mRNA_M-pyrifera_M_contig106022.1297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106022.1297.1
Unique NamemRNA_M-pyrifera_M_contig106022.1297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: G1KPI7_ANOCA (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Episquamata TaxID=1329912 RepID=G1KPI7_ANOCA)

HSP 1 Score: 110 bits (275), Expect = 5.280e-26
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE A TK          K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  379 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKVQQELETARTKCPALIPTSQRKLIKQVLNVVNTIFHGQLLSQVTCLACDNKSNTIEPF 491
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A670IWT4_PODMU (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Episquamata TaxID=1329912 RepID=A0A670IWT4_PODMU)

HSP 1 Score: 110 bits (275), Expect = 5.280e-26
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE A TK          K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  379 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKVQQELETARTKCPALIPTSQRKLIKQVLNVVNTIFHGQLLSQVTCLACDNKSNTIEPF 491
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: H9FIG7_MACMU (Ubiquitin carboxyl-terminal hydrolase 49 (Fragment) n=1 Tax=Macaca mulatta TaxID=9544 RepID=H9FIG7_MACMU)

HSP 1 Score: 102 bits (255), Expect = 5.640e-26
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHT-----------KLHKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LFRVMWSGKW +V+P A+L ++W   P+FR Y+QQDA EFLC LL +++ ELE   T           KL K   +   +V ++F G L S VTC  C+ KS T + F
Sbjct:   12 SLCRELHTLFRVMWSGKWALVSPFAMLHSVWSLIPAFRGYDQQDAQEFLCELLHKVQQELEPEGTTRRILIPFSQRKLTK---QVLKVVNTIFHGQLLSQVTCISCNYKSNTIEPF 124
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A060WWP1_ONCMY (USP domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060WWP1_ONCMY)

HSP 1 Score: 107 bits (268), Expect = 6.530e-26
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKLHKGGF---------RATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE   T     G          +  +IV ++F G L S VTC  CD +S T + F
Sbjct:  182 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWQLIPAFRGYAQQDAQEFLCELLDKVQHELESTGTHTPPAGVSTGQRHLIKQVLSIVNTIFHGQLLSQVTCLACDHRSNTVEPF 295
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A7K6I2U1_9PASS (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Meliphagoidea TaxID=1931080 RepID=A0A7K6I2U1_9PASS)

HSP 1 Score: 110 bits (274), Expect = 7.120e-26
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKLH--------KGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LFRVMWSGKW +V+P A+L ++W   P+FR Y+QQDA EFLC LLD+++ ELE   TK          K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  352 SLCHELHTLFRVMWSGKWALVSPFAMLHSVWSLIPAFRGYDQQDAQEFLCELLDKVQQELESEGTKRRILIPFSQRKLTKQVLKVVNTIFHGQLLSQVTCRTCDYKSNTVEPF 464
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A7J8G2T3_MOLMO (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Microchiroptera TaxID=30560 RepID=A0A7J8G2T3_MOLMO)

HSP 1 Score: 109 bits (272), Expect = 1.340e-25
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LFRVMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE   T L         K   +   +V ++F G L S VTC  CD+KS T + F
Sbjct:  378 SLCHELHTLFRVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQHELETTGTMLPALIPSSQRKLIKQVLNVVNNIFHGQLLSQVTCLACDKKSNTIEPF 490
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: F6QXL3_HORSE (Ubiquitin carboxyl-terminal hydrolase n=9 Tax=Eutheria TaxID=9347 RepID=F6QXL3_HORSE)

HSP 1 Score: 108 bits (271), Expect = 1.840e-25
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE   T L         K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  380 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKIQHELETTGTSLPALIPTSQRKAIKQVLNVVNNIFHGQLLSQVTCLACDNKSNTIEPF 492
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A8D0HD44_SPHPU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0HD44_SPHPU)

HSP 1 Score: 108 bits (271), Expect = 1.840e-25
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE A T+          K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  382 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKVQQELETAGTRYPALVPPTQRKLIKQVLNVVNTIFHGQLLSQVTCLACDNKSNTVEPF 494
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: UPI001F07DE84 (ubiquitin carboxyl-terminal hydrolase 44 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07DE84)

HSP 1 Score: 108 bits (271), Expect = 1.850e-25
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKLHKGGF------RATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE   T     G       +  ++V ++F G L S VTC  CD +S T + F
Sbjct:  422 SLCHELHTLFQVMWSGKWALVSPFAMLHSVWQLIPAFRGYAQQDAQEFLCELLDKVQRELESTGTHTPAAGTHRRLIKQVLSVVNTIFHGQLLSQVTCLACDHRSNTVESF 532
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BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Match: A0A834EMC8_9CHIR (Ubiquitinyl hydrolase 1 n=2 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834EMC8_9CHIR)

HSP 1 Score: 108 bits (270), Expect = 1.910e-25
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLCYLLDRMKMELEKAHTKL--------HKGGFRATTIVESVFAGTLRSVVTCHGCDRKSTTEQDF 315
            S+C ELH LF+VMWSGKW +V+P A+L ++W+  P+FR Y QQDA EFLC LLD+++ ELE   T+L         K   +   +V ++F G L S VTC  CD KS T + F
Sbjct:  377 SLCHELHTLFQVMWSGKWTLVSPFAMLHSVWRLIPAFRGYAQQDAQEFLCELLDKVQHELETTGTRLLALIPTSQRKLIKQVLNVVNNIFHGRLLSQVTCLACDNKSNTIESF 489
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106022.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G1KPI7_ANOCA5.280e-2648.67Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Epis... [more]
A0A670IWT4_PODMU5.280e-2648.67Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Epis... [more]
H9FIG7_MACMU5.640e-2646.55Ubiquitin carboxyl-terminal hydrolase 49 (Fragment... [more]
A0A060WWP1_ONCMY6.530e-2646.49USP domain-containing protein n=1 Tax=Oncorhynchus... [more]
A0A7K6I2U1_9PASS7.120e-2648.67Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A7J8G2T3_MOLMO1.340e-2548.67Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Micr... [more]
F6QXL3_HORSE1.840e-2547.79Ubiquitin carboxyl-terminal hydrolase n=9 Tax=Euth... [more]
A0A8D0HD44_SPHPU1.840e-2547.79Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Sphe... [more]
UPI001F07DE841.850e-2546.85ubiquitin carboxyl-terminal hydrolase 44 n=1 Tax=H... [more]
A0A834EMC8_9CHIR1.910e-2547.79Ubiquitinyl hydrolase 1 n=2 Tax=Phyllostomus disco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106022contigM-pyrifera_M_contig106022:162..476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score112.1
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog28377.ENSACAP00000013876
Preferred nameUSP44
KEGG koko:K11834
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007059,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009892,GO:0009987,GO:0010498,GO:0010564,GO:0010605,GO:0010965,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0030071,GO:0030163,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0036459,GO:0043086,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051603,GO:0051726,GO:0051783,GO:0051983,GO:0060255,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0090231,GO:0090266,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901976,GO:1901987,GO:1901990,GO:1902099,GO:1903320,GO:1903321,GO:1903504,GO:1904666,GO:1904667,GO:1904888,GO:1905818
EggNOG free text desc.Ubiquitin specific peptidase 44
EggNOG OGs39R6F@33154,3BEFT@33208,3CSZG@33213,488PV@7711,494YF@7742,KOG1867@1,KOG1867@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.8372602-CDS-M-pyrifera_M_contig106022:161..4761622815569.8372602-CDS-M-pyrifera_M_contig106022:161..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106022 162..476 -
1692277468.3525422-CDS-M-pyrifera_M_contig106022:161..4761692277468.3525422-CDS-M-pyrifera_M_contig106022:161..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106022 162..476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106022.1297.1prot_M-pyrifera_M_contig106022.1297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106022 162..476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106022.1297.1

>prot_M-pyrifera_M_contig106022.1297.1 ID=prot_M-pyrifera_M_contig106022.1297.1|Name=mRNA_M-pyrifera_M_contig106022.1297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
SICVELHKLFRVMWSGKWKVVTPHALLAALWKFAPSFRNYEQQDAGEFLC
YLLDRMKMELEKAHTKLHKGGFRATTIVESVFAGTLRSVVTCHGCDRKST
TEQDF
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mRNA from alignment at M-pyrifera_M_contig106022:162..476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106022.1297.1 ID=mRNA_M-pyrifera_M_contig106022.1297.1|Name=mRNA_M-pyrifera_M_contig106022.1297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig106022:162..476- (Macrocystis pyrifera P11B4 male)
TCCATCTGCGTGGAGCTTCACAAGCTGTTCCGCGTGATGTGGAGTGGCAA
GTGGAAGGTGGTCACTCCCCACGCGCTGTTGGCTGCGCTGTGGAAGTTCG
CTCCAAGCTTCAGGAATTACGAGCAACAGGACGCTGGGGAGTTCCTCTGC
TACCTTCTGGATCGGATGAAGATGGAGTTGGAGAAAGCACACACGAAGCT
ACACAAAGGGGGCTTCAGGGCAACAACCATTGTCGAGTCTGTATTTGCAG
GGACCCTCAGGAGTGTTGTGACATGCCACGGCTGCGACAGAAAGTCCACG
ACAGAGCAGGACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106022:162..476-

>mRNA_M-pyrifera_M_contig106022.1297.1 ID=mRNA_M-pyrifera_M_contig106022.1297.1|Name=mRNA_M-pyrifera_M_contig106022.1297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig106022:162..476- (Macrocystis pyrifera P11B4 male)
TCCATCTGCGTGGAGCTTCACAAGCTGTTCCGCGTGATGTGGAGTGGCAA
GTGGAAGGTGGTCACTCCCCACGCGCTGTTGGCTGCGCTGTGGAAGTTCG
CTCCAAGCTTCAGGAATTACGAGCAACAGGACGCTGGGGAGTTCCTCTGC
TACCTTCTGGATCGGATGAAGATGGAGTTGGAGAAAGCACACACGAAGCT
ACACAAAGGGGGCTTCAGGGCAACAACCATTGTCGAGTCTGTATTTGCAG
GGACCCTCAGGAGTGTTGTGACATGCCACGGCTGCGACAGAAAGTCCACG
ACAGAGCAGGACTTCTCCATCTGCGTGGAGCTTCACAAGCTGTTCCGCGT
GATGTGGAGTGGCAAGTGGAAGGTGGTCACTCCCCACGCGCTGTTGGCTG
CGCTGTGGAAGTTCGCTCCAAGCTTCAGGAATTACGAGCAACAGGACGCT
GGGGAGTTCCTCTGCTACCTTCTGGATCGGATGAAGATGGAGTTGGAGAA
AGCACACACGAAGCTACACAAAGGGGGCTTCAGGGCAACAACCATTGTCG
AGTCTGTATTTGCAGGGACCCTCAGGAGTGTTGTGACATGCCACGGCTGC
GACAGAAAGTCCACGACAGAGCAGGACTTC
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