mRNA_M-pyrifera_M_contig65748.15969.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65748.15969.1
Unique NamemRNA_M-pyrifera_M_contig65748.15969.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A2P2ICM6_9CRUS (Fumarate reductase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2ICM6_9CRUS)

HSP 1 Score: 150 bits (378), Expect = 2.980e-42
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            +QVI+IGGGL+GLSAAHTVLERGG V+V++KN F GGNSTKATSGINGALTR QI LG+KDS +AFL DTA SA+KG S+ P  L RVL   SAPAV WL D FGLDL
Sbjct:   21 SQVIIIGGGLAGLSAAHTVLERGGRVLVLEKNAFCGGNSTKATSGINGALTRVQIKLGIKDSTEAFLADTARSATKGESEIPTELNRVLVNESAPAVHWLIDRFGLDL 128
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A6A7G054_9CRUS (Flavocytochrome c n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G054_9CRUS)

HSP 1 Score: 149 bits (377), Expect = 4.380e-40
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            +QVIVIGGGL+GLSAAHT+LERGG V V++KN F GGNSTKATSGINGALTR QI  G++DS + FL DTALSASKG SD P  L RVL   SAPAV WL D FGLDL
Sbjct:    2 SQVIVIGGGLAGLSAAHTILERGGRVCVLEKNSFCGGNSTKATSGINGALTRVQIKNGIQDSTEVFLRDTALSASKGKSDVPSELNRVLVNESAPAVHWLIDRFGLDL 109
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A7S4HGQ5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HGQ5_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.310e-39
Identity = 78/109 (71.56%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASD-KPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            ++VIVIGGGL+GLS+AHT+LE+GG+V+V+DKN F+GGNSTKATSGINGALTRTQI  GV DS +AFL DT  SA+ G  D KPYPLA VL   SAPAVEWL + FGLDL
Sbjct:    7 SKVIVIGGGLAGLSSAHTILEQGGNVLVLDKNAFMGGNSTKATSGINGALTRTQIKKGVTDSTEAFLRDTMASATGGNPDAKPYPLAEVLVNESAPAVEWLIERFGLDL 115
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A433B9J7_9FUNG (Putative fumarate reductase (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433B9J7_9FUNG)

HSP 1 Score: 137 bits (344), Expect = 2.820e-38
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            NQ+IV+GGGLSGLSAAHT+LE GG+V+V+DKNPF GGNSTKATSGINGALTRTQI  G+ DS + F +DTA SA      +   L +VLT  SA AVEWLQD F LDL
Sbjct:    5 NQIIVVGGGLSGLSAAHTILEHGGNVLVLDKNPFFGGNSTKATSGINGALTRTQIQQGIPDSVETFYNDTARSARDLLRPE---LVKVLTGQSASAVEWLQDKFSLDL 109
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A367KSI4_RHIST (FAD_binding_2 domain-containing protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KSI4_RHIST)

HSP 1 Score: 135 bits (341), Expect = 6.060e-37
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYP-LARVLTYGSAPAVEWLQDSFGLDL 336
            NQ+IV+GGGLSGLSAAHTV+E+GG+V+++DKNPF GGNSTKATSGINGALTRTQ++L +KDS + F  DT     K A D   P L RVLT  S+ AVEWLQD F LDL
Sbjct:    6 NQIIVVGGGLSGLSAAHTVVEQGGNVLLLDKNPFFGGNSTKATSGINGALTRTQVALDIKDSVEQFYQDTL----KSARDLARPDLIRVLTGRSSSAVEWLQDKFALDL 110
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A6B2L0T2_9EUKA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L0T2_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 6.610e-37
Identity = 70/96 (72.92%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:   49 LSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            +SA HTVLERGG V++IDKNPFLGGNSTKATSGINGALT +Q++LG+ D+P +F  DTALSA+KG SDK +PL RVL + SAPAVEWL+ SFGLDL
Sbjct:    1 MSACHTVLERGGRVLLIDKNPFLGGNSTKATSGINGALTTSQMTLGIPDTPMSFEKDTALSATKGKSDKIHPLGRVLVWESAPAVEWLKTSFGLDL 96
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A4P9XUE6_9FUNG (Fumarate reductase (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XUE6_9FUNG)

HSP 1 Score: 138 bits (348), Expect = 2.130e-36
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            NQ+IV+GGGL+GLSAAHTVLERGG+V+++DKN F+GGNSTKATSGINGALT TQI LG+KDS + F  D+A SA          L RVLTY SA AVEWLQ+ F LDL
Sbjct:    3 NQIIVVGGGLTGLSAAHTVLERGGNVLLLDKNSFMGGNSTKATSGINGALTNTQIKLGIKDSAEIFYEDSARSARDLIDPA---LTRVLTYNSASAVEWLQEKFQLDL 107
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A2P6P0X3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6P0X3_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 5.650e-36
Identity = 76/106 (71.70%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:   19 VIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAVEWLQDSFGLDL 336
            VIV+GGGLSGLSAAHTVLERGG V+V+DKN FLGGNSTKATSGINGALTRTQ+ LG+KDS +AF  DTA SA      +   L +VLT  SA AVEWLQD F LDL
Sbjct:  116 VIVVGGGLSGLSAAHTVLERGGRVLVLDKNSFLGGNSTKATSGINGALTRTQVKLGIKDSVEAFYDDTAKSAKNLLRPE---LVKVLTGNSASAVEWLQDRFALDL 218
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: A0A061RG22_9CHLO (FAD_binding_2 domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RG22_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 6.230e-36
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:    4 MAANQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSA-SKGASDKPY---PLARVLTYGSAPAVEWLQDSFGLDL 336
            M  ++V+V+GGGL+GLSAAHTVLE GG V+++DK  FLGGNSTKATSGINGALT+ Q +LG+ DSP+ F  DT  SA   G ++ P    PLA +LT+GS PAV+WL + FGLDL
Sbjct:    1 MGDHRVVVVGGGLAGLSAAHTVLEAGGRVLLLDKMAFLGGNSTKATSGINGALTKAQQNLGINDSPEIFEADTLQSARGLGNTEAPSYTPPLAHILTHGSGPAVDWLAERFGLDL 115
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BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Match: I1BMN7_RHIO9 (Cytochrome b5 heme-binding domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=I1BMN7_RHIO9)

HSP 1 Score: 138 bits (347), Expect = 7.560e-36
Identity = 76/109 (69.72%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:   13 NQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGINGALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYP-LARVLTYGSAPAVEWLQDSFGLDL 336
            NQ+IV+GGGLSGLSAAHTV+E+GG+V+++DKNPF GGNSTKATSGINGALTRTQISL +KDS + F  DT     K A D   P L RVLT  SA AVEWLQD F LDL
Sbjct:    6 NQIIVVGGGLSGLSAAHTVIEQGGNVLLLDKNPFFGGNSTKATSGINGALTRTQISLDIKDSVEQFYQDTL----KSARDLARPDLIRVLTGRSASAVEWLQDKFTLDL 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65748.15969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P2ICM6_9CRUS2.980e-4273.15Fumarate reductase (Fragment) n=1 Tax=Hirondellea ... [more]
A0A6A7G054_9CRUS4.380e-4073.15Flavocytochrome c n=1 Tax=Hirondellea gigas TaxID=... [more]
A0A7S4HGQ5_9EUKA1.310e-3971.56Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A433B9J7_9FUNG2.820e-3867.59Putative fumarate reductase (Fragment) n=1 Tax=Jim... [more]
A0A367KSI4_RHIST6.060e-3766.97FAD_binding_2 domain-containing protein (Fragment)... [more]
A0A6B2L0T2_9EUKA6.610e-3772.92Cytochrome b5 heme-binding domain-containing prote... [more]
A0A4P9XUE6_9FUNG2.130e-3667.59Fumarate reductase (Fragment) n=1 Tax=Thamnocephal... [more]
A0A2P6P0X3_9EUKA5.650e-3671.70Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A061RG22_9CHLO6.230e-3660.87FAD_binding_2 domain-containing protein n=1 Tax=Te... [more]
I1BMN7_RHIO97.560e-3669.72Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65748contigM-pyrifera_M_contig65748:983..1318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score141.0
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog936053.I1BMN7
Preferred nameOSM2
KEGG koko:K18561
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006139,GO:0006457,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009628,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016156,GO:0016491,GO:0016627,GO:0016628,GO:0016999,GO:0017144,GO:0019637,GO:0019752,GO:0033554,GO:0034059,GO:0034641,GO:0034975,GO:0036293,GO:0036294,GO:0042221,GO:0042726,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046443,GO:0046483,GO:0050896,GO:0051186,GO:0051716,GO:0055086,GO:0055114,GO:0070482,GO:0070887,GO:0071453,GO:0071454,GO:0071704,GO:0071944,GO:0072350,GO:0072387,GO:1901360,GO:1901564
EggNOG free text desc.FAD binding domain
EggNOG OGs1GS8H@112252,38FMG@33154,3NU5S@4751,COG1053@1,COG5274@1,KOG0537@2759,KOG2404@2759
COG Functional cat.C
BiGG ReactioniMM904.YEL047C,iND750.YEL047C
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size336
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.6018808-UTR-M-pyrifera_M_contig65748:982..9851622816545.6018808-UTR-M-pyrifera_M_contig65748:982..985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65748 983..985 +
1692278038.5925837-UTR-M-pyrifera_M_contig65748:982..9851692278038.5925837-UTR-M-pyrifera_M_contig65748:982..985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig65748 983..985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816545.6168184-CDS-M-pyrifera_M_contig65748:985..13181622816545.6168184-CDS-M-pyrifera_M_contig65748:985..1318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65748 986..1318 +
1692278038.6147482-CDS-M-pyrifera_M_contig65748:985..13181692278038.6147482-CDS-M-pyrifera_M_contig65748:985..1318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65748 986..1318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65748.15969.1prot_M-pyrifera_M_contig65748.15969.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65748 986..1318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65748.15969.1

>prot_M-pyrifera_M_contig65748.15969.1 ID=prot_M-pyrifera_M_contig65748.15969.1|Name=mRNA_M-pyrifera_M_contig65748.15969.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MAANQVIVIGGGLSGLSAAHTVLERGGSVVVIDKNPFLGGNSTKATSGIN
GALTRTQISLGVKDSPDAFLHDTALSASKGASDKPYPLARVLTYGSAPAV
EWLQDSFGLDL
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mRNA from alignment at M-pyrifera_M_contig65748:983..1318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65748.15969.1 ID=mRNA_M-pyrifera_M_contig65748.15969.1|Name=mRNA_M-pyrifera_M_contig65748.15969.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig65748:983..1318+ (Macrocystis pyrifera P11B4 male)
GCAATGGCAGCGAACCAGGTTATCGTGATTGGCGGAGGCCTCTCTGGCCT
GAGTGCGGCGCACACGGTGCTGGAGCGCGGCGGCAGCGTGGTGGTGATCG
ACAAGAACCCCTTCCTGGGCGGCAACTCGACCAAGGCCACCTCCGGCATC
AACGGCGCCCTCACGCGCACGCAGATCTCGCTGGGCGTGAAGGACAGCCC
CGACGCCTTCCTGCACGACACTGCGCTGTCTGCGAGCAAGGGCGCCTCGG
ACAAGCCCTACCCGCTCGCACGCGTCCTCACCTACGGCAGCGCGCCGGCG
GTGGAGTGGCTGCAGGACTCCTTCGGCCTGGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65748:983..1318+

>mRNA_M-pyrifera_M_contig65748.15969.1 ID=mRNA_M-pyrifera_M_contig65748.15969.1|Name=mRNA_M-pyrifera_M_contig65748.15969.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig65748:983..1318+ (Macrocystis pyrifera P11B4 male)
ATGGCAGCGAACCAGGTTATCGTGATTGGCGGAGGCCTCTCTGGCCTGAG
TGCGGCGCACACGGTGCTGGAGCGCGGCGGCAGCGTGGTGGTGATCGACA
AGAACCCCTTCCTGGGCGGCAACTCGACCAAGGCCACCTCCGGCATCAAC
GGCGCCCTCACGCGCACGCAGATCTCGCTGGGCGTGAAGGACAGCCCCGA
CGCCTTCCTGCACGACACTGCGCTGTCTGCGAGCAAGGGCGCCTCGGACA
AGCCCTACCCGCTCGCACGCGTCCTCACCTACGGCAGCGCGCCGGCGGTG
GAGTGGCTGCAGGACTCCTTCGGCCTGGACCTCATGGCAGCGAACCAGGT
TATCGTGATTGGCGGAGGCCTCTCTGGCCTGAGTGCGGCGCACACGGTGC
TGGAGCGCGGCGGCAGCGTGGTGGTGATCGACAAGAACCCCTTCCTGGGC
GGCAACTCGACCAAGGCCACCTCCGGCATCAACGGCGCCCTCACGCGCAC
GCAGATCTCGCTGGGCGTGAAGGACAGCCCCGACGCCTTCCTGCACGACA
CTGCGCTGTCTGCGAGCAAGGGCGCCTCGGACAAGCCCTACCCGCTCGCA
CGCGTCCTCACCTACGGCAGCGCGCCGGCGGTGGAGTGGCTGCAGGACTC
CTTCGGCCTGGACCTC
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