSAFPDIDCAFGSLGSFFSFWPKEGSFQANPPFEAXVIKRMAEHIHELLERATG---PMSFCVFIPAW 428
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A7S1X499_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X499_9CHLO) HSP 1 Score: 119 bits (299), Expect = 6.660e-29 Identity = 66/141 (46.81%), Postives = 80/141 (56.74%), Query Frame = 1
Query: 97 LWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDPIPYGIKLLLDSEFC 519
LWCLL RY E LSG AA+ E GF AL + + V+ E FASPLNC + CSA D D PFGSLGSF+ FRP GSF+ NPPF H +LL+RA PLSF + +P W + + + K L S FC
Sbjct: 210 LWCLLARY------EALSGHGYQAALCEAGFRALRSAMAVDFECFASPLNCHYGPHCSAFPDTDAPFGSLGSFFQFRPTSGSFEANPPFVPEVMSAMVGHMETLLARASG---PLSFTVIIPAWEEVLAW--KQLTGSNFC 339
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: C6LQA7_GIAIB (Phosphorylated CTD interacting factor PCIF1 n=3 Tax=Giardia intestinalis TaxID=5741 RepID=C6LQA7_GIAIB) HSP 1 Score: 120 bits (300), Expect = 3.580e-28 Identity = 67/159 (42.14%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 RVRGLHFAKLCGLYAVHS-RLCDPSFAHLPSALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDP 477
++ +HF KL LY S + DP L+ LLRRY G E G HAA E F L + L V E FASPLNCFFS+FCSA ++D+ FGSLGSF+ + +GSF+ PP+T +TA H I L ++ E+ +P+ F I +P W P
Sbjct: 301 KLSSIHFYKLRELYKKTSGKRFDPELKMFNKLLFILLRRYHTFFGTERFEGTSFHAAAPENIFRRLKSFLDVSQECFASPLNCFFSQFCSAFPEIDVFFGSLGSFFDYDITEGSFECGPPYTLECMDRTARHIIRTLDKS-EDRRPIMFVIFVPEWRVP 458
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: C1E0K4_MICCC (PCIF1_WW domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E0K4_MICCC) HSP 1 Score: 113 bits (282), Expect = 5.560e-28 Identity = 63/128 (49.22%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 91 SALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWND 474
+A + LL RY D GG G AA+ E F L LGV EAFASPLNC + RFCSA DVD PFGSLGSF+ F P +GSF++NPPF A SLL+ A++ G LSF + +P W D
Sbjct: 3 AATFSLLARY-DALGGAGYQ-----AALNETAFDVLKKRLGVGCEAFASPLNCRYGRFCSAFPDVDSPFGSLGSFFHFAPTRGSFEMNPPFVPEVLMAAAERAESLLAAAEDSGGRLSFVVVVPAWRD 124
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A0A7S0ICW5_MICPS (Hypothetical protein (Fragment) n=3 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0ICW5_MICPS) HSP 1 Score: 118 bits (296), Expect = 8.690e-28 Identity = 72/159 (45.28%), Postives = 85/159 (53.46%), Query Frame = 1
Query: 19 HFAKLCGLYAVHSR-------LCDPSFAHLPSALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWND 474
H KL LY HS P +A++ LL RY D GG G AA+ E F L LGV EAFASPLNC + RFCSA DVD PFGSLGSF+ F P +GSF++NPPF A SLL+ A+E G LSF + +P W D
Sbjct: 245 HIGKLRALYCRHSLGGAPLPPEGTPEHGAFIAAIFSLLARY-DALGGAGYQ-----AALNETAFDVLKKRLGVGCEAFASPLNCRYGRFCSAFPDVDGPFGSLGSFFQFAPARGSFEMNPPFVPEVLTAAAERAESLLAAAEESGGRLSFVVVVPAWRD 397
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Match: A8BD86_GIAIC (Phosphorylated CTD interacting factor PCIF1 n=3 Tax=Giardia intestinalis TaxID=5741 RepID=A8BD86_GIAIC) HSP 1 Score: 119 bits (297), Expect = 9.060e-28 Identity = 66/159 (41.51%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 4 RVRGLHFAKLCGLYAVHS-RLCDPSFAHLPSALWCLLRRYTDVQGGEGLSGAEAHAAVAEKGFVALSTLLGVEMEAFASPLNCFFSRFCSAQTDVDLPFGSLGSFYSFRPKKGSFQVNPPFTTTDFKKTAVHCISLLSRAQEEGKPLSFAICLPNWNDP 477
++ +HF KL LY S + DP L+ LLRRY G E G HAA E F L + L V E FASPLNCFFS+FCSA ++D+ FGSLGSF+ + +GSF+ PP+T +TA H I L ++ E +P+ F + +P W P
Sbjct: 301 KLSSIHFYKLRELYKRTSGKRFDPEMKMFSKLLFILLRRYHTFFGTERFEGTSFHAAAPENIFRRLKSFLEVSQECFASPLNCFFSQFCSAFPEIDVFFGSLGSFFDYDIAEGSFECGPPYTLECMDRTAKHIIRTLDKS-ENRRPIMFVVFVPEWRVP 458 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66097.16045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig66097.16045.1 >prot_M-pyrifera_M_contig66097.16045.1 ID=prot_M-pyrifera_M_contig66097.16045.1|Name=mRNA_M-pyrifera_M_contig66097.16045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp VRVRGLHFAKLCGLYAVHSRLCDPSFAHLPSALWCLLRRYTDVQGGEGLSback to top mRNA from alignment at M-pyrifera_M_contig66097:211..777- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig66097.16045.1 ID=mRNA_M-pyrifera_M_contig66097.16045.1|Name=mRNA_M-pyrifera_M_contig66097.16045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig66097:211..777- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig66097:211..777- >mRNA_M-pyrifera_M_contig66097.16045.1 ID=mRNA_M-pyrifera_M_contig66097.16045.1|Name=mRNA_M-pyrifera_M_contig66097.16045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig66097:211..777- (Macrocystis pyrifera P11B4 male)back to top |