mRNA_M-pyrifera_M_contig66022.16032.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig66022.16032.1
Unique NamemRNA_M-pyrifera_M_contig66022.16032.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A6H5K504_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K504_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.970e-65
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T RLIPEGAVDPKYIEDSM TPDTGSFMHLHLGIDAEGL  LDIHYSVVESW+VPIDAPQNMFIVSIPTVLD SLAPEGKHLVHIY+AGNEPYKLWEG+KRGSPEY
Sbjct:   57 TERLIPEGAVDPKYIEDSMYTPDTGSFMHLHLGIDAEGLHDLDIHYSVVESWTVPIDAPQNMFIVSIPTVLDKSLAPEGKHLVHIYTAGNEPYKLWEGMKRGSPEY 162          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A2D2AH28_9PHAE (Prolycopene isomerase-like1 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A2D2AH28_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.590e-62
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 1
Query:   10 LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGID +GL+ LDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIY+AGNEPYKLWEG+KRGSPEY
Sbjct:  279 LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDGKGLDDLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYTAGNEPYKLWEGMKRGSPEY 381          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: D7FUQ4_ECTSI (Carotenoid isomerase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.490e-62
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1
Query:   10 LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGL+ LDIHYSVVESW+VPIDAPQNMFIVSIPTVLD SLAP+GKHLVHIY+AGNEPYKLWEG+KRGSPEY
Sbjct:  272 LIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLDDLDIHYSVVESWTVPIDAPQNMFIVSIPTVLDKSLAPDGKHLVHIYTAGNEPYKLWEGMKRGSPEY 374          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A2D2AH38_9PHAE (Prolycopene isomerase-like1 n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A2D2AH38_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.760e-57
Identity = 90/106 (84.91%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T RLIP+GAVD KYIEDS +TPDTGSFMHLHLGIDA GL+ LDIHYSVV+SWS+PIDAPQNMF+VSIPTVLDPSLAPEGKHLVHIY+AGNEPY LW+G+KRG PEY
Sbjct:  276 TIRLIPKGAVDAKYIEDSDETPDTGSFMHLHLGIDARGLDDLDIHYSVVDSWSIPIDAPQNMFVVSIPTVLDPSLAPEGKHLVHIYTAGNEPYDLWQGVKRGCPEY 381          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A0D2NQT6_9CHLO (Carotenoid isomerase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NQT6_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.390e-37
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEG-LDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T RL+PEG+V  ++   S+ TP TGSF+HLHLGIDA GL   LD H+  V+ WS  +DAPQN+ I SIPTV DPSLAP GK +VH Y+AGNEPY LWEG++RGSPEY
Sbjct:   72 TARLLPEGSVPKEWRARSVATPQTGSFVHLHLGIDASGLPADLDCHHLFVDDWS-DLDAPQNVRIASIPTVFDPSLAPPGKAVVHAYTAGNEPYSLWEGVRRGSPEY 177          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A7S0RUW2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUW2_9CHLO)

HSP 1 Score: 132 bits (332), Expect = 6.140e-37
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGL-EGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T +L+PEGAV  ++ E+   T    SFMHLHLGIDA  L E L+IH+ VV  W + IDAPQN+ +VSIP+VLDPSLAP GKH++H Y+ G+EPY +WEGL R SPEY
Sbjct:   27 TLKLLPEGAVPDEWKEEKQATKQCESFMHLHLGIDATDLPEDLEIHHIVVNDWDLGIDAPQNLVLVSIPSVLDPSLAPPGKHVIHAYTPGSEPYDIWEGLDRKSPEY 133          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A2P6V6Z2_9CHLO (Carotene isomerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V6Z2_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 1.300e-36
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGL-EGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T RL+PEGAV   +  + M TP TGSFMHLHLGIDA GL + L+IH+ VV  W   I+APQN+  +SIP+V DPSLAP GKH VH+Y+AGNEPY+LWEGL+ G+PEY
Sbjct:  339 TARLLPEGAVPEAWRSEGMATPRTGSFMHLHLGIDAAGLRDDLEIHHLVVNQWQ-DIEAPQNVINISIPSVFDPSLAPPGKHCVHVYTAGNEPYELWEGLRPGTPEY 444          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A7S4DDP8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDP8_HETAK)

HSP 1 Score: 131 bits (330), Expect = 2.270e-36
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEG--LDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T RL+P G V   + +   D PDT SFMHLHLGID  GL    L+IHY+VV +W  P+DAP  + IVSIPTVLDPSLAP GKH+VH YSAGNEPY  WEGL R S +Y
Sbjct:   37 TARLLPPGTVPDAWRQGVEDLPDTASFMHLHLGIDGAGLGPGELEIHYTVVNAWE-PVDAPMGVIIVSIPTVLDPSLAPPGKHVVHAYSAGNEPYADWEGLDRASEDY 143          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A835Z9G8_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.890e-36
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   40 YIEDSMDTPDTGSFMHLHLGIDAEGLEGL--DIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            ++E S  TPDT SF HLHLGIDA GLE L  +IHY+V+ +W  PIDAP NM IVSIPTVLDP LAP GKH VH Y AGNEPY LWEGL+RGS EY
Sbjct:  319 FVEASQATPDTASFNHLHLGIDAAGLEELKLNIHYTVINTWDEPIDAPLNMVIVSIPTVLDPGLAPPGKHAVHAYMAGNEPYSLWEGLQRGSKEY 413          
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Match: A0A1U7IJ27_9CYAN (Carotene isomerase n=2 Tax=Phormidium TaxID=1198 RepID=A0A1U7IJ27_9CYAN)

HSP 1 Score: 137 bits (345), Expect = 4.260e-36
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGL-EGLDIHYSVVESWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLKRGSPEY 318
            T +LIPEGAV  +YI+    TP+  SFMHLHLGIDA GL + L IHY VV  W   I APQN+ ++SIP+VLDPSLAP GKH++H+Y+ GNEP+ LW+G++R S EY
Sbjct:  295 TLKLIPEGAVPKRYIKQQQTTPECDSFMHLHLGIDATGLRKDLGIHYIVVNDWDRGITAPQNLVLISIPSVLDPSLAPPGKHVIHVYTPGNEPFSLWQGMERNSEEY 401          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig66022.16032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K504_9PHAE2.970e-6592.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D2AH28_9PHAE1.590e-6294.17Prolycopene isomerase-like1 n=2 Tax=Scytosiphonace... [more]
D7FUQ4_ECTSI2.490e-6293.20Carotenoid isomerase-like protein n=1 Tax=Ectocarp... [more]
A0A2D2AH38_9PHAE1.760e-5784.91Prolycopene isomerase-like1 n=1 Tax=Sargassum inte... [more]
A0A0D2NQT6_9CHLO2.390e-3763.55Carotenoid isomerase n=1 Tax=Monoraphidium neglect... [more]
A0A7S0RUW2_9CHLO6.140e-3759.81Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A2P6V6Z2_9CHLO1.300e-3663.55Carotene isomerase n=1 Tax=Micractinium conductrix... [more]
A0A7S4DDP8_HETAK2.270e-3662.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z9G8_9STRA2.890e-3670.53Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A1U7IJ27_9CYAN4.260e-3659.81Carotene isomerase n=2 Tax=Phormidium TaxID=1198 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig66022contigM-pyrifera_M_contig66022:82..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue3.7e-51
Seed eggNOG ortholog2880.D7FUQ4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.all-trans-retinol 13,14-reductase activity
EggNOG OGsCOG1233@1,KOG4254@2759
Ec32 ortholog descriptioncarotenoid isomerase-like protein
Ec32 orthologEc-03_001460.2
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816549.356572-CDS-M-pyrifera_M_contig66022:81..2581622816549.356572-CDS-M-pyrifera_M_contig66022:81..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66022 82..258 -
1692278040.8003604-CDS-M-pyrifera_M_contig66022:81..2581692278040.8003604-CDS-M-pyrifera_M_contig66022:81..258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66022 82..258 -
1622816549.36886-CDS-M-pyrifera_M_contig66022:1022..11631622816549.36886-CDS-M-pyrifera_M_contig66022:1022..1163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66022 1023..1163 -
1692278040.8117318-CDS-M-pyrifera_M_contig66022:1022..11631692278040.8117318-CDS-M-pyrifera_M_contig66022:1022..1163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig66022 1023..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig66022.16032.1prot_M-pyrifera_M_contig66022.16032.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig66022 82..1163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig66022.16032.1

>prot_M-pyrifera_M_contig66022.16032.1 ID=prot_M-pyrifera_M_contig66022.16032.1|Name=mRNA_M-pyrifera_M_contig66022.16032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
TNRLIPEGAVDPKYIEDSMDTPDTGSFMHLHLGIDAEGLEGLDIHYSVVE
SWSVPIDAPQNMFIVSIPTVLDPSLAPEGKHLVHIYSAGNEPYKLWEGLK
RGSPEY
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mRNA from alignment at M-pyrifera_M_contig66022:82..1163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig66022.16032.1 ID=mRNA_M-pyrifera_M_contig66022.16032.1|Name=mRNA_M-pyrifera_M_contig66022.16032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1082bp|location=Sequence derived from alignment at M-pyrifera_M_contig66022:82..1163- (Macrocystis pyrifera P11B4 male)
ACCAATAGGCTTATTCCTGAGGGGGCGGTGGACCCGAAGTATATCGAGGA TAGTATGGACACACCCGACACCGGCAGCTTCATGCACCTGCATCTAGGCA TCGACGCGGAGGGTTTGGAGGGCCTCGACATACATTATTCGGTACGGTTT TTGGGCCACAGTCACGGTTGAGGGTATGGGTACGGTCTTGGTTGTGGTCT CTTGTGGTCACTGAGGTTGTGATTGTTGTAGTTGCGGCTACGGATGCGGT GACGGTGACGGGTATGGGTTCGGAGATGGCTATGTCATGGTTATAGTTAC GGTTGCCGATGTGGTTATCGCTATGGTTGCTGTTATGGGTGTGGTTAATG TTATGGTGCCGGTTTTCGGTCACGGCTGTGGTTGTGGTTGCGGTGTTCGG CGACGGTTGCGACGATTGCGGTTATGGTTACGCTGTTCGGTTACGGATTT GCCTGCTGTTATGTTTATGGCAATGGTTGCGGTTTCGGGTAAGGTTGCGG TCAAGGTTGAGGTTGCGGAAAGCGGTTATAGCGGGAACAGCTGCGGCTAC AGCTGCGGCCACGGCGCGGTTTCAGTTGCGATTTCGGTTCCTGTCGCGGC TATGTTTTTTTTCATGTCGGTTGTTTGCGGGTTCGGTTGCGGTCTTGCCT CCGCGTTTCATTTTGCGTTTCGATGCATTGTGTTTCCTTGTCGATGAAGG TTGCCAGTCACAGTTGCAACAGCAGTAGTAGTGACGCCAGAAGTAGTAGC CGCAGAAGCCGGAGCAATAACAACAGCAGCAGATCGCCAACACCCATACC AACCCCACAACAACCACCACCACCACCACCTCCGCCACTACCGCATCCCC CCCCTCTCGCCCCACCTCATTCGCACGCTCGCGGGAACAACTCTATAAAA AAAAGGTGGTGGAGTCGTGGTCAGTGCCCATCGACGCCCCTCAGAACATG TTCATCGTGTCCATCCCTACGGTGCTGGACCCATCCCTAGCGCCGGAGGG GAAACACCTGGTGCACATCTACAGTGCAGGAAACGAGCCGTACAAGCTTT GGGAGGGGCTGAAGCGTGGTTCCCCGGAGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig66022:82..1163-

>mRNA_M-pyrifera_M_contig66022.16032.1 ID=mRNA_M-pyrifera_M_contig66022.16032.1|Name=mRNA_M-pyrifera_M_contig66022.16032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig66022:82..1163- (Macrocystis pyrifera P11B4 male)
ACCAATAGGCTTATTCCTGAGGGGGCGGTGGACCCGAAGTATATCGAGGA
TAGTATGGACACACCCGACACCGGCAGCTTCATGCACCTGCATCTAGGCA
TCGACGCGGAGGGTTTGGAGGGCCTCGACATACATTATTCGACCAATAGG
CTTATTCCTGAGGGGGCGGTGGACCCGAAGTATATCGAGGATAGTATGGA
CACACCCGACACCGGCAGCTTCATGCACCTGCATCTAGGCATCGACGCGG
AGGGTTTGGAGGGCCTCGACATACATTATTCGGTGGTGGAGTCGTGGTCA
GTGCCCATCGACGCCCCTCAGAACATGTTCATCGTGTCCATCCCTACGGT
GCTGGACCCATCCCTAGCGCCGGAGGGGAAACACCTGGTGCACATCTACA
GTGCAGGAAACGAGCCGTACAAGCTTTGGGAGGGGCTGAAGCGTGGTTCC
CCGGAGTACGTGGTGGAGTCGTGGTCAGTGCCCATCGACGCCCCTCAGAA
CATGTTCATCGTGTCCATCCCTACGGTGCTGGACCCATCCCTAGCGCCGG
AGGGGAAACACCTGGTGCACATCTACAGTGCAGGAAACGAGCCGTACAAG
CTTTGGGAGGGGCTGAAGCGTGGTTCCCCGGAGTAC
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