mRNA_M-pyrifera_M_contig66033.16033.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66033.16033.1
Unique NamemRNA_M-pyrifera_M_contig66033.16033.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.340e-24
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            VTFYGPRSE+V SGSDCGHIF W+K + KLEMLL GD VGAVNCLEPHP+LP LAT
Sbjct:  510 VTFYGPRSEFVVSGSDCGHIFFWNKSSAKLEMLLFGDKVGAVNCLEPHPYLPALAT 565
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.340e-24
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLATRCVHR 183
            VTFYGPRSE+V SGSDCGHIF W+K + KLEMLL GD VGAVNCLEPHP+LP LAT  + R
Sbjct:  555 VTFYGPRSEFVVSGSDCGHIFFWNKASAKLEMLLFGDKVGAVNCLEPHPYLPALATSGLSR 615
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A6S7JB47_PARCT (DDB1- and CUL4-associated factor 8 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JB47_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 2.500e-23
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGPRSE+V SGSDCGH+FLWDKET  +  LL GD  G VNCLEPHP+ P LAT
Sbjct:    6 VNFYGPRSEFVVSGSDCGHVFLWDKETESIVQLLEGDVTGVVNCLEPHPYHPFLAT 61
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: UPI000F55208E (DDB1- and CUL4-associated factor 8-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F55208E)

HSP 1 Score: 100 bits (248), Expect = 2.530e-23
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGP+SEY+ SGSDCGHIFLWDKET ++   L GDN G VNCLEPHPF P+LAT
Sbjct:  301 VNFYGPQSEYIVSGSDCGHIFLWDKETEEVVQFLEGDNTGVVNCLEPHPFAPILAT 356
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: UPI00106BD386 (DDB1- and CUL4-associated factor 8-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BD386)

HSP 1 Score: 95.5 bits (236), Expect = 1.680e-21
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGPRSE+V SGSDCGH+F+WDKET  +  LL GD  G VNCLEPHP+ P+LAT
Sbjct:  457 VNFYGPRSEFVVSGSDCGHVFIWDKETESIVQLLEGDVAGVVNCLEPHPYYPLLAT 512
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A2K6EKW7_PROCO (DDB1- and CUL4-associated factor 8-like protein 2 n=4 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6EKW7_PROCO)

HSP 1 Score: 95.1 bits (235), Expect = 2.310e-21
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGP+SE+V SGSDCGHIFLW+K + ++  L+ GDN GAVNCLEPHP LPVLAT
Sbjct:  473 VNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQLMEGDNEGAVNCLEPHPCLPVLAT 528
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A0A6YWY2_MOUSE (DDB1- and CUL4-associated factor 8 (Fragment) n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0A6YWY2_MOUSE)

HSP 1 Score: 89.7 bits (221), Expect = 2.310e-21
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGP+SE+V SGSDCGHIFLW+K + ++   + GD  G VNCLEPHP LPVLAT
Sbjct:   31 VNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: UPI001CF20684 (DDB1- and CUL4-associated factor 8-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF20684)

HSP 1 Score: 94.4 bits (233), Expect = 3.180e-21
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGP+SEY+ SGSDC HIFLWDK+T ++   L GDN G VNCLEPHP  PVLAT
Sbjct:  299 VNFYGPQSEYIVSGSDCSHIFLWDKQTEEVVQFLQGDNTGVVNCLEPHPHAPVLAT 354
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A8B8D975_CRAVI (LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 8-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D975_CRAVI)

HSP 1 Score: 93.6 bits (231), Expect = 8.150e-21
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V FYGPRSE+V SGSDCGHIFLWDKET  +   L GD+ G +N LEPHPF P+LAT
Sbjct:  597 VNFYGPRSEFVVSGSDCGHIFLWDKETESVVQFLEGDDCGVINVLEPHPFAPILAT 652
[Close]
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Match: A0A6P4K4F4_DROBP (DDB1- and CUL4-associated factor 8 n=1 Tax=Drosophila bipectinata TaxID=42026 RepID=A0A6P4K4F4_DROBP)

HSP 1 Score: 93.6 bits (231), Expect = 8.160e-21
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPFLPVLAT 168
            V F+GPRSEY+ SGSDCGHIFLWDK T  +   + GD+ G VNCLEPHP++PVLAT
Sbjct:  588 VNFFGPRSEYIVSGSDCGHIFLWDKNTEAIINFMKGDHAGVVNCLEPHPWMPVLAT 643
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66033.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTN6_ECTSI1.340e-2480.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJD8_9PHAE1.340e-2475.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7JB47_PARCT2.500e-2371.43DDB1- and CUL4-associated factor 8 n=3 Tax=Paramur... [more]
UPI000F55208E2.530e-2373.21DDB1- and CUL4-associated factor 8-like n=1 Tax=Po... [more]
UPI00106BD3861.680e-2169.64DDB1- and CUL4-associated factor 8-like n=1 Tax=De... [more]
A0A2K6EKW7_PROCO2.310e-2171.43DDB1- and CUL4-associated factor 8-like protein 2 ... [more]
A0A0A6YWY2_MOUSE2.310e-2166.07DDB1- and CUL4-associated factor 8 (Fragment) n=2 ... [more]
UPI001CF206843.180e-2169.64DDB1- and CUL4-associated factor 8-like n=1 Tax=Ac... [more]
A0A8B8D975_CRAVI8.150e-2169.64LOW QUALITY PROTEIN: DDB1- and CUL4-associated fac... [more]
A0A6P4K4F4_DROBP8.160e-2167.86DDB1- and CUL4-associated factor 8 n=1 Tax=Drosoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66033contigM-pyrifera_M_contig66033:109..1182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.6e-20
Seed eggNOG ortholog2880.D7FTN6
Preferred nameDCAF8
KEGG koko:K11795,ko:K11804,ko:K22204
KEGG TC1.A.46.1
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG1334@1,KOG1334@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816549.4003875-CDS-M-pyrifera_M_contig66033:108..1831622816549.4003875-CDS-M-pyrifera_M_contig66033:108..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66033 109..183 +
1692278040.8216605-CDS-M-pyrifera_M_contig66033:108..1831692278040.8216605-CDS-M-pyrifera_M_contig66033:108..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66033 109..183 +
1622816549.4178345-CDS-M-pyrifera_M_contig66033:1071..11821622816549.4178345-CDS-M-pyrifera_M_contig66033:1071..1182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66033 1072..1182 +
1692278040.8323338-CDS-M-pyrifera_M_contig66033:1071..11821692278040.8323338-CDS-M-pyrifera_M_contig66033:1071..1182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66033 1072..1182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66033.16033.1prot_M-pyrifera_M_contig66033.16033.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66033 109..1182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66033.16033.1

>prot_M-pyrifera_M_contig66033.16033.1 ID=prot_M-pyrifera_M_contig66033.16033.1|Name=mRNA_M-pyrifera_M_contig66033.16033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
VTFYGPRSEYVASGSDCGHIFLWDKETTKLEMLLSGDNVGAVNCLEPHPF
LPVLATRCVHRH
back to top

mRNA from alignment at M-pyrifera_M_contig66033:109..1182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66033.16033.1 ID=mRNA_M-pyrifera_M_contig66033.16033.1|Name=mRNA_M-pyrifera_M_contig66033.16033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig66033:109..1182+ (Macrocystis pyrifera P11B4 male)
GTCACGTTTTACGGCCCGCGCAGCGAGTACGTTGCCAGCGGGTCGGACTG
CGGTCATATCTTCCTCTGGGACAAGGTATGCGCTTCATTAAATGCAATAC
TACAGCATAGTATAGTACAGTACAGTATAGTGCAGTGGCCTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCTTTT
TCTTTCTTATATTCTTTTATTTGTTAATAATTTNNNNNNNNNNTTTCTTC
CGCGGGGACAGGGGCTGCGTGCTATGAAAGGTATTCCTACGGTATAGTAT
AGTACATTAGAGTATAGTGGGGGCGTTTTTTTTTTTTTTTTTTTTTTTTT
TGTTCTTGACGCACCTCGAGCAGATCCACACCCTGCTACTGCCGTAGATC
CATCAGATCGGAAATACAGTCAACGTTAGTATGTTGAACCCAGAGTTCGA
AACGTGGGTTATATAGGTTCGGTAGTGGGTGGTGGGTCTTTTTTTTTTGG
AACCTCGGAAGTTTTTTGGTGAAGAGGCGTTTTTTGGTTGTGCGCAGGGT
CTCTTCTAGATGTAGTGGTGGTGAAATACGGATTCACGCCAGACTTTCGT
GTCCTGGTCCTGGATCTGCCATGCGGATCATTCTGTCCCCCCCCCCTTTA
TACCGAGTCGCAGATGATGCAGATCGTTAATACTAAGTCTTCCCTGAAAG
ATGTAGATCAAGCATGAGATATTTTTTTTGGAAAATAAGTTACACATATT
TGAGTATTTTCTGGAACATAAATTATTTTTTTGATGAGTATTTTTTTTCA
ATAATAATATATATATATATATATATATTTTTGAATCACCCCACCAGGTA
TGAAACTACCAAACCCACACAAAATTCCCACCCCGAGCCCCCCCCCCCCC
CACCCCCCCCCAACGCTCGCCCCCCCGCCGTCTTTGGTCGGGGTTTCCGC
CTTCTTTTATCAGGAAACGACGAAGCTAGAGATGCTCTTGAGCGGCGACA
ATGTGGGCGCCGTTAACTGTCTGGAACCGCACCCGTTCTTGCCTGTCCTC
GCTACCAGGTGCGTGCACCGACAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig66033:109..1182+

>mRNA_M-pyrifera_M_contig66033.16033.1 ID=mRNA_M-pyrifera_M_contig66033.16033.1|Name=mRNA_M-pyrifera_M_contig66033.16033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig66033:109..1182+ (Macrocystis pyrifera P11B4 male)
GTCACGTTTTACGGCCCGCGCAGCGAGTACGTTGCCAGCGGGTCGGACTG
CGGTCATATCTTCCTCTGGGACAAGGTCACGTTTTACGGCCCGCGCAGCG
AGTACGTTGCCAGCGGGTCGGACTGCGGTCATATCTTCCTCTGGGACAAG
GAAACGACGAAGCTAGAGATGCTCTTGAGCGGCGACAATGTGGGCGCCGT
TAACTGTCTGGAACCGCACCCGTTCTTGCCTGTCCTCGCTACCAGGTGCG
TGCACCGACACGAAACGACGAAGCTAGAGATGCTCTTGAGCGGCGACAAT
GTGGGCGCCGTTAACTGTCTGGAACCGCACCCGTTCTTGCCTGTCCTCGC
TACCAGGTGCGTGCACCGACAC
back to top