mRNA_M-pyrifera_M_contig100525.112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100525.112.1
Unique NamemRNA_M-pyrifera_M_contig100525.112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A7S4HTV4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HTV4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.720e-9
Identity = 18/39 (46.15%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   22 VQPQHHCRCCGMIFCNRCTLFQTVVPAYEKQVRVCDVCH 138
            V  +HHCR CGM++CN+C+ +Q  +P+ +K +RVC++C+
Sbjct:    6 VTRRHHCRSCGMVYCNKCSTYQRALPSKDKNLRVCEICY 44
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A183IWL2_9BILA (FYVE-type domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IWL2_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 1.670e-8
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   22 VQPQHHCRCCGMIFCNRCTLFQTVVP--AYEKQVRVCDVCHEASLSP 156
            V+ +HHCR CG IFCNRC++  T +P   Y K VRVC+ C    LSP
Sbjct:   38 VRRRHHCRNCGRIFCNRCSINSTPLPNHGYSKPVRVCNRCFLCELSP 84
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: X1Z7B1_CAPTE (Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Capitella teleta TaxID=283909 RepID=X1Z7B1_CAPTE)

HSP 1 Score: 57.4 bits (137), Expect = 4.480e-8
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   16 TDVQPQHHCRCCGMIFCNRCTLFQTVVPAY--EKQVRVCDVCHE 141
            +  Q +HHCRCCG +FC++C+   +++P +  EK+VRVCD C++
Sbjct:  183 STFQRKHHCRCCGQVFCSKCSSKSSIIPKFGIEKEVRVCDSCYD 226
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A662YBC6_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBC6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.970e-7
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   13 RTDVQPQHHCRCCGMIFCNRCTLFQTVVP--AYEKQVRVCDVCHEA 144
            +T ++ +HHCRCCG +FC RCT  +  +P   Y   VRVC VC+ +
Sbjct:   33 KTILRNRHHCRCCGYVFCGRCTSHRMSLPDFGYYDVVRVCKVCYNS 78
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A0V1HDL7_9BILA (Lateral signaling target protein 2-like protein n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1HDL7_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 2.130e-7
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   22 VQPQHHCRCCGMIFCNRCTLFQTVVPA--YEKQVRVCDVCHEASLS 153
            ++ +HHCRCCG IFC RCT     +PA  Y K VRVCD C +  L+
Sbjct:  490 IRRRHHCRCCGKIFCGRCTSNTLPLPALGYAKAVRVCDRCFDQQLA 535
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A7S0Y0J2_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Y0J2_HEMAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.130e-7
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   31 QHHCRCCGMIFCNRCTLFQTVVPAYE--KQVRVCDVCHEASLSPN 159
            +HHCRCCGMIFCN CT F+  +P  E   QVR+C  C  A  + N
Sbjct:  452 KHHCRCCGMIFCNDCTGFKATLPELELNDQVRMCQSCFHARKASN 496
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A1S3JX40_LINUN (Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JX40_LINUN)

HSP 1 Score: 55.5 bits (132), Expect = 2.150e-7
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   31 QHHCRCCGMIFCNRCTLFQTVVPAY--EKQVRVCDVCHEASLSPN 159
            +HHCR CG +FC +C+   +++P +  EK+VRVCD CHE    P+
Sbjct:  178 KHHCRNCGQVFCGKCSSKNSIIPKFGIEKEVRVCDTCHEQLGKPS 222
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A218UP13_9PASE (Lateral signaling target protein 2 n=3 Tax=Passeriformes TaxID=9126 RepID=A0A218UP13_9PASE)

HSP 1 Score: 54.7 bits (130), Expect = 3.960e-7
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    4 RWPRTDVQPQHHCRCCGMIFCNRCTLFQTVVPAY--EKQVRVCDVCHEASLSP 156
            R P T ++ +HHCRCCG IFC RC+    V+P Y   K VRVC  C+   L P
Sbjct:  404 RSPFTLLRRRHHCRCCGKIFCARCSPNTAVLPYYGQTKPVRVCTHCYTTHLPP 456
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BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A5S6QPQ8_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QPQ8_TRIMR)

HSP 1 Score: 54.7 bits (130), Expect = 3.970e-7
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   22 VQPQHHCRCCGMIFCNRCTLFQTVVPA--YEKQVRVCDVCHE 141
            V+ +HHCRCCG IFC RCT     +P+  Y K VRVCD C E
Sbjct:  481 VRRRHHCRCCGNIFCGRCTTNFVPLPSLGYSKPVRVCDQCFE 522
[Close]
BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Match: A0A085NFS5_9BILA (FYVE-type domain-containing protein (Fragment) n=2 Tax=Trichuris TaxID=36086 RepID=A0A085NFS5_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 5.440e-7
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   22 VQPQHHCRCCGMIFCNRCTLFQTVVPA--YEKQVRVCDVCHE 141
            V+ +HHCRCCG IFC RCT     +P+  Y K VRVCD C E
Sbjct:  490 VRRRHHCRCCGNIFCGRCTTNFVPLPSLGYAKPVRVCDQCFE 531
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100525.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HTV4_9EUKA2.720e-946.15Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A183IWL2_9BILA1.670e-853.19FYVE-type domain-containing protein n=1 Tax=Soboli... [more]
X1Z7B1_CAPTE4.480e-845.45Hepatocyte growth factor-regulated tyrosine kinase... [more]
A0A662YBC6_9STRA1.970e-745.65FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A0V1HDL7_9BILA2.130e-752.17Lateral signaling target protein 2-like protein n=... [more]
A0A7S0Y0J2_HEMAN2.130e-753.33Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A1S3JX40_LINUN2.150e-746.67Hepatocyte growth factor-regulated tyrosine kinase... [more]
A0A218UP13_9PASE3.960e-749.06Lateral signaling target protein 2 n=3 Tax=Passeri... [more]
A0A5S6QPQ8_TRIMR3.970e-757.14Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
A0A085NFS5_9BILA5.440e-757.14FYVE-type domain-containing protein (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100525contigM-pyrifera_M_contig100525:84..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog7070.TC015976-PA
KEGG koko:K12182
KEGG Pathwayko04144,ko04145,map04144,map04145
KEGG ModuleM00408
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001505,GO:0001667,GO:0001932,GO:0001933,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006810,GO:0006836,GO:0006887,GO:0006897,GO:0006928,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0008021,GO:0008150,GO:0008152,GO:0008293,GO:0008592,GO:0008593,GO:0009888,GO:0009889,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010563,GO:0010604,GO:0010605,GO:0010631,GO:0010632,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016197,GO:0016322,GO:0016477,GO:0016482,GO:0017156,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0021700,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0023061,GO:0030133,GO:0030154,GO:0030182,GO:0030334,GO:0030707,GO:0030855,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032270,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033565,GO:0033619,GO:0034622,GO:0036452,GO:0040011,GO:0040012,GO:0040036,GO:0042058,GO:0042059,GO:0042325,GO:0042326,GO:0042551,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0045022,GO:0045055,GO:0045202,GO:0045743,GO:0045752,GO:0045936,GO:0046903,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051270,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060429,GO:0061356,GO:0061357,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070382,GO:0071695,GO:0071704,GO:0071840,GO:0071985,GO:0080090,GO:0090087,GO:0090130,GO:0090132,GO:0090287,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097734,GO:0098657,GO:0098793,GO:0098916,GO:0098927,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140029,GO:0140112,GO:1901184,GO:1901185,GO:1901564,GO:1903320,GO:1903322,GO:1903506,GO:1903530,GO:1903532,GO:1904951,GO:1990182,GO:2000026,GO:2000112,GO:2000145,GO:2000274,GO:2001141
EggNOG free text desc.Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded
EggNOG OGs38EGA@33154,3BC1H@33208,3CW1I@33213,3SGEV@50557,41VTG@6656,KOG1818@1,KOG1818@2759
COG Functional cat.TU
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815501.7304575-CDS-M-pyrifera_M_contig100525:83..2691622815501.7304575-CDS-M-pyrifera_M_contig100525:83..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100525 84..269 +
1692277440.1804543-CDS-M-pyrifera_M_contig100525:83..2691692277440.1804543-CDS-M-pyrifera_M_contig100525:83..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100525 84..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100525.112.1prot_M-pyrifera_M_contig100525.112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100525 84..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100525.112.1

>prot_M-pyrifera_M_contig100525.112.1 ID=prot_M-pyrifera_M_contig100525.112.1|Name=mRNA_M-pyrifera_M_contig100525.112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MRWPRTDVQPQHHCRCCGMIFCNRCTLFQTVVPAYEKQVRVCDVCHEASL
SPNKFLILETKQ
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mRNA from alignment at M-pyrifera_M_contig100525:84..269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100525.112.1 ID=mRNA_M-pyrifera_M_contig100525.112.1|Name=mRNA_M-pyrifera_M_contig100525.112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig100525:84..269+ (Macrocystis pyrifera P11B4 male)
ATGAGATGGCCTCGTACTGACGTGCAACCCCAGCACCACTGCAGATGCTG
CGGCATGATCTTCTGCAACCGCTGCACTCTCTTCCAGACTGTGGTACCAG
CCTACGAGAAGCAAGTGCGGGTGTGCGACGTGTGCCACGAGGCGTCGCTG
AGCCCCAACAAGTTTCTCATCCTGGAGACGAAGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100525:84..269+

>mRNA_M-pyrifera_M_contig100525.112.1 ID=mRNA_M-pyrifera_M_contig100525.112.1|Name=mRNA_M-pyrifera_M_contig100525.112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig100525:84..269+ (Macrocystis pyrifera P11B4 male)
ATGAGATGGCCTCGTACTGACGTGCAACCCCAGCACCACTGCAGATGCTG
CGGCATGATCTTCTGCAACCGCTGCACTCTCTTCCAGACTGTGGTACCAG
CCTACGAGAAGCAAGTGCGGGTGTGCGACGTGTGCCACGAGGCGTCGCTG
AGCCCCAACAAGTTTCTCATCCTGGAGACGAAGCAAATGAGATGGCCTCG
TACTGACGTGCAACCCCAGCACCACTGCAGATGCTGCGGCATGATCTTCT
GCAACCGCTGCACTCTCTTCCAGACTGTGGTACCAGCCTACGAGAAGCAA
GTGCGGGTGTGCGACGTGTGCCACGAGGCGTCGCTGAGCCCCAACAAGTT
TCTCATCCTGGAGACGAAGCAA
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