mRNA_M-pyrifera_M_contig10595.1277.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 260 bits (664), Expect = 1.720e-78 Identity = 139/208 (66.83%), Postives = 170/208 (81.73%), Query Frame = 1
Query: 1 TAAAAQSRIIRLPASVHDFLNSVRKYTIELTVDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDGLSP--EDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 618
T A QSR+IRLP VH FL+S+RKYT ELTVDG++PTD+ELGDKLGATVEKIQ+YR+AA+ TDS+SLD R S K D + +LG +G+ +P ED +Q YMKGKV ALL TL DRE++VVR+RYGLDG KTLE+IGRD+GLTRERVRQIE KAL KLRQPYRNYR+R+H + Q+FVDAG+R+PASEA++AA+ALIA+AE
Sbjct: 378 TGIANQSRVIRLPTQVHAFLSSIRKYTYELTVDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRA---SNKVSDGAADDLGTQIGEKSTPNPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAE 582
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE) HSP 1 Score: 179 bits (454), Expect = 8.510e-49 Identity = 109/204 (53.43%), Postives = 139/204 (68.14%), Query Frame = 1
Query: 16 QSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDA-RVGAGSGKSGDNSDSNLGDMV-GDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 618
QSRIIRLP VHDFLN VRK T+E+T +GKLPTD+EL + L + +IQYYR AA +T LS++A R A + +G V G +P+ +Q+ MK KV LL TL RE+ VV++R+GL G P+TLE++GRD LTRERVRQIE +ALHKLRQPYRNYR+RD L+Q+ V AGV P AI AA+ +A+AE
Sbjct: 324 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQAT--LSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 525
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI) HSP 1 Score: 178 bits (451), Expect = 9.830e-49 Identity = 106/203 (52.22%), Postives = 137/203 (67.49%), Query Frame = 1
Query: 16 QSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS-GDNSDSNLGDMVGDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLEQLFVDAGVRQPASEAISAAKALIAKAE 618
QSRIIRLP VHDFLN VRK T+E+T +GKLPTD EL + L + +IQYYR AA +T S+ + + + S G + G + G +P+ +Q+ MK KV LL TL RE+ VV++R+GL G P+TLE++GRD LTRERVRQIE +ALHKLRQPYRNYR+RD L+Q+ V AGV P AI AA+ +A+AE
Sbjct: 194 QSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQG-VSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 395
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA) HSP 1 Score: 137 bits (346), Expect = 7.960e-36 Identity = 90/184 (48.91%), Postives = 120/184 (65.22%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSL----SLDARVGAGSGKSGDNSDSNLGDMVGDGLS-PEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLE 537
A A QSR IRLP VHDFLNSV++ T EL+++ G+ PTD+EL +L T +KI +YR AA S S+ + +R G+G+ + G SD L D + D PED +Q +K + LL TL RE+ VVR R+GLD +TLE+IG+ +TRERVRQIE +AL KLRQPYRN++LR + E
Sbjct: 156 AIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGG-KSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.090e-35 Identity = 85/178 (47.75%), Postives = 114/178 (64.04%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELT-VDGKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS------GDNSDSNLGDMVGD-GLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNY 513
A A QSR IRLP VHD LN VR+ T EL+ + G+ PTD+E+ +K TV+K+ + R+A T S+ +GAG G S G N D +GD++ D G +P D + +K V+ +L TL RE+ V+R R+GLD KTLE+IGR +TRER+RQIE +ALHKLRQPYRN+
Sbjct: 229 AIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGGGSMGQN-DKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNH 405
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.240e-34 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSL---DARVGAGSGKSGDNSDSNLGDMVGDGLS-PEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDHGLE 537
A A QSR IRLP VHD LNS+++ T EL+++ G+ PTD+EL +L +KI++YR AA S S+ +AR G+ + G SD L D + D PED +Q + +K ++ LL TL RE+ VVR R+GLD +TLE+IG+ +TRERVRQIE +AL KLRQPYRN++LR + E
Sbjct: 197 AIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGG-KSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 133 bits (335), Expect = 3.540e-33 Identity = 80/180 (44.44%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKS---GDNSDSNLGDMV-GDGLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRDH 528
A A QSR IRLP +HD LN+++K T EL V G+ PT++EL +++ +EK+++ + S ++S+DA+ A + KS G + LGD + DG P ++ +K + L+ TL RE+ V+R R+GLD PKTLE+IG +TRERVRQIE +ALHKLRQPYRN++LR++
Sbjct: 299 AIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQEC--SRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: R5TCT1_9CLOT (RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:762 TaxID=1262837 RepID=R5TCT1_9CLOT) HSP 1 Score: 125 bits (314), Expect = 6.280e-31 Identity = 74/177 (41.81%), Postives = 117/177 (66.10%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDG--LSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRD 525
A A Q+R IR+P + + +N + +Y +LT++ + PTD+EL K+ +VEK++ + I+ + +SL+ +G + DS+LGD V D +SPED++ +K ++A LL TL +RE++V+R R+GLD PKTLE++G+ G+TRER+RQIE KAL KLR P R+ +L+D
Sbjct: 198 AIADQARTIRVPVHMVETINKLSRYQRQLTLELNREPTDEELAKKMNMSVEKVREIIK--IAQEPVSLETPIG-------EEDDSHLGDFVPDANNMSPEDYTTHEMLKDEIADLLLTLTEREEQVLRLRFGLDNGSPKTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSRKLKD 365
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A1Z5JFS9_FISSO (RNA polymerase primary sigma factor n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFS9_FISSO) HSP 1 Score: 124 bits (310), Expect = 9.320e-31 Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGDGLSPEDF---------SQTTY--MKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNY 513
A A R+IRLP +HD +N+VRK E+TV+ G+ PT +E+ +K T+EKI++ R ++ +S+S++ V + K S + LG G GLS ED Q TY +K ++ L+ TL+ RE+ V+R R+GLD KTL++IGR +TRER+RQIE +ALHKLRQPYRN+
Sbjct: 135 AIADHGRMIRLPVHIHDQMNAVRKLEREMTVELGRAPTPKEVAEKSNLTLEKIEFLNR--VTQESISINEEVRSSKTKG---SSAGLG---GTGLSLEDIMGDPESQPVEQATYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKCKTLDEIGRKFSVTRERIRQIEARALHKLRQPYRNH 308
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Match: A0A7X7BIB5_9FIRM (RNA polymerase sigma factor SigA n=2 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7BIB5_9FIRM) HSP 1 Score: 124 bits (312), Expect = 2.820e-30 Identity = 73/177 (41.24%), Postives = 116/177 (65.54%), Query Frame = 1
Query: 4 AAAAQSRIIRLPASVHDFLNSVRKYTIELTVD-GKLPTDQELGDKLGATVEKIQYYRRAAISTDSLSLDARVGAGSGKSGDNSDSNLGDMVGD--GLSPEDFSQTTYMKGKVAALLETLDDREKRVVRSRYGLDGLDPKTLEQIGRDVGLTRERVRQIEVKALHKLRQPYRNYRLRD 525
A A Q+R IR+P + + +N + +Y +LT + G+ PT +E+ ++ T +K++ + IS + +SL++ VG + DSNLGD + D LSP++F+ +K ++ +LETL DRE+RV+R R+GLD +TLE++G++ G+TRER+RQIE KAL KLR P R+ +LRD
Sbjct: 252 AIADQARTIRIPVHMVETINKLVRYQRQLTQELGREPTPEEIAARMDTTPDKVREILK--ISQEPISLESPVG-------EEDDSNLGDFIADEDALSPDEFASNELLKRELNEVLETLTDREERVLRLRFGLDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLRD 419 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10595.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10595.1277.1 >prot_M-pyrifera_M_contig10595.1277.1 ID=prot_M-pyrifera_M_contig10595.1277.1|Name=mRNA_M-pyrifera_M_contig10595.1277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp TAAAAQSRIIRLPASVHDFLNSVRKYTIELTVDGKLPTDQELGDKLGATVback to top mRNA from alignment at M-pyrifera_M_contig10595:475..1984+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10595.1277.1 ID=mRNA_M-pyrifera_M_contig10595.1277.1|Name=mRNA_M-pyrifera_M_contig10595.1277.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1510bp|location=Sequence derived from alignment at M-pyrifera_M_contig10595:475..1984+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10595:475..1984+ >mRNA_M-pyrifera_M_contig10595.1277.1 ID=mRNA_M-pyrifera_M_contig10595.1277.1|Name=mRNA_M-pyrifera_M_contig10595.1277.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig10595:475..1984+ (Macrocystis pyrifera P11B4 male)back to top |