mRNA_M-pyrifera_M_contig105667.1213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105667.1213.1
Unique NamemRNA_M-pyrifera_M_contig105667.1213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A2D5XNG9_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XNG9_9BACT)

HSP 1 Score: 157 bits (398), Expect = 4.080e-43
Identity = 90/199 (45.23%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   37 VRAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGVVGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE---------------VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRL 588
            VRAEE+  +L+ LL  +GV++Y +LT GR + G  GPVV RL+D RGR AG + A+RLRLEA RAG+TVT+ LE G   R G    F+               + R+ LP VDPVPWIE +PELF  +    P  DG WDL  VR   N LLAAD + G  +L    G+  G L      + DA G   R+LFAD++ L
Sbjct:  118 VRAEEIRAALQGLLAADGVYSYQVLTLGRLEQGYAGPVVLRLIDSRGRPAGLIAAERLRLEASRAGRTVTLRLEEGFEERAGVSVPFDGAAGVAAAGQKPRGGMRRVTLPGVDPVPWIEAMPELFGAQASQDPPDDGLWDLTAVRQEFNRLLAADPSVGRWRLAGLGGLVSGVLRDVQLVELDAEGHPLRRLFADALSL 316          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A7C1WK89_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WK89_9BACT)

HSP 1 Score: 155 bits (391), Expect = 6.760e-41
Identity = 85/188 (45.21%), Postives = 118/188 (62.77%), Query Frame = 1
Query:   40 RAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGVVGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE-----VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRL 588
            R EE+  +LR LLR  G  + DLL  G   +G +GPV+FR+LDDRG L G+L A+RLR+EA RA +T+++VLE G   RGG+   F      V RI +  +DP  ++  +PELF  ED+     DG W+LP +R  LN LL AD   G+ ++ +F GV    ++  H  QYDASG +QR+LFAD +R+
Sbjct:  302 RVEEIAAALRALLRVTGHRSLDLLNVGDLHEGWIGPVLFRILDDRGVLVGTLAAERLRMEASRAARTLSIVLEDGFEGRGGERTPFAGIEGGVRRITM-DIDPDDFVARVPELFSPEDVDPIEDDGVWNLPELRRTLNRLLLADARAGWYRIHSFAGVLGSEIVSVHLEQYDASGHMQRRLFADRMRI 488          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A518ERJ3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERJ3_9BACT)

HSP 1 Score: 144 bits (362), Expect = 8.870e-38
Identity = 87/197 (44.16%), Postives = 119/197 (60.41%), Query Frame = 1
Query:   37 VRAEEMLISLRNLLRTEGVFAYDLLTTGR----YDDGVVGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE--VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAA--DITGGYLQLKAFEGVADGFLLGAHFTQYDA-SGRVQRQLFADSVRLRFLD 600
            VRA+E+L SLR+LL TEGV   D+L  GR          GPV+ RLLDDRGR+ G + A R+RLE  R+G+T+T+V+E G   R G  + FE    R+ L  VDP PWIE  P+L  + D+   + DG WDL  VR+ L  LLAA  +  G   +L    G+ +G L    F + D+ +G+V R++FADS R+R +D
Sbjct:  124 VRADEILRSLRSLLMTEGVRNLDILEVGRPVSVEGRAGTGPVIGRLLDDRGRMVGMIKANRMRLEPSRSGRTITIVMEDGYESRQGVRQPFEGGTRRLFLGSVDPEPWIEAFPDLMDDADVAPVIDDGLWDLVSVRSRLARLLAASSEAGGAVWRLAGIGGIREGQLRDVQFAEIDSRTGQVSRRVFADSGRIRTMD 320          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A2D6HBY4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HBY4_9BACT)

HSP 1 Score: 140 bits (352), Expect = 2.540e-36
Identity = 85/202 (42.08%), Postives = 112/202 (55.45%), Query Frame = 1
Query:   40 RAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGVVGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE----------VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRLRFLDRGALV 615
            R  E+ ++L +LL  E V   +LL +GR  DG  GPVVFR++D+RGR  G+L A RLRLE  R G+++T+V E G   RGG    F           V RI L  VDP PWIE L ELF    L + V DG W+L +V+ ALN LLA D + G  +LK  EG+ +G L      +    GR  R L AD + +   +  AL+
Sbjct:  131 RRHEISLALGSLLVAERVEGLELLESGRVGDGWTGPVVFRVIDERGRPVGTLAADRLRLEGSRTGRSLTLVFEDGYERRGGARVPFAGTPEGVERGGVRRIVLARVDPRPWIEALGELFSAASLERIVDDGRWNLLLVQRALNRLLALDGSAGLYRLKTLEGIVEGVLCDVSIEELSRDGRTVRVLTADRLSISGGESSALL 332          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A518BM15_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BM15_9BACT)

HSP 1 Score: 129 bits (325), Expect = 3.350e-31
Identity = 71/155 (45.81%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  142 GPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFEV--ERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRLRFLD 600
            GPVVFR +DDRGRL G + A R+ LE  R+G+++T++LE G    GG+   FE    RI L HVDP P+++ LPELF  E L + + DG W LP+VR+ +N LLA +  G    L    G+ D      HF   D  GR QR LFAD +RL   D
Sbjct:  530 GPVVFRTVDDRGRLTGGIYAARMWLEGSRSGRSLTLMLEQGYRSEGGRRLPFENGRHRIELRHVDPEPFMDALPELFMSEALARVIDDGRWSLPMVRSTINGLLAREPAGSGYHLAWLGGIVDEEWHDVHFEVRDDQGRTQRHLFADRMRLDLKD 684          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A521KQ65_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KQ65_9BACT)

HSP 1 Score: 126 bits (316), Expect = 7.070e-31
Identity = 81/192 (42.19%), Postives = 103/192 (53.65%), Query Frame = 1
Query:   37 VRAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGV-----VGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFEV--ERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLAADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRLR 591
            VRA E+   +  LL ++G+    +L  GR    +     +GPV+ R +D  GRLAGSL A R+RLE  RA +TVT+VLE G     G    FE    RI LP VDP  W+E  P+LF  +       DG WD P VRAALN LLA D   GY Q+K   G+    L        D +GR+QR  F D++ LR
Sbjct:  155 VRAGELASRMNALLWSDGIRDLSVLDGGRVGPDLEHPAWIGPVLLRRVDGDGRLAGSLVADRMRLECSRAARTVTIVLEGGYEQVDGARTEFEPIGRRILLPLVDPDRWLEGCPDLFAADQQLSRRDDGLWDKPRVRAALNRLLAEDAAHGYWQVKDIGGIRGAELRDVQLLALDRAGRMQRLAFCDTLTLR 346          
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Match: A0A2D6Q9W8_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6Q9W8_9ARCH)

HSP 1 Score: 119 bits (299), Expect = 1.270e-28
Identity = 76/192 (39.58%), Postives = 103/192 (53.65%), Query Frame = 1
Query:   40 RAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGVVGPVVFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE-----------VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLL--AADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFAD 576
            R  ++++ L  LL +E V + D+L  GR  +G  GPVV RLLD+RGR  G L A+RLRLE  RAG  VT+V E G     G +  F            + RI LP ++P PW+E +PEL   +DL     DG WDL  +R  L+ LL  A  + GG+ +L    GV +  L      + D  GR  R++FAD
Sbjct:  140 RRRQLMLELNALLVSEQVLSMDVLEVGRIHEGWCGPVVVRLLDERGRPVGLLAAERLRLEVSRAGFGVTLVFEEGYERHAGVKTPFGPVEAGSGERTGLRRIHLPDLNPEPWVEAVPELVSAQDLLGSQDDGMWDLRALRQRLDGLLRAAGSVLGGW-RLMDLGGVVEEELRDVQLLERDEEGREVRRIFAD 330          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105667.1213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2D5XNG9_9BACT4.080e-4345.23Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A7C1WK89_9BACT6.760e-4145.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518ERJ3_9BACT8.870e-3844.16Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D6HBY4_9BACT2.540e-3642.08Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BM15_9BACT3.350e-3145.81Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KQ65_9BACT7.070e-3142.19Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D6Q9W8_9ARCH1.270e-2839.58Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105667contigM-pyrifera_M_contig105667:20..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.3569868-CDS-M-pyrifera_M_contig105667:19..6341622815565.3569868-CDS-M-pyrifera_M_contig105667:19..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105667 20..634 +
1692277466.2169895-CDS-M-pyrifera_M_contig105667:19..6341692277466.2169895-CDS-M-pyrifera_M_contig105667:19..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105667 20..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105667.1213.1prot_M-pyrifera_M_contig105667.1213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105667 20..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105667.1213.1

>prot_M-pyrifera_M_contig105667.1213.1 ID=prot_M-pyrifera_M_contig105667.1213.1|Name=mRNA_M-pyrifera_M_contig105667.1213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
EPEPEPEPDPGLVRAEEMLISLRNLLRTEGVFAYDLLTTGRYDDGVVGPV
VFRLLDDRGRLAGSLNAQRLRLEAGRAGQTVTVVLEAGSAHRGGQERAFE
VERIPLPHVDPVPWIEMLPELFREEDLGKPVGDGDWDLPVVRAALNDLLA
ADITGGYLQLKAFEGVADGFLLGAHFTQYDASGRVQRQLFADSVRLRFLD
RGALV
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mRNA from alignment at M-pyrifera_M_contig105667:20..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105667.1213.1 ID=mRNA_M-pyrifera_M_contig105667.1213.1|Name=mRNA_M-pyrifera_M_contig105667.1213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig105667:20..634+ (Macrocystis pyrifera P11B4 male)
GAGCCCGAGCCCGAGCCCGAGCCGGACCCCGGCCTCGTGCGCGCCGAGGA GATGCTGATCAGCCTGCGCAACCTGCTGCGCACCGAGGGCGTGTTCGCCT ACGACCTGCTCACGACCGGGCGCTACGACGACGGCGTGGTGGGGCCCGTC GTCTTCCGGCTGTTGGACGACCGCGGGCGCTTGGCCGGGTCCCTCAACGC CCAGCGCCTGCGGCTCGAGGCGGGCCGCGCCGGCCAGACCGTGACGGTCG TGCTCGAGGCCGGCAGCGCGCACCGCGGCGGCCAGGAGCGCGCCTTCGAG GTCGAGCGGATCCCGCTGCCGCACGTCGACCCGGTGCCGTGGATCGAGAT GCTGCCCGAGCTCTTCCGCGAGGAGGACCTCGGCAAGCCCGTCGGCGACG GCGACTGGGACCTGCCCGTCGTGCGGGCTGCGCTCAACGACCTCTTGGCC GCGGACATCACCGGCGGCTACCTGCAGCTCAAGGCCTTCGAAGGCGTCGC CGACGGCTTCCTGCTCGGCGCGCACTTCACCCAGTACGACGCGAGCGGGC GCGTCCAGCGCCAGCTGTTCGCCGACAGCGTGCGGCTGCGCTTTTTGGAC CGCGGCGCGCTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105667:20..634+

>mRNA_M-pyrifera_M_contig105667.1213.1 ID=mRNA_M-pyrifera_M_contig105667.1213.1|Name=mRNA_M-pyrifera_M_contig105667.1213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig105667:20..634+ (Macrocystis pyrifera P11B4 male)
GAGCCCGAGCCCGAGCCCGAGCCGGACCCCGGCCTCGTGCGCGCCGAGGA
GATGCTGATCAGCCTGCGCAACCTGCTGCGCACCGAGGGCGTGTTCGCCT
ACGACCTGCTCACGACCGGGCGCTACGACGACGGCGTGGTGGGGCCCGTC
GTCTTCCGGCTGTTGGACGACCGCGGGCGCTTGGCCGGGTCCCTCAACGC
CCAGCGCCTGCGGCTCGAGGCGGGCCGCGCCGGCCAGACCGTGACGGTCG
TGCTCGAGGCCGGCAGCGCGCACCGCGGCGGCCAGGAGCGCGCCTTCGAG
GTCGAGCGGATCCCGCTGCCGCACGTCGACCCGGTGCCGTGGATCGAGAT
GCTGCCCGAGCTCTTCCGCGAGGAGGACCTCGGCAAGCCCGTCGGCGACG
GCGACTGGGACCTGCCCGTCGTGCGGGCTGCGCTCAACGACCTCTTGGCC
GCGGACATCACCGGCGGCTACCTGCAGCTCAAGGCCTTCGAAGGCGTCGC
CGACGGCTTCCTGCTCGGCGCGCACTTCACCCAGTACGACGCGAGCGGGC
GCGTCCAGCGCCAGCTGTTCGCCGACAGCGTGCGGCTGCGCTTTTTGGAC
CGCGGCGCGCTCGTCGAGCCCGAGCCCGAGCCCGAGCCGGACCCCGGCCT
CGTGCGCGCCGAGGAGATGCTGATCAGCCTGCGCAACCTGCTGCGCACCG
AGGGCGTGTTCGCCTACGACCTGCTCACGACCGGGCGCTACGACGACGGC
GTGGTGGGGCCCGTCGTCTTCCGGCTGTTGGACGACCGCGGGCGCTTGGC
CGGGTCCCTCAACGCCCAGCGCCTGCGGCTCGAGGCGGGCCGCGCCGGCC
AGACCGTGACGGTCGTGCTCGAGGCCGGCAGCGCGCACCGCGGCGGCCAG
GAGCGCGCCTTCGAGGTCGAGCGGATCCCGCTGCCGCACGTCGACCCGGT
GCCGTGGATCGAGATGCTGCCCGAGCTCTTCCGCGAGGAGGACCTCGGCA
AGCCCGTCGGCGACGGCGACTGGGACCTGCCCGTCGTGCGGGCTGCGCTC
AACGACCTCTTGGCCGCGGACATCACCGGCGGCTACCTGCAGCTCAAGGC
CTTCGAAGGCGTCGCCGACGGCTTCCTGCTCGGCGCGCACTTCACCCAGT
ACGACGCGAGCGGGCGCGTCCAGCGCCAGCTGTTCGCCGACAGCGTGCGG
CTGCGCTTTTTGGACCGCGGCGCGCTCGTC
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