mRNA_M-pyrifera_M_contig10735.1572.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10735.1572.1
Unique NamemRNA_M-pyrifera_M_contig10735.1572.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   43 MLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            M+ YALM+RDEFVSHVIDEAC G GT E+LLIDV
Sbjct:    1 MMRYALMKRDEFVSHVIDEACSGLGTNESLLIDV 34
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: A0A0M0J561_9EUKA (Annexin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J561_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-8
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            R +VK + GGNY +M++YAL  R E+V  +ID+AC+G+GT E +LI++
Sbjct:  145 REEVKGETGGNYGRMMYYALGSRTEYVIDMIDKACEGWGTAEMILIEL 192
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: A0A7S4F1F4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F1F4_CHRCT)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            R  VK + GG+Y +M++YA+  RD +++ VID+AC GFG  E++L+D+
Sbjct:  142 RKVVKGETGGDYGRMMYYAMSSRDSYIADVIDQACGGFGCDESMLVDL 189
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: A0A7S0LFJ1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LFJ1_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.290e-6
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            R  VK + GG+Y +M+++A+  R+ +V+ VID AC GFG  E+ L+D+
Sbjct:   81 RKVVKGETGGDYGRMMYFAMSSRESYVADVIDYACAGFGCDESALVDL 128
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: A0A7S0IXQ1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IXQ1_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            R  VK + GG+Y +M+ YA+  R+ +VS VID +C G G  E  L+D+
Sbjct:  142 RKVVKGETGGDYGRMMFYAMSSRESYVSDVIDVSCSGIGCNEQALVDL 189
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BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Match: A0A7S2BC38_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BC38_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 6.150e-5
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV 144
            R +VK + GGNY KM++YA+  + E+V  ++D AC GF      LI++
Sbjct:   73 RDEVKGETGGNYGKMMYYAMSSKTEYVIDMLDFACGGFFNNYMALIEL 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10735.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LG01_ECTSI2.730e-979.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0M0J561_9EUKA1.300e-850.00Annexin n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
A0A7S4F1F4_CHRCT1.780e-845.83Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0LFJ1_9EUKA1.290e-643.75Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0IXQ1_9EUKA5.010e-643.75Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S2BC38_9EUKA6.150e-541.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10735contigM-pyrifera_M_contig10735:9206..9349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D8LG01
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.4042432-CDS-M-pyrifera_M_contig10735:9205..93491622815583.4042432-CDS-M-pyrifera_M_contig10735:9205..9349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10735 9206..9349 +
1692277474.409115-CDS-M-pyrifera_M_contig10735:9205..93491692277474.409115-CDS-M-pyrifera_M_contig10735:9205..9349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10735 9206..9349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10735.1572.1prot_M-pyrifera_M_contig10735.1572.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10735 9206..9349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10735.1572.1

>prot_M-pyrifera_M_contig10735.1572.1 ID=prot_M-pyrifera_M_contig10735.1572.1|Name=mRNA_M-pyrifera_M_contig10735.1572.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
RSQVKSDVGGNYKKMLHYALMERDEFVSHVIDEACDGFGTRETLLIDV
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mRNA from alignment at M-pyrifera_M_contig10735:9206..9349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10735.1572.1 ID=mRNA_M-pyrifera_M_contig10735.1572.1|Name=mRNA_M-pyrifera_M_contig10735.1572.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig10735:9206..9349+ (Macrocystis pyrifera P11B4 male)
CGATCGCAGGTGAAAAGCGATGTCGGCGGCAACTACAAGAAGATGCTGCA
CTACGCGTTGATGGAGCGGGACGAGTTCGTGAGCCATGTCATCGACGAAG
CTTGCGACGGCTTCGGCACACGGGAGACGCTCCTCATCGACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10735:9206..9349+

>mRNA_M-pyrifera_M_contig10735.1572.1 ID=mRNA_M-pyrifera_M_contig10735.1572.1|Name=mRNA_M-pyrifera_M_contig10735.1572.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig10735:9206..9349+ (Macrocystis pyrifera P11B4 male)
CGATCGCAGGTGAAAAGCGATGTCGGCGGCAACTACAAGAAGATGCTGCA
CTACGCGTTGATGGAGCGGGACGAGTTCGTGAGCCATGTCATCGACGAAG
CTTGCGACGGCTTCGGCACACGGGAGACGCTCCTCATCGACGTGCGATCG
CAGGTGAAAAGCGATGTCGGCGGCAACTACAAGAAGATGCTGCACTACGC
GTTGATGGAGCGGGACGAGTTCGTGAGCCATGTCATCGACGAAGCTTGCG
ACGGCTTCGGCACACGGGAGACGCTCCTCATCGACGTG
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