mRNA_M-pyrifera_M_contig106760.1447.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106760.1447.1
Unique NamemRNA_M-pyrifera_M_contig106760.1447.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A7S0MBN6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MBN6_9CRYP)

HSP 1 Score: 134 bits (336), Expect = 3.490e-34
Identity = 64/146 (43.84%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    4 ALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTT--ECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLK 435
            A+AV  T+QFQ WQG+KQ+ +GL+P+Q  HT+A  Q ++T + A  V+      +  H F  T  +  L+  SC++A+ +N+ +FGLIG+TSAVT+QVVGHAKT LIL+ GF+ +PP  A   ++++N++G+A+A+ G++ Y +L+
Sbjct:  207 AIAVVSTAQFQSWQGSKQKQYGLSPIQCTHTVALPQCLITLLFASAVE----KDVLQHRFHETGIDVALVLASCIIAMVMNVTTFGLIGKTSAVTFQVVGHAKTCLILSAGFIFFPPTDASLPQLLKNIMGLAVAVGGMVLYGHLR 348          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: L1K117_GUITC (TPT domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K117_GUITC)

HSP 1 Score: 132 bits (332), Expect = 6.140e-34
Identity = 63/145 (43.45%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    7 LAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTT--ECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLK 435
            +AV  T+QFQ+WQG+KQ+ HGL+ +Q  H++A  Q ++T    +VV+      +T H F +   +  LI L+C++A+ +N+ SFGLIG+TSAVT+QVVGHAKT LI+  GF+ +PPA+  + + ++NL G+ +A++G++ Y ++K
Sbjct:  171 IAVLTTAQFQLWQGSKQKQHGLSAIQITHSIALPQTLITLASVVVVE----PNVTSHTFSSNYVDVALIVLTCLIAMVMNVTSFGLIGKTSAVTFQVVGHAKTCLIIASGFIFFPPAYFSANE-IKNLFGLFVAILGMVLYGHIK 310          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A7S0F3C2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F3C2_9CRYP)

HSP 1 Score: 130 bits (327), Expect = 3.260e-33
Identity = 62/145 (42.76%), Postives = 102/145 (70.34%), Query Frame = 1
Query:    7 LAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTT--ECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLK 435
            +AV  T+QFQ+WQG+KQ+ HGL+ +Q  H++A  Q ++T    +VV+      +T H F +   +  LI L+C++A+ +N+ SFGLIG+TSAVT+QVVGHAKT LI+  GF+ +PP +  + + ++NL G+ +A++G++ Y ++K
Sbjct:  170 VAVLTTAQFQLWQGSKQKQHGLSAIQITHSIALPQTLITLASVVVVE----PNVTSHTFSSNYVDVALIVLTCLIAMVMNVTSFGLIGKTSAVTFQVVGHAKTCLIIASGFIFFPPTYFSANE-IKNLFGLFVAILGMVLYGHIK 309          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A0L0D9T2_THETB (Drug/Metabolite transporter superfamily protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9T2_THETB)

HSP 1 Score: 129 bits (324), Expect = 6.640e-33
Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKVNAA 447
            G  A   T+QFQI+QG+ Q  +G+  +Q    + P Q++LT ++AL+V+  G+  +          +LI LSC+ AIAVNL SF LIG+TS VTYQVVGH KTIL+LT GFL +    +  G   +NL+G+A+A+ GVI Y +LK+  A
Sbjct:  186 GLAATIATAQFQIYQGSCQSEYGVTSVQATAAITPYQSVLTLLVALMVEVPGEDSVLNFRLTAPAFILIVLSCLGAIAVNLVSFALIGKTSPVTYQVVGHLKTILVLTFGFLFFTQVESAEGAA-KNLLGVAVAMAGVILYGHLKIKIA 333          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A0L0D5Z1_THETB (Drug/Metabolite transporter superfamily protein (Fragment) n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5Z1_THETB)

HSP 1 Score: 118 bits (296), Expect = 5.620e-30
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKVNA 444
            G  AV  TSQFQI+QG+ Q + G+  +Q   ++ P QA   G +AL V+  G   +  +    T  +L+  SC  A+AVNL +F LIG+TSAVTYQVVGHAKT+LI T  F+L+P  H D   +V +L  I +A+ G + Y ++K  A
Sbjct:   69 GLGAVVSTSQFQIFQGSCQSSAGVTAIQATASVTPYQAAFAGGIALFVEVPGKNSVLDYEMSATAAVLMVCSCAGAVAVNLAAFALIGKTSAVTYQVVGHAKTVLIFTASFILFP-FHGD---VVSSLFSITLAIAGAVLYGHIKAKA 212          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A1J4KDF1_9EUKA (Integral membrane protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KDF1_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 6.650e-28
Identity = 59/156 (37.82%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 LAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMV-RNLIGIAIALVGVISYSYLKVNAAXXXXXSSP 471
            + V C + FQ   G+KQR + +N     H  A  Q ++  + A  ++  G   I  H FQT E ++I ++  +A++VN+CSFGLIG+TSAVTYQVVGH KTILI   G +++PP   ++ +   + + G+ I++ G+I Y+YL++         SP
Sbjct:  154 IGVTCVAVFQTKTGSKQREYNVNGPALQHATAFPQFVMALLSACAIETHGTNSIFTHDFQTKEIIMITITGFIAVSVNVCSFGLIGKTSAVTYQVVGHVKTILIFVFGLIMFPPNKNETKEQFYKKIAGLVISMTGMIYYTYLELQQKEASTKPSP 309          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A0M0J6F9_9EUKA (Drug metabolite transporter superfamily n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J6F9_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 5.640e-27
Identity = 61/168 (36.31%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVD-----------------------FRGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLK 435
            G LAV  T+ FQIWQG KQ+  G++  Q    +AP Q++    +++  +                       F GD     H  Q T  +++  +C+LA+AVNLCSFGLIGRTS +T+QVVGHAKT L+LT G++ +     D+ +++ N+ G+++A++GV+ Y +++
Sbjct:  151 GVLAVLSTAVFQIWQGTKQKEFGISATQLQAGIAPWQSIQAAAVSIATECYCYEPSPSGAPCDTAVRFFELAFAGD-----HVKQHTLWIVLG-TCILALAVNLCSFGLIGRTSPITFQVVGHAKTCLVLTGGYVFFSSGAGDTQQIINNIAGVSVAMIGVLLYGHIQ 312          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A7S2W115_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W115_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.110e-26
Identity = 69/157 (43.95%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDFRGDAPITMHAFQTTEC---------MLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKVNA 444
            G  AV  T+Q+QIWQG KQ+  GL+  Q   +++  Q  +   LA+V +  GD    MH+   T            LIALSC+LA++VN+ SF LIG+TSAVT+QVVGH KT LIL+ G+ ++  A+     + +N+ G+ IALVGV  YS LK+N+
Sbjct:  170 GVAAVVVTAQYQIWQGKKQKESGLSSSQLACSVSLFQIFVGFFLAVVFE-AGDL---MHSEDNTANKQPGRLSLNQLIALSCILAVSVNVHSFALIGKTSAVTFQVVGHGKTCLILSSGYAMHIMANKPFSDLYKNIFGVMIALVGVGLYSNLKLNS 322          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A7S0J2J5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2J5_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 6.430e-26
Identity = 69/159 (43.40%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAM--LTGVLAL---VVDFRGDAPITMHAF--------QTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKV 438
            G LAV  T+ FQ+WQG+KQR   L+  Q    +A  QA+  L   +AL    V F  D+     A         ++    L+AL+C +A+  N  SFGLIGRTSA+++QVVGHAKT L+L  GFLL+P   ADS +++ N++G++ ALVG I Y +LK+
Sbjct:   79 GVLAVLSTTIFQLWQGSKQREFELSATQLQAAVAFWQAVQSLCACIALENLCVQFPADSSSCSTAIGFFNSADRRSGTLWLVALTCFIALGTNFSSFGLIGRTSAISFQVVGHAKTCLVLAGGFLLWP--LADSRQLMHNVVGVSTALVGCILYGHLKM 235          
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Match: A0A7S0L6F9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L6F9_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 6.870e-26
Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLA---PKQAMLTGVL--ALVVD-----------FRGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGHAKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKVNAA 447
            G LAV  T+ FQIWQG KQ+ +G++  Q  +++A     QAM+  VL  ++ V+           F   A     + +     L+  +C LA+AVN CSFGLIGRTS +T+QVVGHAKT L+L  GF+L+P    D  +   N+ G+++A++GVI Y +++  A+
Sbjct:  169 GMLAVLTTAMFQIWQGRKQQEYGVSGTQLQNSVAFWQTTQAMIGAVLFESVCVESPPVACDSALAFLQKAVSLPDSVEKQAMWLVLATCFLALAVNWCSFGLIGRTSPITFQVVGHAKTCLVLIGGFVLFPTKAGDLQQFYNNIAGVSVAMIGVILYGHVQQAAS 333          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106760.1447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0MBN6_9CRYP3.490e-3443.84Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
L1K117_GUITC6.140e-3443.45TPT domain-containing protein n=1 Tax=Guillardia t... [more]
A0A7S0F3C2_9CRYP3.260e-3342.76Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A0L0D9T2_THETB6.640e-3345.64Drug/Metabolite transporter superfamily protein n=... [more]
A0A0L0D5Z1_THETB5.620e-3043.92Drug/Metabolite transporter superfamily protein (F... [more]
A0A1J4KDF1_9EUKA6.650e-2837.82Integral membrane protein n=1 Tax=Tritrichomonas f... [more]
A0A0M0J6F9_9EUKA5.640e-2736.31Drug metabolite transporter superfamily n=1 Tax=Ch... [more]
A0A7S2W115_9STRA2.110e-2643.95Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0J2J5_9EUKA6.430e-2643.40Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0L6F9_9EUKA6.870e-2639.39Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106760contigM-pyrifera_M_contig106760:1..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue3.8e-27
Seed eggNOG ortholog55529.EKX54073
KEGG koko:K11665,ko:K14301,ko:K15285
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC3.6.4.12
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.2891874-CDS-M-pyrifera_M_contig106760:0..5521622815577.2891874-CDS-M-pyrifera_M_contig106760:0..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106760 1..552 +
1692277471.7282796-CDS-M-pyrifera_M_contig106760:0..5521692277471.7282796-CDS-M-pyrifera_M_contig106760:0..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106760 1..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106760.1447.1prot_M-pyrifera_M_contig106760.1447.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106760 1..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106760.1447.1

>prot_M-pyrifera_M_contig106760.1447.1 ID=prot_M-pyrifera_M_contig106760.1447.1|Name=mRNA_M-pyrifera_M_contig106760.1447.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
GALAVACTSQFQIWQGAKQRAHGLNPLQTIHTLAPKQAMLTGVLALVVDF
RGDAPITMHAFQTTECMLIALSCMLAIAVNLCSFGLIGRTSAVTYQVVGH
AKTILILTLGFLLYPPAHADSGKMVRNLIGIAIALVGVISYSYLKVNAAA
AATTSSPKSRGTHEHVQLRTTEDDDMDEEDGELG
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mRNA from alignment at M-pyrifera_M_contig106760:1..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106760.1447.1 ID=mRNA_M-pyrifera_M_contig106760.1447.1|Name=mRNA_M-pyrifera_M_contig106760.1447.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig106760:1..552+ (Macrocystis pyrifera P11B4 male)
GGCGCGCTGGCCGTCGCCTGCACCTCCCAGTTCCAGATCTGGCAGGGCGC CAAGCAGCGCGCGCACGGGCTGAACCCGCTGCAGACCATCCACACGCTCG CGCCCAAGCAGGCCATGCTCACCGGCGTGCTGGCGCTCGTCGTCGACTTC CGCGGCGACGCGCCCATCACCATGCACGCGTTCCAGACCACCGAGTGCAT GCTCATCGCCCTCTCCTGCATGCTGGCCATCGCAGTCAACCTCTGCTCCT TCGGCCTCATCGGCCGCACCTCCGCTGTCACCTACCAGGTCGTCGGCCAC GCCAAAACCATCCTCATCCTCACCCTCGGGTTCCTGCTCTACCCGCCCGC CCACGCCGACTCGGGCAAAATGGTGCGCAACCTGATCGGCATCGCCATCG CCCTCGTCGGCGTCATCTCCTACTCCTACCTCAAGGTCAACGCCGCCGCC GCCGCCACCACCTCCTCGCCCAAGTCGCGTGGCACGCACGAGCACGTGCA GCTGCGCACCACCGAAGACGACGACATGGACGAGGAGGACGGTGAACTCG GC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106760:1..552+

>mRNA_M-pyrifera_M_contig106760.1447.1 ID=mRNA_M-pyrifera_M_contig106760.1447.1|Name=mRNA_M-pyrifera_M_contig106760.1447.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig106760:1..552+ (Macrocystis pyrifera P11B4 male)
GGCGCGCTGGCCGTCGCCTGCACCTCCCAGTTCCAGATCTGGCAGGGCGC
CAAGCAGCGCGCGCACGGGCTGAACCCGCTGCAGACCATCCACACGCTCG
CGCCCAAGCAGGCCATGCTCACCGGCGTGCTGGCGCTCGTCGTCGACTTC
CGCGGCGACGCGCCCATCACCATGCACGCGTTCCAGACCACCGAGTGCAT
GCTCATCGCCCTCTCCTGCATGCTGGCCATCGCAGTCAACCTCTGCTCCT
TCGGCCTCATCGGCCGCACCTCCGCTGTCACCTACCAGGTCGTCGGCCAC
GCCAAAACCATCCTCATCCTCACCCTCGGGTTCCTGCTCTACCCGCCCGC
CCACGCCGACTCGGGCAAAATGGTGCGCAACCTGATCGGCATCGCCATCG
CCCTCGTCGGCGTCATCTCCTACTCCTACCTCAAGGTCAACGCCGCCGCC
GCCGCCACCACCTCCTCGCCCAAGTCGCGTGGCACGCACGAGCACGTGCA
GCTGCGCACCACCGAAGACGACGACATGGACGAGGAGGACGGTGAACTCG
GCGGCGCGCTGGCCGTCGCCTGCACCTCCCAGTTCCAGATCTGGCAGGGC
GCCAAGCAGCGCGCGCACGGGCTGAACCCGCTGCAGACCATCCACACGCT
CGCGCCCAAGCAGGCCATGCTCACCGGCGTGCTGGCGCTCGTCGTCGACT
TCCGCGGCGACGCGCCCATCACCATGCACGCGTTCCAGACCACCGAGTGC
ATGCTCATCGCCCTCTCCTGCATGCTGGCCATCGCAGTCAACCTCTGCTC
CTTCGGCCTCATCGGCCGCACCTCCGCTGTCACCTACCAGGTCGTCGGCC
ACGCCAAAACCATCCTCATCCTCACCCTCGGGTTCCTGCTCTACCCGCCC
GCCCACGCCGACTCGGGCAAAATGGTGCGCAACCTGATCGGCATCGCCAT
CGCCCTCGTCGGCGTCATCTCCTACTCCTACCTCAAGGTCAACGCCGCCG
CCGCCGCCACCACCTCCTCGCCCAAGTCGCGTGGCACGCACGAGCACGTG
CAGCTGCGCACCACCGAAGACGACGACATGGACGAGGAGGACGGTGAACT
CGGC
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