mRNA_M-pyrifera_M_contig105756.1230.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105756.1230.1
Unique NamemRNA_M-pyrifera_M_contig105756.1230.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A3D1G7F7_9BACT (TonB_dep_Rec domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G7F7_9BACT)

HSP 1 Score: 333 bits (853), Expect = 6.720e-111
Identity = 155/191 (81.15%), Postives = 169/191 (88.48%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            LS AGIGDLRF DVNGDG++NG+DRT IGS IPDFVYGF++ L++K FD+SI FQGQ GNEIFNGKNVVRPDPYNFE HVWDRWTGEGTSN+EPR SYGGYNFLPSDRFIHDGSYLRLRS IIGY LP  + TK+ L  ARFYLKA NL TFT+Y GYTPEIGS NVL+NGIDTG+YPIPRVISIGFNTTF
Sbjct:  263 LSQAGIGDLRFKDVNGDGVINGDDRTYIGSPIPDFVYGFSMDLNWKNFDMSIGFQGQIGNEIFNGKNVVRPDPYNFEAHVWDRWTGEGTSNSEPRPSYGGYNFLPSDRFIHDGSYLRLRSLIIGYRLPEKILTKMNLDNARFYLKANNLFTFTEYPGYTPEIGSNNVLANGIDTGIYPIPRVISIGFNTTF 453          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A3M8G6P5_9BACT (TonB-dependent receptor n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G6P5_9BACT)

HSP 1 Score: 330 bits (847), Expect = 4.130e-104
Identity = 151/191 (79.06%), Postives = 173/191 (90.58%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            LS A +GDLRFVDVNGDG+LNGEDRT IGS IPDFVYGFN+ L YK FD+SI  QGQ GNEIFNGKNVVRPDPYNFEQHVW+RWTGEGTSN+EPR +YGGYNFLPSDRFIHDGS+LRLR+ IIGY LP S Q++LGL++AR Y+KA NLLT T+YTGYTPEIGS++V++NGIDTG+YPIPRVIS+GFNT+F
Sbjct:  834 LSQADVGDLRFVDVNGDGVLNGEDRTFIGSPIPDFVYGFNLDLFYKNFDLSIGLQGQIGNEIFNGKNVVRPDPYNFEQHVWNRWTGEGTSNSEPRVTYGGYNFLPSDRFIHDGSFLRLRTVIIGYQLPPSYQSRLGLREARLYVKANNLLTITQYTGYTPEIGSQSVIANGIDTGIYPIPRVISVGFNTSF 1024          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A6I7QEV3_9BACT (TonB-dependent receptor (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7QEV3_9BACT)

HSP 1 Score: 307 bits (786), Expect = 6.040e-104
Identity = 140/191 (73.30%), Postives = 165/191 (86.39%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            +S AGIGDLRF+D NGDG +NG+DRT +GS IP FVYGF++ L+Y+ +D+S+  QGQYGN+IFNGKNVVRPDPYNFEQHVW+RWTGEGTS+TEPR SYGGYNFLPSDRFI DGSY+R+RS  IGYSLP  L ++L + +AR YLKATNL T T Y+GYTPEIGS +VLSNGIDTG+YPIPRV + GFNTTF
Sbjct:   37 MSQAGIGDLRFLDTNGDGQINGDDRTYLGSPIPKFVYGFSLDLNYRYWDLSLGIQGQYGNKIFNGKNVVRPDPYNFEQHVWNRWTGEGTSDTEPRPSYGGYNFLPSDRFIQDGSYVRIRSLNIGYSLPPGLTSRLNITRARIYLKATNLFTLTGYSGYTPEIGSGDVLSNGIDTGIYPIPRVFAAGFNTTF 227          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A521BW36_9BACT (TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521BW36_9BACT)

HSP 1 Score: 326 bits (836), Expect = 1.650e-102
Identity = 148/191 (77.49%), Postives = 170/191 (89.01%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            +S AG+GDLRF D+NGDG +NG+DRT IGS IPDFVYGF++ L+YK +D+S+  QGQYGNEIFNGKNVVRPDPYNFE HVWDRWTGEGTSN+EPR SYGGYN+LPSDRFI DGSYLRLRS +IGYSLPV+L  KLGL +AR Y+K TNL T+TKYTGYTPEIGS +VLSNGIDTG+YPIPRV+ +GFNTTF
Sbjct:  834 MSQAGVGDLRFKDINGDGEINGDDRTFIGSPIPDFVYGFSVDLNYKNWDMSVGLQGQYGNEIFNGKNVVRPDPYNFEAHVWDRWTGEGTSNSEPRPSYGGYNYLPSDRFIQDGSYLRLRSLVIGYSLPVNLTEKLGLSRARVYMKGTNLFTWTKYTGYTPEIGSGDVLSNGIDTGIYPIPRVVYLGFNTTF 1024          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A6C1P3T6_9BACT (TonB-dependent receptor n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P3T6_9BACT)

HSP 1 Score: 318 bits (815), Expect = 2.050e-99
Identity = 145/188 (77.13%), Postives = 166/188 (88.30%), Query Frame = 1
Query:   10 AGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            AG+GDLRFVD+NGDG++NG DRT +GS IP FVYGFN+ LDYK +D S  FQGQYGN+IFNGKN VRPDPYNFE HVWDRWTGEGTSNTEPR S+GGYNFLPSDRFIHDGS++RLR+ IIGYSLP S+   LG+ +AR Y+K  NLLT+TKYTGYTPEIGS +VLSNGID+GVYPIPRVI++GFNTTF
Sbjct:  843 AGVGDLRFVDMNGDGVINGLDRTYLGSPIPKFVYGFNLDLDYKNWDFSAGFQGQYGNKIFNGKNAVRPDPYNFEAHVWDRWTGEGTSNTEPRPSFGGYNFLPSDRFIHDGSFVRLRTLIIGYSLPGSMLANLGITRARVYIKGNNLLTWTKYTGYTPEIGSFDVLSNGIDSGVYPIPRVITLGFNTTF 1030          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: UPI001F1A9EA2 (TonB-dependent receptor n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F1A9EA2)

HSP 1 Score: 315 bits (806), Expect = 4.080e-98
Identity = 143/191 (74.87%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            LS+AG+GDLRFVD NGDG LNG+DRT IGS IPD VYGF++ L Y+ +D+S+ FQGQYGNE+FNGKN VRPDPYNFEQHVWDRWTGEGTSN+EPR SYGGYN+LPSDRFI DGSYLRLRS  +GYSLP  L   L + +AR Y+K  NL T+T YTGYTPEIGS NVLSNGIDTG+YPIPRV S+G NTTF
Sbjct:  839 LSNAGVGDLRFVDTNGDGTLNGDDRTFIGSPIPDLVYGFSVDLAYQNWDLSVAFQGQYGNELFNGKNAVRPDPYNFEQHVWDRWTGEGTSNSEPRPSYGGYNYLPSDRFIQDGSYLRLRSIALGYSLPTGLVNNLNMTRARIYVKGNNLFTWTSYTGYTPEIGSGNVLSNGIDTGIYPIPRVFSVGINTTF 1029          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A6I7NTN8_9BACT (TonB-dependent receptor n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7NTN8_9BACT)

HSP 1 Score: 311 bits (797), Expect = 8.230e-97
Identity = 143/191 (74.87%), Postives = 167/191 (87.43%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            +S AG+GDLRFVD N DG ++G+DRT +GS IP FVYGF+  LDYK +D+S+ FQGQ+GN+IFNGKNVVRPDPYNFEQHVW+RWTGEGTSN+EPR SYGGYNFLPSDRFIHDGSYLRLRS   GYSLP+SL  +L + QAR Y+KATNL T+T Y+GYTPEIGS +VLS+GIDTG+YPIPRV+SIG NTTF
Sbjct:  839 MSLAGVGDLRFVDTNNDGQISGDDRTYLGSPIPRFVYGFSFDLDYKNWDLSLGFQGQHGNKIFNGKNVVRPDPYNFEQHVWNRWTGEGTSNSEPRPSYGGYNFLPSDRFIHDGSYLRLRSLNFGYSLPLSLTGRLNMNQARIYVKATNLFTWTGYSGYTPEIGSGDVLSSGIDTGIYPIPRVVSIGVNTTF 1029          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A3B8VGM7_9BACT (TonB-dependent receptor n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3B8VGM7_9BACT)

HSP 1 Score: 305 bits (782), Expect = 1.170e-94
Identity = 139/191 (72.77%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            +S AGIGDL+F DVN DG++NG DRT +GS IPDFVYG N+  +++ +D+ I  QGQ GN+IFNGKNVVRPDPYNFE HVWDRWTGEGTSNTEPR S+GGYNFLPSDRFIHDGS+LRLR+  +GYSLP +  ++L +  ARFYLKA NL+TFTKYTGYTPEIGS +VLSNGID G YPIPRVI+ GFNTTF
Sbjct:  836 MSQAGIGDLKFKDVNEDGVINGLDRTYLGSPIPDFVYGVNLDFNWRNWDLGIGLQGQMGNKIFNGKNVVRPDPYNFEAHVWDRWTGEGTSNTEPRPSFGGYNFLPSDRFIHDGSFLRLRTLTLGYSLPSTFLSRLSIDNARFYLKANNLITFTKYTGYTPEIGSNDVLSNGIDYGTYPIPRVITFGFNTTF 1026          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A2E9UFK2_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E9UFK2_9BACT)

HSP 1 Score: 303 bits (776), Expect = 6.930e-94
Identity = 134/191 (70.16%), Postives = 162/191 (84.82%), Query Frame = 1
Query:    1 LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            LS AG+GDLRFVD+N DG++NG+DR+ IGS IPDF+YGF++SLDY+ FD+S+  QGQ GNEIFNGKNVVRPDPYNFE+HVW+RWTGEGTSN+EPR S+GGYN+LPSDRFIHDGSYLRL+  +IGY+LP  +  K+ L   R Y+KA N +T TKYTGYTPEIG  +VLSNGID G+YPIPR+ S G NT+F
Sbjct:  821 LSQAGVGDLRFVDINNDGVINGDDRSYIGSPIPDFIYGFSVSLDYRGFDLSLSIQGQTGNEIFNGKNVVRPDPYNFEKHVWNRWTGEGTSNSEPRPSFGGYNYLPSDRFIHDGSYLRLKDLVIGYTLPEKICQKINLDLFRVYIKANNFVTITKYTGYTPEIGGYDVLSNGIDRGIYPIPRIFSFGVNTSF 1011          
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Match: A0A1V5JG03_9BACT (TonB dependent receptor n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5JG03_9BACT)

HSP 1 Score: 285 bits (730), Expect = 3.230e-89
Identity = 134/190 (70.53%), Postives = 154/190 (81.05%), Query Frame = 1
Query:    4 SHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDVSIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGGYNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLLTFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF 573
            S AG+GDLRFVDV GDGIL+G DRT IGS IP F++GFN  ++YK  D+S+DFQGQ GN+IFNGK VVRPDPYNFE+HV+DRWTG GTSNTEPR S+GGYN+ PSDRFIHDGS+LRLRS  +GY+LP SL  K  ++Q R YLK TNL T TK+TGYTPEIGS +VLSNGID GVYPI    SIG N  F
Sbjct:  551 SQAGVGDLRFVDVTGDGILDGRDRTFIGSPIPKFIFGFNGMIEYKGMDLSVDFQGQTGNKIFNGKEVVRPDPYNFEKHVFDRWTGPGTSNTEPRPSFGGYNYTPSDRFIHDGSFLRLRSVTLGYTLPASLSQKAYIRQLRVYLKGTNLFTMTKFTGYTPEIGSYDVLSNGIDYGVYPITSAYSIGVNLLF 740          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105756.1230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1G7F7_9BACT6.720e-11181.15TonB_dep_Rec domain-containing protein n=1 Tax=Bal... [more]
A0A3M8G6P5_9BACT4.130e-10479.06TonB-dependent receptor n=1 Tax=Balneola sp. TaxID... [more]
A0A6I7QEV3_9BACT6.040e-10473.30TonB-dependent receptor (Fragment) n=1 Tax=Balneol... [more]
A0A521BW36_9BACT1.650e-10277.49TonB-linked outer membrane protein, SusC/RagA fami... [more]
A0A6C1P3T6_9BACT2.050e-9977.13TonB-dependent receptor n=1 Tax=Balneolaceae bacte... [more]
UPI001F1A9EA24.080e-9874.87TonB-dependent receptor n=1 Tax=Rhodohalobacter sp... [more]
A0A6I7NTN8_9BACT8.230e-9774.87TonB-dependent receptor n=1 Tax=Balneolaceae bacte... [more]
A0A3B8VGM7_9BACT1.170e-9472.77TonB-dependent receptor n=1 Tax=Bacteroidetes bact... [more]
A0A2E9UFK2_9BACT6.930e-9470.16SusC/RagA family TonB-linked outer membrane protei... [more]
A0A1V5JG03_9BACT3.230e-8970.53TonB dependent receptor n=1 Tax=Bacteroidetes bact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105756contigM-pyrifera_M_contig105756:2..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score199.9
Seed ortholog evalue1.1e-48
Seed eggNOG ortholog643867.Ftrac_1805
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TonB-dependent receptor
EggNOG OGs47KYY@768503,4NDXS@976,COG1629@1,COG1629@2
COG Functional cat.P
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size576
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.2604878-CDS-M-pyrifera_M_contig105756:1..5771622815566.2604878-CDS-M-pyrifera_M_contig105756:1..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105756 2..577 +
1692277466.5894616-CDS-M-pyrifera_M_contig105756:1..5771692277466.5894616-CDS-M-pyrifera_M_contig105756:1..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105756 2..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105756.1230.1prot_M-pyrifera_M_contig105756.1230.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105756 2..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105756.1230.1

>prot_M-pyrifera_M_contig105756.1230.1 ID=prot_M-pyrifera_M_contig105756.1230.1|Name=mRNA_M-pyrifera_M_contig105756.1230.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
LSHAGIGDLRFVDVNGDGILNGEDRTNIGSSIPDFVYGFNISLDYKQFDV
SIDFQGQYGNEIFNGKNVVRPDPYNFEQHVWDRWTGEGTSNTEPRASYGG
YNFLPSDRFIHDGSYLRLRSFIIGYSLPVSLQTKLGLKQARFYLKATNLL
TFTKYTGYTPEIGSENVLSNGIDTGVYPIPRVISIGFNTTF*
back to top

mRNA from alignment at M-pyrifera_M_contig105756:2..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105756.1230.1 ID=mRNA_M-pyrifera_M_contig105756.1230.1|Name=mRNA_M-pyrifera_M_contig105756.1230.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig105756:2..577+ (Macrocystis pyrifera P11B4 male)
CTATCTCATGCAGGTATTGGCGATTTAAGATTTGTTGATGTAAATGGCGA TGGAATATTAAATGGGGAGGACCGAACAAATATTGGATCATCAATCCCGG ACTTTGTTTATGGGTTTAATATCAGTCTTGACTATAAACAGTTTGATGTA AGTATTGATTTTCAAGGTCAATATGGAAATGAAATCTTTAATGGGAAAAA CGTGGTCCGTCCAGACCCTTATAATTTTGAACAACATGTTTGGGATAGAT GGACAGGTGAAGGAACGAGTAATACAGAACCTAGGGCATCTTATGGAGGA TATAATTTCTTGCCTTCCGATCGTTTCATACATGATGGGAGCTACTTAAG GCTACGTAGTTTTATAATTGGCTACAGTTTACCAGTATCCCTTCAAACCA AATTAGGTTTAAAGCAAGCCAGATTTTACCTGAAGGCTACTAATCTACTA ACCTTTACTAAGTACACCGGATATACTCCGGAAATTGGAAGCGAAAATGT ACTATCAAATGGAATCGATACTGGGGTTTATCCAATTCCTAGAGTTATTT CAATAGGGTTTAACACAACATTTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105756:2..577+

>mRNA_M-pyrifera_M_contig105756.1230.1 ID=mRNA_M-pyrifera_M_contig105756.1230.1|Name=mRNA_M-pyrifera_M_contig105756.1230.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig105756:2..577+ (Macrocystis pyrifera P11B4 male)
CTATCTCATGCAGGTATTGGCGATTTAAGATTTGTTGATGTAAATGGCGA
TGGAATATTAAATGGGGAGGACCGAACAAATATTGGATCATCAATCCCGG
ACTTTGTTTATGGGTTTAATATCAGTCTTGACTATAAACAGTTTGATGTA
AGTATTGATTTTCAAGGTCAATATGGAAATGAAATCTTTAATGGGAAAAA
CGTGGTCCGTCCAGACCCTTATAATTTTGAACAACATGTTTGGGATAGAT
GGACAGGTGAAGGAACGAGTAATACAGAACCTAGGGCATCTTATGGAGGA
TATAATTTCTTGCCTTCCGATCGTTTCATACATGATGGGAGCTACTTAAG
GCTACGTAGTTTTATAATTGGCTACAGTTTACCAGTATCCCTTCAAACCA
AATTAGGTTTAAAGCAAGCCAGATTTTACCTGAAGGCTACTAATCTACTA
ACCTTTACTAAGTACACCGGATATACTCCGGAAATTGGAAGCGAAAATGT
ACTATCAAATGGAATCGATACTGGGGTTTATCCAATTCCTAGAGTTATTT
CAATAGGGTTTAACACAACATTTTAACTATCTCATGCAGGTATTGGCGAT
TTAAGATTTGTTGATGTAAATGGCGATGGAATATTAAATGGGGAGGACCG
AACAAATATTGGATCATCAATCCCGGACTTTGTTTATGGGTTTAATATCA
GTCTTGACTATAAACAGTTTGATGTAAGTATTGATTTTCAAGGTCAATAT
GGAAATGAAATCTTTAATGGGAAAAACGTGGTCCGTCCAGACCCTTATAA
TTTTGAACAACATGTTTGGGATAGATGGACAGGTGAAGGAACGAGTAATA
CAGAACCTAGGGCATCTTATGGAGGATATAATTTCTTGCCTTCCGATCGT
TTCATACATGATGGGAGCTACTTAAGGCTACGTAGTTTTATAATTGGCTA
CAGTTTACCAGTATCCCTTCAAACCAAATTAGGTTTAAAGCAAGCCAGAT
TTTACCTGAAGGCTACTAATCTACTAACCTTTACTAAGTACACCGGATAT
ACTCCGGAAATTGGAAGCGAAAATGTACTATCAAATGGAATCGATACTGG
GGTTTATCCAATTCCTAGAGTTATTTCAATAGGGTTTAACACAACATTTT
AA
back to top