mRNA_M-pyrifera_M_contig105303.1136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105303.1136.1
Unique NamemRNA_M-pyrifera_M_contig105303.1136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A7C1UEX9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UEX9_9ACTN)

HSP 1 Score: 155 bits (393), Expect = 8.090e-45
Identity = 83/123 (67.48%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHLV 369
            G P D  ALALA P++LLAL  N+ AQH FAA AFWV DARS WF+YQKLVFV GGMLLPLEVLP  + ++AR LPF AMAY PARLASGH EP LLLVQ  WLV  G  A L F  G+ HLV
Sbjct:  145 GRPPDAAALALALPALLLALATNLLAQHAFAAIAFWVLDARSTWFLYQKLVFVLGGMLLPLEVLPDPVAAVARLLPFSAMAYVPARLASGHFEPELLLVQAFWLVAIGFVAHLVFRAGERHLV 267          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A538F8Y3_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F8Y3_9ACTN)

HSP 1 Score: 149 bits (376), Expect = 1.320e-43
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            G P    AL +AAPS++LA+  N+ AQH FA  AFW+RDARS WF+YQKLVFV G MLLPL+VLP  L + A WLPF+AMAYAPARLASGH+EPALL +QLGWLVV    A   F  G+  L
Sbjct:   36 GEPPRGAALVMAAPSLVLAVTCNLVAQHAFAGLAFWIRDARSTWFLYQKLVFVLGAMLLPLQVLPGWLHTTAAWLPFVAMAYAPARLASGHLEPALLGMQLGWLVVLAGLAWAVFAAGERRL 157          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A538FJM8_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FJM8_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 8.770e-42
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   16 PFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            P A  LA PS++LA+  N+ AQH FA AAFW+RDARS WF+YQKLVF+ GGML+PL+VLP  L ++A  LPFMAMAYAPARLASGH++P LL+VQL WL V    AA  F  G+  L
Sbjct:  139 PAAALLAVPSLVLAVACNLAAQHAFAGAAFWIRDARSTWFLYQKLVFILGGMLMPLQVLPGWLHALAGALPFMAMAYAPARLASGHLDPQLLVVQLAWLAVLAGAAAAVFGAGERRL 255          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: UPI0013042E0F (ABC-2 family transporter protein n=2 Tax=unclassified Kineosporia TaxID=2626061 RepID=UPI0013042E0F)

HSP 1 Score: 140 bits (353), Expect = 1.070e-38
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            GPP D     LA  S+ L +++NV AQH+ A+AAF +RD R+ WF+YQK VF+ GGMLLPLEVLP AL ++A W PFMAMAYAPARLA+G     LLLVQ GWLVV  A AA  F RGQ  L
Sbjct:  155 GPPPDALHGLLALVSLALGVVVNVAAQHVVASAAFRLRDVRATWFLYQKTVFILGGMLLPLEVLPGALRTLALWCPFMAMAYAPARLATGQGTALLLLVQAGWLVVLVAAAAFVFARGQRRL 276          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A7K0A0I9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0A0I9_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 1.320e-37
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            GPP     + LA PS++LA+  N+ AQH FA  AFW+ DA+SAWF+YQKL+F+ GGMLLPLE+LP A+   AR LPF AM+YAP RL +G+VEP LLL+Q+GWLV     A   F  G+  L
Sbjct:  131 GPPPSWNGVGLAIPSLVLAVCCNLAAQHAFAGIAFWLEDAKSAWFLYQKLIFLLGGMLLPLELLPDAMSGAARLLPFWAMSYAPGRLMAGYVEPWLLLLQVGWLVAMVGAAVAVFSSGERRL 252          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A7V9BRA8_9ACTN (ABC-2 family transporter protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9BRA8_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 1.600e-36
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   34 AAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHLV 369
            A P+ LLA+  N+  Q+ FAAAAFWV DA+S WF+YQKL+F+ GGMLLPLE+LP +L  IAR LPF   AY PARL SGH E  LL+VQLGWL+V  A A  AF  G++ LV
Sbjct:  145 ALPAALLAVGCNLTMQYSFAAAAFWVEDAKSTWFLYQKLIFLLGGMLLPLELLPESLAGIARLLPFWTTAYVPARLLSGHAEWQLLIVQLGWLIVLVAAALAAFRAGEKRLV 256          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A6L5FXU9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L5FXU9_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 5.050e-35
Identity = 59/122 (48.36%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            GPP    A+ LA P++ LA++ N+ +Q+ F  AAFW+ DA+ AWF+YQKL+F+ GGML+PLE  P A E++A +LPF  MAY P RL +GH EP L+++QL W+ V    A L F  G+  +
Sbjct:  134 GPPPSATAVLLALPAMALAVIANMVSQYAFGGAAFWIEDAKGAWFLYQKLIFIVGGMLIPLEFFPGAFETLAHYLPFWTMAYVPGRLMAGHFEPWLIVIQLAWIAVLFPLATLIFRSGERRM 255          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: A0A1K1QU50_9BACL (ABC-2 type transport system permease protein n=1 Tax=Paenibacillus sp. UNCCL117 TaxID=1502764 RepID=A0A1K1QU50_9BACL)

HSP 1 Score: 88.2 bits (217), Expect = 1.220e-18
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   67 NVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVE---PALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            N     L A  AFWV + R   F+Y KL+F  GGML+PLE+ P  L+ I  WLPF A+ Y PA+ A  +     P +L +Q+ WLVV G  A L + RG + L
Sbjct:  160 NFFLNLLLALCAFWVEETRGLEFVYHKLLFTIGGMLMPLEMFPELLQKICVWLPFQAVLYFPAKAAVQYESSSVPQMLAIQMLWLVVLGLAAVLVYRRGVKKL 262          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: UPI000AF6EEC3 (ABC-2 family transporter protein n=1 Tax=Gorillibacterium timonense TaxID=1689269 RepID=UPI000AF6EEC3)

HSP 1 Score: 87.8 bits (216), Expect = 1.760e-18
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   55 ALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLA---SGHVEPALLLVQLGWLVVFGAGAALAFHRGQEHL 366
            A  +N     + A AAFW+ + R   F+Y+KL+F  GGM++PLE+ P     ++ WLPF  + Y PA++A        P +L VQLGW++V G  A L + +G + L
Sbjct:  158 AFTVNFLLNLMLALAAFWIEETRGLEFVYRKLLFTIGGMMMPLEIFPTFFRKLSEWLPFQTVLYFPAKMAVAFDASELPKMLAVQLGWVLVLGVCAVLLYRKGVKKL 264          
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Match: UPI001789218B (ABC-2 family transporter protein n=2 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI001789218B)

HSP 1 Score: 87.8 bits (216), Expect = 2.310e-18
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:   55 ALLLNVCAQHLFAAAAFWVRDARSAWFIYQKLVFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLA---SGHVEPALLLVQLGWLVVFGAGAALAFHRG 354
            A+ +N       A  AFWV + R   F+Y KL+F  GGML+PLE+ P AL+ + RWLPF  + Y PAR A   S      +LL Q  W++V GAG AL +  G
Sbjct:  176 AVTVNFLLNMALALCAFWVEETRGLEFVYHKLLFTIGGMLMPLELFPRALQEVCRWLPFQTVLYVPARTAVRWSDFAIMPMLLTQGIWIIVLGAGVALMYRLG 278          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105303.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1UEX9_9ACTN8.090e-4567.48Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A538F8Y3_9ACTN1.320e-4363.11Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A538FJM8_9ACTN8.770e-4262.39Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
UPI0013042E0F1.070e-3860.66ABC-2 family transporter protein n=2 Tax=unclassif... [more]
A0A7K0A0I9_9ACTN1.320e-3755.74Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7V9BRA8_9ACTN1.600e-3660.71ABC-2 family transporter protein n=2 Tax=Actinomyc... [more]
A0A6L5FXU9_9ACTN5.050e-3548.36Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A1K1QU50_9BACL1.220e-1843.69ABC-2 type transport system permease protein n=1 T... [more]
UPI000AF6EEC31.760e-1838.32ABC-2 family transporter protein n=1 Tax=Gorilliba... [more]
UPI001789218B2.310e-1843.69ABC-2 family transporter protein n=2 Tax=unclassif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105303contigM-pyrifera_M_contig105303:12..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.7
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog1449063.JMLS01000001_gene4330
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ABC-2 family transporter protein
EggNOG OGs1UZ3Y@1239,26V8Z@186822,4HFHM@91061,COG4587@1,COG4587@2
COG Functional cat.S
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.1363294-CDS-M-pyrifera_M_contig105303:11..3951622815561.1363294-CDS-M-pyrifera_M_contig105303:11..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105303 12..395 +
1692277464.4618497-CDS-M-pyrifera_M_contig105303:11..3951692277464.4618497-CDS-M-pyrifera_M_contig105303:11..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105303 12..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105303.1136.1prot_M-pyrifera_M_contig105303.1136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105303 12..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105303.1136.1

>prot_M-pyrifera_M_contig105303.1136.1 ID=prot_M-pyrifera_M_contig105303.1136.1|Name=mRNA_M-pyrifera_M_contig105303.1136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
GPPVDPFALALAAPSVLLALLLNVCAQHLFAAAAFWVRDARSAWFIYQKL
VFVTGGMLLPLEVLPAALESIARWLPFMAMAYAPARLASGHVEPALLLVQ
LGWLVVFGAGAALAFHRGQEHLVRGTP*
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mRNA from alignment at M-pyrifera_M_contig105303:12..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105303.1136.1 ID=mRNA_M-pyrifera_M_contig105303.1136.1|Name=mRNA_M-pyrifera_M_contig105303.1136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig105303:12..395+ (Macrocystis pyrifera P11B4 male)
GGACCACCGGTCGACCCGTTCGCTCTCGCACTTGCTGCGCCGTCGGTGCT TCTCGCACTCCTGCTGAATGTCTGCGCCCAACATCTGTTCGCTGCTGCGG CCTTCTGGGTACGTGACGCTCGATCGGCATGGTTCATCTACCAGAAACTC GTCTTCGTCACCGGTGGCATGTTGCTGCCCCTGGAGGTGCTGCCGGCTGC ACTCGAGTCGATCGCCCGGTGGCTCCCCTTCATGGCGATGGCCTACGCCC CGGCTCGACTGGCATCGGGGCACGTCGAACCGGCGCTGCTCCTGGTGCAG CTCGGCTGGCTCGTCGTGTTCGGTGCCGGGGCAGCCCTGGCGTTTCACCG AGGCCAGGAACATCTCGTCCGGGGGACGCCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105303:12..395+

>mRNA_M-pyrifera_M_contig105303.1136.1 ID=mRNA_M-pyrifera_M_contig105303.1136.1|Name=mRNA_M-pyrifera_M_contig105303.1136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig105303:12..395+ (Macrocystis pyrifera P11B4 male)
GGACCACCGGTCGACCCGTTCGCTCTCGCACTTGCTGCGCCGTCGGTGCT
TCTCGCACTCCTGCTGAATGTCTGCGCCCAACATCTGTTCGCTGCTGCGG
CCTTCTGGGTACGTGACGCTCGATCGGCATGGTTCATCTACCAGAAACTC
GTCTTCGTCACCGGTGGCATGTTGCTGCCCCTGGAGGTGCTGCCGGCTGC
ACTCGAGTCGATCGCCCGGTGGCTCCCCTTCATGGCGATGGCCTACGCCC
CGGCTCGACTGGCATCGGGGCACGTCGAACCGGCGCTGCTCCTGGTGCAG
CTCGGCTGGCTCGTCGTGTTCGGTGCCGGGGCAGCCCTGGCGTTTCACCG
AGGCCAGGAACATCTCGTCCGGGGGACGCCATGAGGACCACCGGTCGACC
CGTTCGCTCTCGCACTTGCTGCGCCGTCGGTGCTTCTCGCACTCCTGCTG
AATGTCTGCGCCCAACATCTGTTCGCTGCTGCGGCCTTCTGGGTACGTGA
CGCTCGATCGGCATGGTTCATCTACCAGAAACTCGTCTTCGTCACCGGTG
GCATGTTGCTGCCCCTGGAGGTGCTGCCGGCTGCACTCGAGTCGATCGCC
CGGTGGCTCCCCTTCATGGCGATGGCCTACGCCCCGGCTCGACTGGCATC
GGGGCACGTCGAACCGGCGCTGCTCCTGGTGCAGCTCGGCTGGCTCGTCG
TGTTCGGTGCCGGGGCAGCCCTGGCGTTTCACCGAGGCCAGGAACATCTC
GTCCGGGGGACGCCATGA
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