mRNA_M-pyrifera_M_contig6555.15934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6555.15934.1
Unique NamemRNA_M-pyrifera_M_contig6555.15934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig6555.15934.1 vs. uniprot
Match: D8LCN8_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN8_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 3.160e-74
Identity = 147/261 (56.32%), Postives = 170/261 (65.13%), Query Frame = 1 
Query:    1 GMAGAGGGAAMAMNPGMALGGNAVAAPQVFSSFEPPPSAGPPPGADAAAPGRAGGAYDLRAWEKKGEP---DEDLHACLGVDVGSSTIKACLYLRDGGCKAVGGKAPLPACILVDRKTGVKGMRRWLKSRASGASAASPAPPKGVKLFHT-------------------GKEDNKCLVVWPLRLMALRGKGVEATQRVQSSLSHEVKVSPDNDQEAED----AETSGVRILLTSPDASDAKDKEVWCTPEEILGVLLAGVK 705
            G+A  GGGA MAM PGMA GG  +  P   S+F PP                    YDLRA   + E    DED HACLGVDVG+S+IKACLYL+DGGCK VGGKAPLPA IL+DRKTGVKG+RRWLKSRA G  A + AP KGVKLFH                      + N   VVWPLRL+ALRGKG EATQRVQSSL H+++VS    +EA D     +TSGVR+LLTSPDA++ KD+EVW TPEE+L +LLAGVK
Sbjct:   11 GIAPGGGGAGMAMGPGMAFGGTGMGTP---STFRPPXXXXXXXXXXXXXXXXXXXXYDLRAAACEAEEEELDEDTHACLGVDVGTSSIKACLYLKDGGCKTVGGKAPLPAGILIDRKTGVKGVRRWLKSRAGGGQAPA-APAKGVKLFHAVGGXXXXXXXXXXXXXXXXXXDGNGAAVVWPLRLLALRGKGAEATQRVQSSLRHDIEVSSVESKEATDDQGDGDTSGVRVLLTSPDAAETKDREVWVTPEEVLAMLLAGVK 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig6555.15934.1 vs. uniprot
Match: A0A835Z170_9STRA (Hsp70 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z170_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.720e-19
Identity = 86/227 (37.89%), Postives = 115/227 (50.66%), Query Frame = 1 
Query:   31 MAMNPGMALGGNAVAAPQVFSSFEPPPSAGPPPGADAAAPGRAGGAYDLRAWEKKGE-PDEDLHACLGVDVGSSTIKACLYLRDGGCKAVGGKAPLPACILVDRKTGVKGMRRWLKSRASGASAASPAPPKGVKLFHTGKEDNKCL-VVWPLRLMALRGKGVEATQRVQSSLSHEVKVSPDNDQEAEDAETSGVRILLTSPDASDAKDKEVWCTPEEILGVLLAGVK 705
            M M P M + GNAVA  Q   +F     AG    ADA     AGGAYDLR        P EDL ACLGV +G++T  ACLYL D G   + G+APLPA + +D KTG +G+R+W K       + S A PK V +   G+ +   L V   +RL+  R +   A  R  ++   E+  +   D  A+D  TSGV I L      +A  +   C PE +L  LL  ++
Sbjct:   17 MNMPPPM-MSGNAVALHQAPPTF----GAGAAGCADACC--GAGGAYDLRGQAAADAGPQEDLSACLGVALGATTYSACLYLADKGAVPLTGRAPLPAALWLDPKTGARGLRKWAKR-----DSRSGALPKAVTVGLRGEGEAGLLRVPAGMRLLGARHRP-GALLREAAAWPVELVEAARGDDAADD--TSGVHICLPG----EAGQEWRACEPEHLLAALLVSLR 224
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6555.15934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN8_ECTSI3.160e-7456.32Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z170_9STRA4.720e-1937.89Hsp70 protein-domain-containing protein n=1 Tax=Tr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6555contigM-pyrifera_M_contig6555:3912..13737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size705
Cds size702
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6555.15934.1prot_M-pyrifera_M_contig6555.15934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6555 3915..13737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.483807-UTR-M-pyrifera_M_contig6555:3911..39141622816543.483807-UTR-M-pyrifera_M_contig6555:3911..3914Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6555 3912..3914 +
1692278037.4154353-UTR-M-pyrifera_M_contig6555:3911..39141692278037.4154353-UTR-M-pyrifera_M_contig6555:3911..3914Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6555 3912..3914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.4969864-CDS-M-pyrifera_M_contig6555:3914..41691622816543.4969864-CDS-M-pyrifera_M_contig6555:3914..4169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 3915..4169 +
1692278037.427112-CDS-M-pyrifera_M_contig6555:3914..41691692278037.427112-CDS-M-pyrifera_M_contig6555:3914..4169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 3915..4169 +
1622816543.512353-CDS-M-pyrifera_M_contig6555:9165..92721622816543.512353-CDS-M-pyrifera_M_contig6555:9165..9272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 9166..9272 +
1692278037.4378128-CDS-M-pyrifera_M_contig6555:9165..92721692278037.4378128-CDS-M-pyrifera_M_contig6555:9165..9272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 9166..9272 +
1622816543.5266154-CDS-M-pyrifera_M_contig6555:10005..101941622816543.5266154-CDS-M-pyrifera_M_contig6555:10005..10194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 10006..10194 +
1692278037.4515533-CDS-M-pyrifera_M_contig6555:10005..101941692278037.4515533-CDS-M-pyrifera_M_contig6555:10005..10194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 10006..10194 +
1622816543.5392253-CDS-M-pyrifera_M_contig6555:13586..137371622816543.5392253-CDS-M-pyrifera_M_contig6555:13586..13737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 13587..13737 +
1692278037.4622853-CDS-M-pyrifera_M_contig6555:13586..137371692278037.4622853-CDS-M-pyrifera_M_contig6555:13586..13737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6555 13587..13737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6555.15934.1

>prot_M-pyrifera_M_contig6555.15934.1 ID=prot_M-pyrifera_M_contig6555.15934.1|Name=mRNA_M-pyrifera_M_contig6555.15934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=234bp
MAGAGGGAAMAMNPGMALGGNAVAAPQVFSSFEPPPSAGPPPGADAAAPG
RAGGAYDLRAWEKKGEPDEDLHACLGVDVGSSTIKACLYLRDGGCKAVGG
KAPLPACILVDRKTGVKGMRRWLKSRASGASAASPAPPKGVKLFHTGKED
NKCLVVWPLRLMALRGKGVEATQRVQSSLSHEVKVSPDNDQEAEDAETSG
VRILLTSPDASDAKDKEVWCTPEEILGVLLAGVK
back to top

mRNA from alignment at M-pyrifera_M_contig6555:3912..13737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6555.15934.1 ID=mRNA_M-pyrifera_M_contig6555.15934.1|Name=mRNA_M-pyrifera_M_contig6555.15934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9826bp|location=Sequence derived from alignment at M-pyrifera_M_contig6555:3912..13737+ (Macrocystis pyrifera P11B4 male)
GGCATGGCTGGTGCGGGAGGTGGTGCCGCGATGGCGATGAACCCGGGTAT
GGCCCTCGGCGGCAATGCAGTGGCCGCCCCTCAAGTCTTCTCGAGCTTCG
AGCCTCCTCCCTCGGCCGGCCCACCGCCTGGGGCTGACGCTGCCGCTCCA
GGCAGGGCTGGCGGCGCGTACGACCTCCGCGCGTGGGAGAAGAAGGGCGA
GCCGGACGAGGATTTGCATGCTTGCCTTGGCGTGGACGTGGGATCCTCGA
CCATCAAGGTAAAAGGGAAACGCCCCACACGAGAGTACATTATTTGGGTG
ATAACTGCTCTTGTGGGCTTCACACGTGGGCAATGCATGAATATGAACAT
ATATACTGCTGGTGCTGCTGTGTGCTGCACGTTGTTGCTGTAATGTCGTG
TCAAAAGTAGGTTAGGTCAAACGGTCAAACTCACCTCAGCATCAGAGCAC
CAGGACGAGTCGGCGTGGGCGTGCCCCGATCAGTGGCACCACACCCAAAG
GAAAGAGTCGGAGTTGAGCCGACGTCGGAGGAAAGCCGGTGCTTCACTGC
AAACAGTAGTACAGACTGCTGTTTATTGCCCTTTTTCAGTTTTGTTCTTG
TGTTCGATCTAAAAAAGCAGAGCAGCAGCAATGACTTACACCCCTCGTCG
TATCAGATGCAGGATGACTCGGTCGGAATGATTACTCGGACAAGCTGCTG
TACCGTGCGGTATACACTCTCGAGACGTGCCGTACCCCGGTGCAGCAACC
TATGCATGCCTCATGTGGTCGTATGTGGTCGTACGGCAGCAGTAGTCTCA
TCGTTTTTCACGGTTGACCATGTGCAATATAAATATACTCAATACGTCTT
TTTTTACCTGGCACGATGCAACAGCGGTAAAACAACAGCTGAGCAAGCCA
ATGCGAGCGTGCAGTTGCGGTACAGCCCACGTACCGTTCTCGAAGCGTGA
TGAGAGAAAGAGAGTTAGTTCCTCGGCCAAAAATTCTGGTACAGCAATAT
TAATAGTACCGCTGTCGTCGTAAACACGTCAATACCCCTTCCACGTGCCG
GCGGCGTGGCTCCCGCTGAAAAACCGAGGCCTAGTGATATCTCTGTGGCT
TACCCTATCTACCCTGCACGTCGTACGAACATGTTGCCTTAGCAGGTATG
TTGTACCTGTGGCTATCGTGCACCCCTTCCACGTGTCGGCGGCGTGACTC
CTGCCGAAAACCGAAGCCTATTACAGGGGTCATAGTTAATGGGACCAAAT
TGTGTTGGTAAAATTACAAAAATATCTAGGTTTTTATATAAACCATAGGT
CCTATTAACTATGGACCCTCGTAATAGTGATATCTCTGGCTGTGGCTCAC
CATATCTACCCTGTGCGTCGTACCAACATATCACGATAGGCACAGGTATA
GCATAAGGCAACTCACGATAGCCTCAGGTATAACATAGGGCAACATGTTC
GTACGACGCACAGGGCAGATAGGGTAAGCCACGGAGATATCACTAGGCCT
CGGTTTTCAGCAGGAGCCACGCCGCAGACACGTGTAAGGGGTATTTTTAT
ATTAACGTGTTTACGACAGCAGTATATGCTACTGCGTGTATTAATACTAC
TGGTGTACCAGGAATTTGGAGGTACTTGTGAATGCTGCTTATATACTTCG
TAACTGCTTTTGCATGTAAGTACTCGTACTTCGTAAACCCCTTGTAAAAG
TAAGTATTACCTGGTACTGCTGTACGCGGTGTTTCAAAACTGGTACCTGG
TACCGTACAACCTGGTAGGCAACCAACGTTAGCTTGTGCTGTATCAGTAC
TCGTGTACTGCTGTCTCGCGCCCGTGCCGTTGTCTCTCTCGATCATACCA
TACGGTTCGTAAAGGGTGGCATCATGCATCGACTCTATTTGCGGCGTTTG
CACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAGAGACGGGCTCTGACT
TGAGTTTCTCGCAACGATGAACATGATTCCACTGCTGTTACGACGTTTTG
CGTGTTTTTTCTTGGTACGTTTGGCTTGTGGCGACGGCGGTCACTTTTCA
CACATGGCTCAACAACTTGCGAAAACACCCCAACACGAACAGACAGGGGT
AGTCGCTATATACCGCCACGCAAACACGTGTCCCCTGCCCCCTACCTACC
ATATGGCACAACAACTTGCGAAAACACCCAACACTAACAGTCAGGGGTAA
CCGCATATATACCGCCACGCAAACCCGTGTCCCCTGCCCCCTACCTACCA
TGGCACAACAACTTGCGAAAACACCCAACACTAACAGACAGTGTGGTGAC
TGCTATATACCGCCACGCAAACACGTGTCCCCTCTCCCCTACTAACGAGG
CTCTCCGTCTACCGGTGTACCAGGTACCAGCCTGGTATGATACAATGCTG
GACAGGTGGCGAGTACACATCGTACCAGTATTATTAAGAATTGAAGAGGT
TTATTGTTCCTTGGAAAACCAAAAAAAAAAATCGCGCACCCCGTGATGTC
GTAGTACTACAGGCAGTAAGAAAACATGCATTGCGAAAGAAAGGCAGGCT
TGACATTCACAGGGGAATGAAAAAACCGGGGAGCCAAGTTTATGCCCAAG
ATTTTGTGCACGACGCACCTTTTCTCAAACATCAAAGCAGCCTAGCCAGC
GTTCCTGTCTCTTACGATTATTTGATAGTAGATTTTCTGTACTGCTGCTG
ACTGTATACCTGGTATTTATACCATGCACCGGCAATGTACCAGGCGGCTA
CTAATATCACACCTATCATGCGTGGCTCGACCGCCAGGCAAGACAAGTGT
TTCCTAAAAAGGCCGCAAACGTGGCGCGCGCGTAAAAATCGGCCTTGTCT
GTTTTCTCGCAGCTCCTGCTGCCGCCCCCCCCCCTCTCTTGTGGGAGTGC
TCACACTCCGTTTGCACCCCCAGCAGCAGCAGCTCCGGCGGCAGCAGCAT
TGTTGGCGTGTCGTGCTGGGTCTGCCCCTCGCCCTGCCCTCTTTAGATTA
GCGCCGTCCTTTAAACTCGAGCCCTCATGTTTGTGTACGAGTACTATGCG
GTAGCCCCACTGTGGCAGTGCCCCTCCCCCCCCCCCGCCTGACCGGAGTT
CCCATACAACTGCGTGTTTTCCACGCTAGATACCGATGCCTTTCACTACG
TGCGGATGGTGCGACGCAACACCATCCTAGCCGAAAAACATGAACATCGC
AAACATGACCGCCCAAAAGTCGCCACGTATACATGTACCTATCGACTATA
TCAACGACCCTTCCGATGTTGTAGGGAAAGTTGGTAGGCGTACGTATTGA
TGGTAGTCCAGTATGGTTGTTTTTGTGGCAGTAGGTGCTTCCTTAAGGTC
ATTCTTATCGCAGAGCATTTTTCCATAGTTTCCATACTGTTTTCGTGCAT
TTTTCAGTCTTTTTTTTTTCCAAATATGTGAAAATTAATTTCCTGATTTT
TTTGCTCGTGGAGAAGTTCACGAATACTGACAGAATGCCTCCGTATTTGA
TATATATCTCCAATTATTTCCAGACTTTGGAGGTTCTGGAAAAAAAAAAT
CTCCGATATGAATGAGCCTTAGTCGAGACTGCGGGAACGAGTCGTGTTCA
CCGATTTTGGATGCCGCTTGGAAGAAACGTACCTGGTGTTGATATACCGT
AGTCCATTCTGAACCCTAACGCCAGCCCCATCGCTAGAAAAGCCTAACCC
CAACCGCCTGTGAGAAAGTTCTCGGAATTAAGCTGTAATGACCAGGGCTG
TTTACGGGTCGGGTCAAACCTCGCGGGTCAGAGGGTCGTCGGGTTAAACC
TCGCGGGTCAGAGGGTCGGGTGACGGCGACCCAAACTGATGCGTGACAGT
TTGAAAACACCCTGGCCCGACCCAACCCGACCCGACCCAACCCGACCCAA
CCCGACCGGACCCGACCTGGCGGTGAGATTCGAAAAAATCCTGACCTGAC
CCGAGGGTTGGGGTCATGATCTGCGAAGAACCCTGATGATGAGCTTGTGT
GCACTATTAACTATTTTGTCGAAATTATGCCCATTCGGAAACGCCTCTGA
CGGCAGCAACACCCTTCTTAAACCGTAAACCCTCTTCCTGCTCCTCTCGG
GGGTCAGGTCGGGTCAACGTCCCCAAACTCCAGGGGTAACAGCAGCCTGC
TCTGATGTTGCGACGGGAGCTATGGGCTAAATTGACACACGACATGAAAT
TGGAACGTGGAAGTGTGGTGCGCTCAAGCTTTATTTTTACCAATCCGCCG
GAAAAAAAAAATATTCCTCAGTCGCAACCCGCATCCGGCGTCACATAGCA
GGGTCTTTTTCTCCCCCCCCTCTCCACTACGGTTCTCTCCTTCATTTTTA
TCGCGATAAGACTTGACCCAGATTTCTTCGCCCACCGTGTACCAAATCTT
CACCTACGTACAGTACAATATCTGTGTGCGTATTTTACAATTCAGCGGCC
CTCCCTTCGATGTATTCTAACAGGAAAATTTGAGATTTTGCAAGTTTGAT
AGCTGTTGTTCCATGATTTTGATAGCACTGTGTAGTTCAGTGATTTGACA
TCAGTGTTAGCATAATCACTGCCGCCTAGATGCTGGGTGGGTGAGTGGAT
GGGTCGAGAGGCATTCCTTATGGAGTTCGCAGTGGGAGGGAAGCGGGTAT
AGCATAGCAGGTTGGGGGAGTAGGGGGGGGCTCGTGACGTATTTCACAGC
GAGAAGGCGAGAACGGGGGTGCGGGGCTGCTCGTCGCGCGTGCCGTGTCC
TGACGCGACATTCCGATCCATTCTCGGAGGAGGGGTGGGTACGGCCGATG
ACACCTGCCTGTCGTCGACTGAACTGCTGTGAACATAACTGCTAGAAGCG
CTTCCTACAGCCTGTATCAGTATTTGCCGAAATATAATCTACGTGTGGTT
CAAATATTAATTATGCAAGCAGTCCATATGTTTGGGGACGCACACGTCGG
TACTCTTTGTAGAACGTCGGGTAGTTGAAGGAGACAAAAGGACACTTGTC
GTCGCCGTCGAGTTGGGAGTTTCTATTGAGACATTTCTATCCTGGCCGTA
ACCTCTGGCGGAGCCTTCCTTTCTCAATCTGTAACTGGTGGAAGGTTTCG
ACCCTGACTCTTTTTTGTACTGTAGCTGTCACCAACTTCAATTCCAAGTG
GTTTGTCCCCCTTAACGTGGGTGGGGGTAGTTCTGATCGGGGGCTGCTTT
CGTCCTTTTTTTCGTCTTGCGTCGTGCGCCGGCTGGGGTTTTGGACAAGA
GCAGGCATGCTTGTATCTGCGGGACGGAGGGTGCAAGGCTGTCGGAGGCA
AGGCCCCCCTGCCCGCTTGCATCCTGGTCGACCGCAAGACTGGTGTCAAG
GGCATGCGCAGGTGTGAGGTGGTATTAATAGCAGTAGCAGTGGTAGTTGT
AGTGGTAGTGGTAGTAGTAGTAGTAGCAGTAGCAGTAGCAGTAGCAGTAG
CAGTAGCAGTAGCAGTAGCGTTTTTGTTGGTATCGGTTGTTGGTGGTGGT
AGTGGTCGTTGGTGGTAGTAGTGGTCGTTGGTCGTTGGTGGTGGTATTGA
TCGTTGGTCGTTGGTCGTTGGTGATATTATTGGTACTATGTATCAAAGGG
TGTTAGCCCTATTTGGTTGTTGTCTGTTTCCCACCAGGTACCTGGTATCA
ACTAATATAATGGTAGTACCAACCCACGTAAACGTAATTGCTGTGAGAAA
AAGTGACCGAAAGGTTGTTTTTTCCGCTCAGTATTCTTTGGTTGGGTTAG
TCAGAAAACGGAGCAACTCCTGACTGCGACGAGGGCCTTCGGATTCACCT
GTTTCACCAATTAGCTCATGTTTTGTTGGTTTCGATTATTTTTTTTTACT
TCCAAGTTGAACCCAACCAGATTGGATTATATCGCAAACACCCTACCGAT
GTCGTTTCTGTTGTTGTGGGTGTTGCTGTTGGTGTTTCTGTTGTCGTTCT
TGCTGCTGCTACTGACGGTCGTTTCCGACCTCCAACCCCCATCCCAAACG
CTCCCGAAACCAACCTAACCCAACCCAACCCAACCCAACCCAACCCAACC
CAACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCCAAGGTGGCT
GAAGTCCCGAGCATCGGGGGCGTCCGCGGCTTCGCCCGCCCCCCCGAAGG
GCGTGAAGCTGTTCCACACCGGGAAAGAGGACAACAAGTGCCTGGTGGTG
TGGCCTCTCCGCCTCATGGCACTGAGGGGCAAGGGGGTGGAGGCGACGCA
GCGCGTGCAGTCCTCGCTGAGCCACGAGGTCAAGTGAGTAGCTACTCTGG
CGGCAAATCCCTGTAATGTGCTCGATCGAAGTATCACACCAAAGCTTGGG
AGTGTTAAAGGGTGTGTGTGTGTTTGGAGGAAATTTTCGATCTCAACTCA
CAGCTGAGTTTGAGTTTGTTTGATTTTTCCTCGAGATGAGCAGCACGCAC
GTAGAGTAGAGCTCGCCGCTTGTTCGAGAAGATGGATGGATTTGCACTTG
TGCACGAGACAGCGGGACTATTTAAAGCATTGGTTGATTTCGTTCCATTG
GAGCAGAGTTAATTTTGCTGGTCTCGTACGGTACACTTCTGGGCGAGTCG
GGTCATTTTCTCGAATACGTGGTAAGCTATGAGCACATGCCCTCCTCGTC
AAGGACATGGATTGACAAGGCCATCGAAGGTTCACGTGTACCTACTGCTG
CTGTCATGTTTTTTCGATCATTCGGATGCGATTTTGTCATGCTTTTGGTT
GGTCGCACGTCGCGGGCGATCGAAGTGTCCACGAGTCGCACAGATCTACG
ATCCCCAATAAATGATGTAGATATTTCAGGGAGAAGATATGTCTTTTGAT
CTCTTTTGATCTGTGATGGTAGCTCGTGTTGTTCGTGGGTGGAAGCCGTA
AATGTGTGTGAGTTTCTTCGCGTTAATCCGTTTTTTCTACCCGTCGATAT
CCAGCACACTCAAGTGTCCCGTGCCGATTCGTTCATCCTATACTAGCGAG
ATAAAGGCTGTGTGGTCACAAGAACTACGACACGGGAATACTCGTATAAT
AGCGCATGTTTTTTCGGGTTGGATCTGTGCTAGGAGTATATGTACAGATC
CTCCACAATATATTACAACGGCAGGTTAGGATCCAGATGATCTATCTGTA
GACAGATAGATCGTGATATGTCCGGTGTACGGATGCTGTGCTGTGATGCT
CCTACAAATGCTGCATCACGCGCGATTGTAGTATATATCCACTGTACACA
CAGCGTGCGAAATATGGTTGTCGACAAATATCGATTTCACAGCTAATAAG
GTGTATTTTGACTGTTTTACTACCACCCTGTACCCTGAATATGATGAGGA
ATGTTTTTATTATATGTTATTTCGGGGGGCCATAGTAAATAGGACCAAAT
ATTGTTAGTAAAGATAGTAAAATATACAGCTTTTTGTGGGTACCGTAGAT
CCTATTTACTATGGTCCCCCGTAATAGTGTACAACAAAAGTTCCCTCTAT
TTGTGGTACACAAAAGGCGATAAAAATATTATTCAATGTTACTCTGCATG
CGCTCATTCATATGTATATACCTCCGTTCATTCATACGTACCTGGCATAT
ATATGTATTATTAACAGAAAAACACTCGGGTATGCTCGCTTTAGTTCGAG
CAATTTCTGCAAGTGTGTTGTCCCTCGAAATTTCCATTTTTTTTTTTTCT
GTTTTTGCGTTTGTTTTATATAGATTTTTCTGGGGTTTTTTTTCCCGCAT
TTTGTTTTTCGTCATTCTCGTTGTTTCCGATTGAAAATTAGCCACAAGGC
CAAGTGAGTTGTACTACAGCTGGTACTACAGCAGCTGTGGATACAGGTAG
ACATGTCGACGCCTAGACCGGGACGTTCAGAATAATTACACGGTTTGTCG
TTGCGTTGGTTGGGTGTTGACTGTTGCTGTTGACTATTAATACTAACACC
AGGTGCCAGGTACTGACTTTCGGCTCTATACTGACTGTTGACTGACAGAC
AATGACCATTGCCTGATGACTATGAAGTACTTGTGGCGCTGTTCGCTGGT
GACTGTTGGCTGGTGCTTCTTGACTGTTGGCTTCTGACTGTTGGCTATCG
AGTGTTGACTACTTTTTTCGGCTACTGACTATTGTCCTTTGACCGAGGAG
TTCTACTATAATAGTAAGATAAGAGGTTCGCCCTAATTATTCTGAGACTC
CTTACTTGACCTTAAGGAGCTCCATAGCTCACCCGACAACTGACTTCAGC
AAAAAAATCAAATTACATCCCGATGAATAATCCCACGGCCGGCCCAAGGA
TACAAACACGTTATCTTTCGAAACAAGATTGGCTTTGCGACGATTTCGGT
GTAGGGAGCCCCGTCATTCTAAAACCATGTTAGCCGGAATGTGCTACCTG
CATCGTAGAACGCGTCGACCGTTGACTACTGTTGGTTGTTGACCGTTGGC
TTCCGTTCGCTACTGACCGTTTGTCGGTTACTGTCCGTTTGGTTCTGGTG
GCTAGTGACTGTTGGCTACCGCGCTTGGATACTGACGGTTGACCGTTACA
TAGTGACTACGAGTACGTCTAGACCGATGACTGCGCTGTGAAAATATGTC
GACCCGCTCTGTTCCATTGTCTGCCTCGTATCCTTGCGCGTCTCGCTTAT
AAAGCTACACAAACCAAACAATATAGCGTAGTAGCTCTTGCTATCAATAG
GAACTCGCACTGGTGGTTGTTTGTTAGTGTTGTTGCGCTGGTAGAAGGCA
TGTAACCCCTTGAGGACTGTACTCCCGTTCCGGGAACACGTGTCTTGAAA
TTAAAGTTAGATTATACCTGGTAGGCGTTTCTGTGAATTGCGGTACTCAA
AAGGGTTAAAAGAGGAAGTAATCGTAGATTTTCGGTCGGACGGCTGGGAT
GTCCGACTGGAGTTTTCTACAGATATCTCCGGGTTCATGCAGACCCAGCT
CGAACATTAAACCATGCCCAATGTATGCGCTACATAGGGTATCCGGCTCC
ATCCTGCTCAAGAGTAAATGTCATGCCCTGTGTTTTAGGCGCCCCTCTTT
TGCTGCAAGCAATAGACGATTTAAACCGTCCCCCCCTTGTATGTATGTCA
TATGTATACCTTCGTGTTTTTGTGCGGCAGTAACATTTCTTCGTCGCTAA
AAGTTTATAGTTTGGGACTAATGAGGCCTCTCTGCGTCGATCAGCCGGAG
ACTCTCGCGCAGGGCTACTACTGACTGCCCCGCGTTGATTGGATGGAACT
TAACGTGGCACCTCGGCGCAGACAGTAGTTACTCCGCCAAAAAAAGCACT
ACGCGTCCCTTTTTTGGGAAAGTAATTGATGACAACCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCACACCCCCACCTCCCCCCACATCCTACCGGAANN
NNNNNNNNACCGATCCCCGCTCCGGGGTGTTATTATTTCCACCCAAAAAA
AACAATACCTCCTCCTTTTTTTGGTTAAACAATTAATACCCCCCCCCCCC
CCCCCCCCCCCCCCCCCGCCAAACATGTACCACTCTGACCCAACATATAA
GGAATGATTGTATTGAATAATTTGATGCTTACGATCCCTATATTTCGGGT
CAGATTGGTATGTTCATTAAAAACATATCAATGACAACTCCCCTAATACA
CTAACGACATACCGCCTCCCCGCAGGGTTTCCCCTGATAACGACCAGGAG
GCCGAAGACGCCGAAACTTCCGGAGTCCGAATACTGCTCACCTCCCCAGA
CGCGTCGGACGCTAAGGACAAGGAGGTGTGGTGCACTCCTGAGGAGATCC
TGGGCGTGCTCCTTGCTGGGGTCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig6555:3912..13737+

>mRNA_M-pyrifera_M_contig6555.15934.1 ID=mRNA_M-pyrifera_M_contig6555.15934.1|Name=mRNA_M-pyrifera_M_contig6555.15934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1404bp|location=Sequence derived from alignment at M-pyrifera_M_contig6555:3912..13737+ (Macrocystis pyrifera P11B4 male)
ATGGCTGGTGCGGGAGGTGGTGCCGCGATGGCGATGAACCCGGGTATGGC
CCTCGGCGGCAATGCAGTGGCCGCCCCTCAAGTCTTCTCGAGCTTCGAGC
CTCCTCCCTCGGCCGGCCCACCGCCTGGGGCTGACGCTGCCGCTCCAGGC
AGGGCTGGCGGCGCGTACGACCTCCGCGCGTGGGAGAAGAAGGGCGAGCC
GGACGAGGATTTGCATGCTTGCCTTGGCGTGGACGTGGGATCCTCGACCA
TCAAGATGGCTGGTGCGGGAGGTGGTGCCGCGATGGCGATGAACCCGGGT
ATGGCCCTCGGCGGCAATGCAGTGGCCGCCCCTCAAGTCTTCTCGAGCTT
CGAGCCTCCTCCCTCGGCCGGCCCACCGCCTGGGGCTGACGCTGCCGCTC
CAGGCAGGGCTGGCGGCGCGTACGACCTCCGCGCGTGGGAGAAGAAGGGC
GAGCCGGACGAGGATTTGCATGCTTGCCTTGGCGTGGACGTGGGATCCTC
GACCATCAAGGCATGCTTGTATCTGCGGGACGGAGGGTGCAAGGCTGTCG
GAGGCAAGGCCCCCCTGCCCGCTTGCATCCTGGTCGACCGCAAGACTGGT
GTCAAGGGCATGCGCAGGCATGCTTGTATCTGCGGGACGGAGGGTGCAAG
GCTGTCGGAGGCAAGGCCCCCCTGCCCGCTTGCATCCTGGTCGACCGCAA
GACTGGTGTCAAGGGCATGCGCAGGTGGCTGAAGTCCCGAGCATCGGGGG
CGTCCGCGGCTTCGCCCGCCCCCCCGAAGGGCGTGAAGCTGTTCCACACC
GGGAAAGAGGACAACAAGTGCCTGGTGGTGTGGCCTCTCCGCCTCATGGC
ACTGAGGGGCAAGGGGGTGGAGGCGACGCAGCGCGTGCAGTCCTCGCTGA
GCCACGAGGTCAAGTGGCTGAAGTCCCGAGCATCGGGGGCGTCCGCGGCT
TCGCCCGCCCCCCCGAAGGGCGTGAAGCTGTTCCACACCGGGAAAGAGGA
CAACAAGTGCCTGGTGGTGTGGCCTCTCCGCCTCATGGCACTGAGGGGCA
AGGGGGTGGAGGCGACGCAGCGCGTGCAGTCCTCGCTGAGCCACGAGGTC
AAGGTTTCCCCTGATAACGACCAGGAGGCCGAAGACGCCGAAACTTCCGG
AGTCCGAATACTGCTCACCTCCCCAGACGCGTCGGACGCTAAGGACAAGG
AGGTGTGGTGCACTCCTGAGGAGATCCTGGGCGTGCTCCTTGCTGGGGTC
AAGGGTTTCCCCTGATAACGACCAGGAGGCCGAAGACGCCGAAACTTCCG
GAGTCCGAATACTGCTCACCTCCCCAGACGCGTCGGACGCTAAGGACAAG
GAGGTGTGGTGCACTCCTGAGGAGATCCTGGGCGTGCTCCTTGCTGGGGT
CAAG
back to top