mRNA_M-pyrifera_M_contig107352.1573.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A1G0JIK8_9GAMM (Lycopene_cyc domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_12_47_11 TaxID=1798301 RepID=A0A1G0JIK8_9GAMM) HSP 1 Score: 297 bits (761), Expect = 6.070e-100 Identity = 133/191 (69.63%), Postives = 154/191 (80.63%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQR 573
L TMPFGLTEPLFVPEYW+PPSLF+LA TGFDIESLIFCFGIGGV VLYNVI+G PVS AY RSPLHRHH+LA+A+PFI FP LYF PWNPIY ++M G IAT+LCRPDLK TW+G +LF YYW F+ GIE L+PGYVE+VWNL+ALSG+++ P+EEL FA FG YWAGVY HF+W +
Sbjct: 38 LFTMPFGLTEPLFVPEYWSPPSLFNLALTTGFDIESLIFCFGIGGVGVVLYNVITGAHFGPVSEAYHRSPLHRHHKLAIATPFIAFPLLYFFPWNPIYPAFVSMITGTIATILCRPDLKAKTWVGGVLFLIYYWFFVEGIELLSPGYVEQVWNLDALSGVIILNSPLEELIFAFTFGMYWAGVYEHFTWMK 228
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A524QGX4_9GAMM (Lycopene_cyc domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524QGX4_9GAMM) HSP 1 Score: 291 bits (744), Expect = 3.530e-97 Identity = 133/191 (69.63%), Postives = 158/191 (82.72%), Query Frame = 1
Query: 7 TMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPV 579
T PFGLTEPLFVPEYW+PPSLFDLA RTGFDIESL+FCFGIGGVAAV+YNV++GT LEP+S RR PLH+HH ALA+PF+VFP LY LP NPIY GI AM VG + T+LCRPDLKT TW+G ++F YY F+ G+E L+PGYV+RVWNL+ALSG+++ +P EEL FAA FG YW+GVY HFSW+R V
Sbjct: 39 TAPFGLTEPLFVPEYWSPPSLFDLALRTGFDIESLVFCFGIGGVAAVIYNVLTGTNLEPLSEQERRLPLHKHHYKALAAPFVVFPLLYLLPVNPIYPGIAAMIVGTVTTILCRPDLKTKTWVGGVVFTIYYAAFVLGLEWLSPGYVQRVWNLDALSGLLMGPVPFEELAFAAVFGMYWSGVYDHFSWRRLV 229
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A1F6U298_9PROT (Lycopene_cyc domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RIFCSPLOWO2_01_FULL_60_18 TaxID=1817768 RepID=A0A1F6U298_9PROT) HSP 1 Score: 282 bits (721), Expect = 9.370e-94 Identity = 128/194 (65.98%), Postives = 152/194 (78.35%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPVP 582
L T PFGLTEPLFVPEYW PPSLFDLA+RTGFDIES IF FGIGGVAAVLY+V++G P+++ + PLHRHH ALA+PFI FP LYF PWNPIY GI+AM +G +AT+LCRPDLKT TW+G +LF GYY IF+ G+E APGYV R WNL AL M+ G+P+EEL +A FG YW+GVY HF+W+R P
Sbjct: 38 LFTAPFGLTEPLFVPEYWNPPSLFDLASRTGFDIESPIFTFGIGGVAAVLYSVLTGRATRPMASHEKYRPLHRHHYKALAAPFITFPILYFFPWNPIYPGIVAMLIGAVATVLCRPDLKTKTWIGGVLFLGYYIIFLQGLEWSAPGYVARAWNLAALXXXMLFGMPLEELAWAVAFGLYWSGVYEHFTWRRLAP 231
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A1B4XER4_9GAMM (Lycopene_cyc domain-containing protein n=1 Tax=Sulfuricaulis limicola TaxID=1620215 RepID=A0A1B4XER4_9GAMM) HSP 1 Score: 281 bits (720), Expect = 1.420e-93 Identity = 128/197 (64.97%), Postives = 153/197 (77.66%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPVPAEN 591
L TMPFGL+EPLFVP+YW PPSLF LA TGFDIESLIF F IGG AAVLY +++G +P++ + PLHRHH ALASPFI FP LYFLPWNPIY GIIAM +G +AT++CRPDLKT TW+G +LF YY +F+ G+E APGY+ERVWNL ALSG++V GIPIEEL +A FG YW+GVY HF+W AE+
Sbjct: 38 LFTMPFGLSEPLFVPKYWNPPSLFSLAQYTGFDIESLIFTFAIGGAAAVLYPILTGRGTQPMAVRDKHQPLHRHHYKALASPFIAFPILYFLPWNPIYPGIIAMAIGAVATVVCRPDLKTKTWVGGLLFLSYYIVFLLGLEWSAPGYIERVWNLSALSGLLVLGIPIEELAWAIAFGLYWSGVYEHFTWSSLTRAES 234
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A7Y2G9X4_9BACT (Lycopene_cyc domain-containing protein n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2G9X4_9BACT) HSP 1 Score: 281 bits (718), Expect = 2.970e-93 Identity = 128/191 (67.02%), Postives = 149/191 (78.01%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQR 573
L TMPFGLTEPLFVPEYW+PPSLFDLA RTGFDIESLIFCFGIGGV AVL+N I+ RL+ VS R SP HR H ALASPF++FP LY +PWNPIY I+AM VG AT+LCRPDLK+ T +G + F YY +F+ G+E APGY+ERVWNL+ LSG+ + G P+EEL FA FG YWAGVY HF+W R
Sbjct: 37 LFTMPFGLTEPLFVPEYWSPPSLFDLALRTGFDIESLIFCFGIGGVGAVLFNAIAQRRLQTVSREERHSPRHRFHNWALASPFLIFPLLYVIPWNPIYPSIVAMIVGAAATVLCRPDLKSATLVGGVTFLAYYLVFLVGLELTAPGYIERVWNLDVLSGLSIFGFPLEELMFAVAFGAYWAGVYEHFTWHR 227
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A0S2TF44_9GAMM (Lycopene_cyc domain-containing protein n=1 Tax=Candidatus Tenderia electrophaga TaxID=1748243 RepID=A0A0S2TF44_9GAMM) HSP 1 Score: 280 bits (716), Expect = 5.400e-93 Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPV 579
L T PFGLTEPLFVPEYW PPSLFDLA RTGFDIESLIFCF IGG+ AVLYNV +G VS R S HR+HR ALASPF+ FP +YFLPWNPIY GI+AM VG IATMLCRPDL T +W+G +LF YY +F++G+E APGY++R+WNLEALSG+ + +P+EEL FA FG YW+GVY HF+W RP
Sbjct: 38 LFTAPFGLTEPLFVPEYWNPPSLFDLAQRTGFDIESLIFCFAIGGIGAVLYNVFTGKTTAMVSHDERCSLRHRYHRYALASPFLAFPLIYFLPWNPIYPGIVAMAVGTIATMLCRPDLATKSWVGGLLFLLYYVVFLTGLEWSAPGYIDRIWNLEALSGVTLLRMPLEELLFAVTFGMYWSGVYEHFTWARPA 230
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A1F6U4R0_9PROT (Lycopene_cyc domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RIFCSPHIGHO2_02_FULL_65_16 TaxID=1817766 RepID=A0A1F6U4R0_9PROT) HSP 1 Score: 279 bits (713), Expect = 1.490e-92 Identity = 129/197 (65.48%), Postives = 152/197 (77.16%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPVPAEN 591
L T PFGLTEPLFVPEYW PPSLF LA RTGFDIESL+F F IGGVAAVLY+ I+ +P++A R PLHRHH AL SPFI FP LY LPWNPIY GI+AM +G AT+ CRPDLKT TW+G +LF YY +F+ G+E APGY+ERVWNL+ALSG+++ G+PIEEL FAA FG YW+GVY HF+W+R A
Sbjct: 38 LFTAPFGLTEPLFVPEYWDPPSLFSLAQRTGFDIESLVFTFAIGGVAAVLYSAITRRGTQPMAAHERHRPLHRHHYKALVSPFIAFPILYVLPWNPIYPGIVAMTIGAAATIACRPDLKTKTWVGGLLFLIYYAVFLLGLEWSAPGYIERVWNLKALSGVLLLGMPIEELLFAAVFGMYWSGVYEHFAWRRVAGAPR 234
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A524QZT1_9BACT (Lycopene_cyc domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524QZT1_9BACT) HSP 1 Score: 278 bits (712), Expect = 2.870e-92 Identity = 123/186 (66.13%), Postives = 149/186 (80.11%), Query Frame = 1
Query: 22 LTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPV 579
L+EPLFVPEYW+PPSLF+LA+ TGFDIESLIF FGIGGV+AVLYNV++G RL PV A RR P HRHHR A+A+PFI FP LY PWNPIY ++AM +G +AT+LCR DLK TW+G LF GYYW+F+ G+E L+PGYV+RVWNL LSG+M+ P+EEL FA FG YWAGVY HF+W++ V
Sbjct: 44 LSEPLFVPEYWSPPSLFNLASHTGFDIESLIFSFGIGGVSAVLYNVLTGARLAPVDEASRRLPAHRHHRRAIAAPFIAFPVLYVFPWNPIYPALLAMIIGSVATLLCRLDLKHKTWIGGALFTGYYWVFVEGLELLSPGYVDRVWNLADLSGVMIHSTPLEELAFAFAFGTYWAGVYEHFTWRKVV 229
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: Q0F1M2_9PROT (Lycopene_cyc domain-containing protein n=2 Tax=Mariprofundus ferrooxydans TaxID=314344 RepID=Q0F1M2_9PROT) HSP 1 Score: 275 bits (704), Expect = 8.690e-92 Identity = 121/191 (63.35%), Postives = 153/191 (80.10%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQR 573
L TMPFGL+EPLFVPEYW PPSLF+LA TGFDIESLIFCFGIGG+A+V YN+I+ +PVS A + PLH+HH ALA+PF+ FP LY LPWNPIY I+AMF+G +A MLCRPD+K +W+G +LF YY +F++G+E APGY+ERVWNL +LSG+ + +P+EEL FA GFG YW+GVY HF+W++
Sbjct: 6 LFTMPFGLSEPLFVPEYWHPPSLFNLAASTGFDIESLIFCFGIGGIASVAYNLITQQAPQPVSQAEKSRPLHKHHYTALAAPFVSFPILYLLPWNPIYPSIVAMFIGALANMLCRPDIKRKSWIGGLLFLLYYALFLAGLEWSAPGYIERVWNLASLSGISMASMPVEELLFAIGFGMYWSGVYEHFTWRK 196
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Match: A0A1F6TLB8_9PROT (Lycopene_cyc domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_65_34 TaxID=1817760 RepID=A0A1F6TLB8_9PROT) HSP 1 Score: 273 bits (698), Expect = 2.850e-90 Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 1
Query: 1 LSTMPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVISGTRLEPVSAAYRRSPLHRHHRLALASPFIVFPPLYFLPWNPIYAGIIAMFVGGIATMLCRPDLKTITWLGAILFAGYYWIFISGIERLAPGYVERVWNLEALSGMMVKGIPIEELFFAAGFGFYWAGVYGHFSWQRPVPAEN 591
L T PFGLTEPLFVP+YW+PPSLFDLA RTGFD+ES IF F IGGVAAVLY+ I+ + P+ R PLHRHH ALASPF+ FP LYFLPWNPIY GI AM +G +AT+ CRPDLKT TW+G +LF YY +F+ G+E APGY+ R WNL ALSG +V G+P+EEL +A FG YW+GVY HF+W+R A +
Sbjct: 38 LFTAPFGLTEPLFVPDYWSPPSLFDLAGRTGFDLESPIFTFAIGGVAAVLYSAITRRGMRPMPMHEIRKPLHRHHYKALASPFVAFPLLYFLPWNPIYPGIAAMLIGAVATVFCRPDLKTKTWVGGLLFLVYYAVFLLGLEWTAPGYIARTWNLSALSGALVVGMPLEELLWAFAFGMYWSGVYEHFTWRRVAGAPH 234 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107352.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig107352.1573.1 >prot_M-pyrifera_M_contig107352.1573.1 ID=prot_M-pyrifera_M_contig107352.1573.1|Name=mRNA_M-pyrifera_M_contig107352.1573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp MPFGLTEPLFVPEYWTPPSLFDLANRTGFDIESLIFCFGIGGVAAVLYNVback to top mRNA from alignment at M-pyrifera_M_contig107352:2..601+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig107352.1573.1 ID=mRNA_M-pyrifera_M_contig107352.1573.1|Name=mRNA_M-pyrifera_M_contig107352.1573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig107352:2..601+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig107352:2..601+ >mRNA_M-pyrifera_M_contig107352.1573.1 ID=mRNA_M-pyrifera_M_contig107352.1573.1|Name=mRNA_M-pyrifera_M_contig107352.1573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig107352:2..601+ (Macrocystis pyrifera P11B4 male)back to top |