mRNA_M-pyrifera_M_contig107371.1576.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A2E5KAL7_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5KAL7_9PLAN) HSP 1 Score: 142 bits (358), Expect = 1.600e-39 Identity = 75/167 (44.91%), Postives = 108/167 (64.67%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPLDESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLR 501
YR ++R A + L S + RVD SD++Q+T LD+ RD GFRGE EAEW GW+++ILE+NV + IRRH QKR++R E +D S++ R ++ +PS R M+ E+ V + + + ++ DQR+A+ LRY EG +L Q+AE RSE AVA LL R + LR
Sbjct: 28 YRPYLRILALRYLDSGVRQRVDPSDVIQQTCLDIHRDIGGFRGEHEAEWIGWVRRILENNVNQVIRRHIQAQKRSVRKEVKIDNSSAAHRIQRAGPVSNESSPSQRVMRGEQAVRLAMLLGRLPEDQREALRLRYLEGKTLQQIAESITRSEMAVAGLLKRGLRNLR 194
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A2E0S7H4_9BACT (RNA polymerase subunit sigma-70 n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2E0S7H4_9BACT) HSP 1 Score: 140 bits (354), Expect = 6.410e-39 Identity = 80/170 (47.06%), Postives = 111/170 (65.29%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPLDESNSHGGSLRDRLAGD---QDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLR 501
YR ++R A + L S + RVD SD++Q+T LD+ RD GFRG+ EAEW GW+++ILE+NV + IRRH QKR++R E +D+S+ G+ R AG + +PSHR M+ E V + I + K+ QR+AI LRY EG +L Q+A+ GRSE AVA LL R + LR
Sbjct: 28 YRPYLRILALRYLDSGVRQRVDPSDVIQQTCLDIHRDIDGFRGDHEAEWIGWVRRILENNVNQVIRRHIQAQKRSVRKETVVDKSS---GAHRIYNAGPVSKESSPSHRVMKGERAVRLAIMLGKLPEVQREAIRLRYLEGRTLQQIAKSIGRSEMAVAGLLKRGLRSLR 194
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A2E6WCH8_9BACT (RNA polymerase subunit sigma-70 n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E6WCH8_9BACT) HSP 1 Score: 138 bits (347), Expect = 7.270e-38 Identity = 78/170 (45.88%), Postives = 112/170 (65.88%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPLDESNSHGGSLRDRLAG---DQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLR 501
YR ++R A + L S + +RVD SD++Q+T LD+ RD GFRG EAEW GW+++ILE+NV + IRRH QKR+IR E +D+S+ + R R AG ++ +PS R M+ E+ V + + + K+ DQR+A+ LRY EG +L ++AE RSE AVA LL R + LR
Sbjct: 28 YRPYLRILALRYLDSGVRSRVDPSDVIQQTCLDIHRDIDGFRGAHEAEWIGWVRKILENNVNQVIRRHIQTQKRSIRKEAIVDQSSR---AHRIRNAGPVSNESSPSQRVMRGEQAVRLAMLLGKLPQDQREALRLRYLEGKTLLEIAERLDRSEMAVAGLLKRGLRSLR 194
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A5C6E0K0_9BACT (ECF RNA polymerase sigma-E factor n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6E0K0_9BACT) HSP 1 Score: 127 bits (318), Expect = 1.970e-33 Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAE----KPLDESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQL 510
YR F+ A + L RL R+D SDIVQ T L+ +RD + FRGES AE+AGWL+ IL++NVA A+ RH QKR+++ E KP+ + +S GG +L G +PS A++ E T ++ A+ ++ Q +AI LRY EG SL+++ E G+S+ AVA LL R ++++R L
Sbjct: 29 YRGFLLMLAHRYLSERLRRRIDPSDIVQLTFLEAKRDLSSFRGESPAEFAGWLRGILKNNVATAVTRHVTTQKRSLKREIEGDKPI-KGDSAGGGWIAQLPGSTTSPSGVAIRGEATFALLEALHQLPETQAEAIRLRYMEGLSLAEIVERMGKSDTAVAGLLKRGLQKMRTIL 201
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A517N402_9BACT (ECF RNA polymerase sigma factor SigG n=3 Tax=Rubripirellula TaxID=1579505 RepID=A0A517N402_9BACT) HSP 1 Score: 121 bits (304), Expect = 4.810e-31 Identity = 70/174 (40.23%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAE---KPLDESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQLS 513
YR ++ A + L RL RVD SDIVQ T L+ +RD GFRGE+ AE+AGWL+ +L++NVA A+ RH QKR+++ E P + G +L G +PS A+++E +++ A+ ++ Q +AI LRY EG L+++ E G+S+ AVA LL R +++LR L+
Sbjct: 55 YRGYLIMLAHRYLSERLRRRVDPSDIVQLTFLEAKRDLPGFRGETPAEFAGWLRGMLKNNVATAVTRHVTTQKRSLKREVHVAPASPNQDSGAGWLGQLPGSTTSPSGVAIRSEAVLALVEALHQLPETQAEAIRLRYMEGLPLAEIVERMGKSDTAVAGLLKRGLQKLRTLLT 228
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A5C6FF70_9BACT (RNA polymerase sigma factor n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6FF70_9BACT) HSP 1 Score: 120 bits (300), Expect = 9.850e-31 Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAE---KPLDESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQLS 513
YR ++ A + L RL RVD +DIVQ T L+ +RD FRGE+ AE+AGWL+ +L++NVA A+ RH +KR++R E P + G + +L G +PS A++ E +++ A+ ++ Q +AI LRY EG LS + E G+S+ AVA LL R +++LR LS
Sbjct: 29 YRGYLLMLAHRYLSERLRRRVDPADIVQLTFLEAKRDLPSFRGETPAEFAGWLRGMLKNNVATAVTRHITTKKRSVRREVNMAPASANQDSGAAWLGQLPGSTTSPSGVAIRGEAVLALVEALHQLPETQAEAIRLRYMEGLPLSDIVERMGKSDTAVAGLLKRGLQKLRTVLS 202
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A5C5Z3D3_9BACT (ECF RNA polymerase sigma-E factor n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z3D3_9BACT) HSP 1 Score: 120 bits (301), Expect = 1.940e-30 Identity = 69/174 (39.66%), Postives = 110/174 (63.22%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAE----KPLDESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQL 510
YR ++ A + L RL R+D SDIVQ T L+ +RD FRG++ AE++GWL+ IL++NVA ++ RH QKR+++ E KP + ++ GG + L G +PS A++ E T+++ A+ ++ Q +AI LRY EG +L+++ E G+S+ AVA LL R +++LR L
Sbjct: 70 YRGYLLMLAHRYLSERLRRRIDPSDIVQLTFLEAKRDLESFRGDTPAEFSGWLRGILKNNVATSVTRHITTQKRSLKREVEGDKPANNDSAGGGWIT-LLPGSSTSPSGAAIRDEATLALLEALHQLPETQAEAIRLRYMEGLTLAEIVERMGKSDTAVAGLLKRGLQKLRTTL 242
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A2D7E269_9BACT (RNA polymerase factor sigma-70 n=5 Tax=Bacteria TaxID=2 RepID=A0A2D7E269_9BACT) HSP 1 Score: 119 bits (297), Expect = 1.970e-30 Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPLDESNSHGG-SLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQL 510
Y ++R AR QL +V SD+VQ+ +L + F GFRG +EAE GWL+QIL H++ + R H KR +R E+ +++ +H L LAG TPS M E + + A++ + QR+AI L Y EG LS++AE G++ GA+A LLHR ++ LR QL
Sbjct: 24 YEPYLRMLARIQLRRAFQAKVGASDMVQQAMLQAVQGFDGFRGSTEAELRGWLRQILAHHICH-LDRDMHRDKRDVRREQSMEQKLAHSSLRLEGLLAGQSPTPSQNVMLGENVIQMAEAVESLPESQREAIRLHYLEGLKLSEVAEITGKTSGAIAGLLHRGMKTLRQQL 193
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: A0A518H3J5_9BACT (ECF RNA polymerase sigma-E factor n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518H3J5_9BACT) HSP 1 Score: 117 bits (292), Expect = 1.440e-29 Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPLDESNSHGGSLRDR-LAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQL 510
YR ++R AR ++G RL T++D D+VQ+ L R F FRG+SEAE+ GWL+QIL +A +RR+ R +R E+ E+ + DR L +PSHRA + E + +A+D++ D R+AI LR EG ++A RSE +V L RA+ RLR +L
Sbjct: 29 YRPYLRLLARVRIGDRLRTKLDPEDVVQDAFLRAHRGFGRFRGDSEAEFLGWLRQILAAELANQVRRYLGTGGRDLRLEREFGEALDRTSAALDRGLVSPDSSPSHRAERGERLARLAVALDRLPEDYREAIVLRQFEGLGFPEVASRMARSEDSVKHLWARALGRLRREL 199
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Match: UPI0019A76A22 (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019A76A22) HSP 1 Score: 116 bits (290), Expect = 2.150e-29 Identity = 68/177 (38.42%), Postives = 107/177 (60.45%), Query Frame = 1
Query: 1 YRDFMRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKQILEHNVAEAIRRHDHVQKRTIRAEKPL-DESNSHGGSLRDRLAGDQDTPSHRAMQAEETVSINIAIDKMTPDQRQAIFLRYTEGYSLSQMAEHFGRSEGAVASLLHRAVERLRCQLSNGRQD 528
+R ++ AR + S ++D S IVQ+TL+D FRG +EAE AGWL+QIL+HN+A+A+R KR +R E+ L DE ++ + LA Q +PS RA + E+ + ++ I K+ QR+A+ L + +G+SL+ +A+ G+SE AVA LL R ++ L LS G ++
Sbjct: 15 FRPYLALLARTHINSHNPAKLDSSGIVQQTLMDAFAKREQFRGSTEAELAGWLRQILKHNLADALR-DQRRDKRDVRRERSLEDEIDASFSRTHEWLAAVQSSPSQRAAKQEDVLRLSEVISKLPEAQREAVVLHHLQGWSLADVAKQIGKSEAAVAGLLFRGLKTLHSLLSRGSEE 190 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107371.1576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig107371.1576.1 >prot_M-pyrifera_M_contig107371.1576.1 ID=prot_M-pyrifera_M_contig107371.1576.1|Name=mRNA_M-pyrifera_M_contig107371.1576.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp MRTQARQQLGSRLSTRVDHSDIVQETLLDVQRDFAGFRGESEAEWAGWLKback to top mRNA from alignment at M-pyrifera_M_contig107371:82..621- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig107371.1576.1 ID=mRNA_M-pyrifera_M_contig107371.1576.1|Name=mRNA_M-pyrifera_M_contig107371.1576.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig107371:82..621- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig107371:82..621- >mRNA_M-pyrifera_M_contig107371.1576.1 ID=mRNA_M-pyrifera_M_contig107371.1576.1|Name=mRNA_M-pyrifera_M_contig107371.1576.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig107371:82..621- (Macrocystis pyrifera P11B4 male)back to top |