prot_M-pyrifera_M_contig10595.1277.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10595.1277.1
Unique Nameprot_M-pyrifera_M_contig10595.1277.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length206
Homology
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.720e-78
Identity = 139/208 (66.83%), Postives = 170/208 (81.73%), Query Frame = 0
Query:    1 TAAAAQSRIIRLPASVHDFLNSVRKYTIELTVDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDGLSP--EDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 206
            T  A QSR+IRLP  VH FL+S+RKYT ELTVDG++PTD+ELGDKLGATVEKIQ+YR+AA+ TDS+SLD R    S K  D +  +LG  +G+  +P  ED +Q  YMKGKV ALL TL DRE++VVR+RYGLDG   KTLE+IGRD+GLTRERVRQIE KAL KLRQPYRNYR+R+H + Q+FVDAG+R+PASEA++AA+ALIA+AE
Sbjct:  378 TGIANQSRVIRLPTQVHAFLSSIRKYTYELTVDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRA---SNKVSDGAADDLGTQIGEKSTPNPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAE 582          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 8.510e-49
Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 0
Query:    6 QSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDA-RVGAGSGKSGDNSDSNLGDMV-GDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 206
            QSRIIRLP  VHDFLN VRK T+E+T  +GKLPTD+EL + L  +  +IQYYR AA +T  LS++A R  A    +       +G  V G   +P+  +Q+  MK KV  LL TL  RE+ VV++R+GL G  P+TLE++GRD  LTRERVRQIE +ALHKLRQPYRNYR+RD  L+Q+ V AGV  P   AI AA+  +A+AE
Sbjct:  324 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQAT--LSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 525          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 9.830e-49
Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 0
Query:    6 QSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS-GDNSDSNLGDMVGDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 206
            QSRIIRLP  VHDFLN VRK T+E+T  +GKLPTD EL + L  +  +IQYYR AA +T S+     + + +  S G   +   G + G   +P+  +Q+  MK KV  LL TL  RE+ VV++R+GL G  P+TLE++GRD  LTRERVRQIE +ALHKLRQPYRNYR+RD  L+Q+ V AGV  P   AI AA+  +A+AE
Sbjct:  194 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQG-VSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 395          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.960e-36
Identity = 90/184 (48.91%), Postives = 120/184 (65.22%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSL----SLDARVGAGSGKSGDNSDSNLGDMVGDGLS-PEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLE 179
            A A QSR IRLP  VHDFLNSV++ T EL+++ G+ PTD+EL  +L  T +KI +YR AA S  S+    +  +R G+G+ + G  SD  L D + D    PED +Q   +K  +  LL TL  RE+ VVR R+GLD    +TLE+IG+   +TRERVRQIE +AL KLRQPYRN++LR +  E
Sbjct:  156 AIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGG-KSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.090e-35
Identity = 85/178 (47.75%), Postives = 114/178 (64.04%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS------GDNSDSNLGDMVGD-GLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNY 171
            A A QSR IRLP  VHD LN VR+ T EL+ + G+ PTD+E+ +K   TV+K+ + R+A   T S+     +GAG G S      G N D  +GD++ D G +P D +    +K  V+ +L TL  RE+ V+R R+GLD    KTLE+IGR   +TRER+RQIE +ALHKLRQPYRN+
Sbjct:  229 AIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQN-DKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNH 405          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.240e-34
Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSL---DARVGAGSGKSGDNSDSNLGDMVGDGLS-PEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLE 179
            A A QSR IRLP  VHD LNS+++ T EL+++ G+ PTD+EL  +L    +KI++YR AA S  S+     +AR G+ +   G  SD  L D + D    PED +Q + +K  ++ LL TL  RE+ VVR R+GLD    +TLE+IG+   +TRERVRQIE +AL KLRQPYRN++LR +  E
Sbjct:  197 AIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGG-KSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.540e-33
Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS---GDNSDSNLGDMV-GDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDH 176
            A A QSR IRLP  +HD LN+++K T EL V  G+ PT++EL +++   +EK+++ +    S  ++S+DA+  A + KS   G   +  LGD +  DG  P   ++   +K  +  L+ TL  RE+ V+R R+GLD   PKTLE+IG    +TRERVRQIE +ALHKLRQPYRN++LR++
Sbjct:  299 AIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQEC--SRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: R5TCT1_9CLOT (RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:762 TaxID=1262837 RepID=R5TCT1_9CLOT)

HSP 1 Score: 125 bits (314), Expect = 6.280e-31
Identity = 74/177 (41.81%), Postives = 117/177 (66.10%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDG--LSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRD 175
            A A Q+R IR+P  + + +N + +Y  +LT++  + PTD+EL  K+  +VEK++   +  I+ + +SL+  +G       +  DS+LGD V D   +SPED++    +K ++A LL TL +RE++V+R R+GLD   PKTLE++G+  G+TRER+RQIE KAL KLR P R+ +L+D
Sbjct:  198 AIADQARTIRVPVHMVETINKLSRYQRQLTLELNREPTDEELAKKMNMSVEKVREIIK--IAQEPVSLETPIG-------EEDDSHLGDFVPDANNMSPEDYTTHEMLKDEIADLLLTLTEREEQVLRLRFGLDNGSPKTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSRKLKD 365          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO)

HSP 1 Score: 124 bits (310), Expect = 9.320e-31
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDGLSPEDF---------SQTTY--MKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNY 171
            A A   R+IRLP  +HD +N+VRK   E+TV+ G+ PT +E+ +K   T+EKI++  R  ++ +S+S++  V +   K    S + LG   G GLS ED           Q TY  +K  ++ L+ TL+ RE+ V+R R+GLD    KTL++IGR   +TRER+RQIE +ALHKLRQPYRN+
Sbjct:  135 AIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNR--VTQESISINEEVRSSKTKG---SSAGLG---GTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNH 308          
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7X7BIB5_9FIRM (RNA polymerase sigma factor SigA n=2 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7BIB5_9FIRM)

HSP 1 Score: 124 bits (312), Expect = 2.820e-30
Identity = 73/177 (41.24%), Postives = 116/177 (65.54%), Query Frame = 0
Query:    2 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGD--GLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRD 175
            A A Q+R IR+P  + + +N + +Y  +LT + G+ PT +E+  ++  T +K++   +  IS + +SL++ VG       +  DSNLGD + D   LSP++F+    +K ++  +LETL DRE+RV+R R+GLD    +TLE++G++ G+TRER+RQIE KAL KLR P R+ +LRD
Sbjct:  252 AIADQARTIRIPVHMVETINKLVRYQRQLTQELGREPTPEEIAARMDTTPDKVREILK--ISQEPISLESPVG-------EEDDSNLGDFIADEDALSPDEFASNELLKRELNEVLETLTDREERVLRLRFGLDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLRD 419          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA31_9PHAE1.720e-7866.83RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
A0A6H5K3H4_9PHAE8.510e-4953.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI9.830e-4952.22Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
A0A835ZBY3_9STRA7.960e-3648.91RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2KJI8_9STRA1.090e-3547.75Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835ZES3_9STRA2.240e-3447.54RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2WX55_9STRA3.540e-3344.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
R5TCT1_9CLOT6.280e-3141.81RNA polymerase sigma factor SigA n=1 Tax=Clostridi... [more]
A0A1Z5JFS9_FISSO9.320e-3143.41RNA polymerase primary sigma factor n=1 Tax=Fistul... [more]
A0A7X7BIB5_9FIRM2.820e-3041.24RNA polymerase sigma factor SigA n=2 Tax=Bacilli b... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 138..153
score: 55.0
coord: 117..129
score: 44.07
coord: 153..164
score: 64.3
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 138..164
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 63..166
e-value: 4.3E-12
score: 43.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 12..94
e-value: 4.2E-10
score: 42.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 95..177
e-value: 1.7E-26
score: 93.8
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 113..166
e-value: 1.2E-17
score: 63.2
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 3..175
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 3..175
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 12..93
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 79..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10595contigM-pyrifera_M_contig10595:475..1984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10595.1277.1mRNA_M-pyrifera_M_contig10595.1277.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10595 475..1984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10595.1277.1 ID=prot_M-pyrifera_M_contig10595.1277.1|Name=mRNA_M-pyrifera_M_contig10595.1277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
TAAAAQSRIIRLPASVHDFLNSVRKYTIELTVDGKLPTDQELGDKLGATV
EKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDGLSPEDF
SQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTR
ERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKA
LIAKAE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR036388WH-like_DNA-bd_sf
IPR007630RNA_pol_sigma70_r4
IPR013324RNA_pol_sigma_r3/r4-like