mRNA_M-pyrifera_M_contig104460.958.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104460.958.1
Unique NamemRNA_M-pyrifera_M_contig104460.958.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104460.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104460contigM-pyrifera_M_contig104460:98..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.7099218-CDS-M-pyrifera_M_contig104460:97..2091622815551.7099218-CDS-M-pyrifera_M_contig104460:97..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104460 98..209 -
1692277460.1076672-CDS-M-pyrifera_M_contig104460:97..2091692277460.1076672-CDS-M-pyrifera_M_contig104460:97..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104460 98..209 -
1622815551.724817-CDS-M-pyrifera_M_contig104460:224..6401622815551.724817-CDS-M-pyrifera_M_contig104460:224..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104460 225..640 -
1692277460.123742-CDS-M-pyrifera_M_contig104460:224..6401692277460.123742-CDS-M-pyrifera_M_contig104460:224..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104460 225..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104460.958.1prot_M-pyrifera_M_contig104460.958.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104460 98..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104460.958.1

>prot_M-pyrifera_M_contig104460.958.1 ID=prot_M-pyrifera_M_contig104460.958.1|Name=mRNA_M-pyrifera_M_contig104460.958.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
EVRSVARNFLSLADARRLRVTRAWVPEAPPTSAPAPLAKATANLVWLALE
SPDFAVAVAPEGDVQPKRAARLFRAHLGIDPAAGHVVREALVQELRTVPT
EDGTTRTEVVPGTAMWVHLADRMALGATSLPGTVHVHLDGLAFEDKPRQE
LYLLRGELNPELPPATFTPPELADE*
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mRNA from alignment at M-pyrifera_M_contig104460:98..640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104460.958.1 ID=mRNA_M-pyrifera_M_contig104460.958.1|Name=mRNA_M-pyrifera_M_contig104460.958.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig104460:98..640- (Macrocystis pyrifera P11B4 male)
GAGGTGCGCAGCGTCGCGCGCAACTTCCTGTCGCTGGCCGATGCCCGGCG
CCTGCGGGTGACGCGGGCGTGGGTGCCCGAAGCGCCGCCGACCAGCGCGC
CCGCACCGCTCGCCAAGGCCACCGCGAACCTCGTCTGGCTGGCGCTCGAG
AGCCCCGACTTCGCGGTCGCGGTCGCACCCGAGGGCGACGTCCAGCCCAA
GCGCGCTGCGCGCCTGTTCCGCGCGCACCTCGGCATCGACCCGGCTGCCG
GCCACGTGGTCCGCGAGGCGCTGGTCCAGGAGCTGCGCACCGTCCCCACC
GAGGACGGCACCACGCGCACGGAGGTCGTCCCCGGCACCGCGATGTGGGT
CCACCTGGCGGACCGCATGGCGCTGGGCGCGACGAGCCTGCCCGGCACCG
TCCACGTGCACCTCGAGTAGCCGTCCCCGAGCGGCCTCGCCTTTGAGGAC
AAGCCGCGCCAGGAGCTCTATCTGTTGCGCGGCGAGCTCAACCCCGAGCT
GCCGCCGGCGACCTTCACGCCGCCCGAGCTCGCGGACGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104460:98..640-

>mRNA_M-pyrifera_M_contig104460.958.1 ID=mRNA_M-pyrifera_M_contig104460.958.1|Name=mRNA_M-pyrifera_M_contig104460.958.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig104460:98..640- (Macrocystis pyrifera P11B4 male)
GAGGTGCGCAGCGTCGCGCGCAACTTCCTGTCGCTGGCCGATGCCCGGCG
CCTGCGGGTGACGCGGGCGTGGGTGCCCGAAGCGCCGCCGACCAGCGCGC
CCGCACCGCTCGCCAAGGCCACCGCGAACCTCGTCTGGCTGGCGCTCGAG
AGCCCCGACTTCGCGGTCGCGGTCGCACCCGAGGGCGACGTCCAGCCCAA
GCGCGCTGCGCGCCTGTTCCGCGCGCACCTCGGCATCGACCCGGCTGCCG
GCCACGTGGTCCGCGAGGCGCTGGTCCAGGAGCTGCGCACCGTCCCCACC
GAGGACGGCACCACGCGCACGGAGGTCGTCCCCGGCACCGCGATGTGGGT
CCACCTGGCGGACCGCATGGCGCTGGGCGCGACGAGCCTGCCCGGCACCG
TCCACGTGCACCTCGAGAGGTGCGCAGCGTCGCGCGCAACTTCCTGTCGC
TGGCCGATGCCCGGCGCCTGCGGGTGACGCGGGCGTGGGTGCCCGAAGCG
CCGCCGACCAGCGCGCCCGCACCGCTCGCCAAGGCCACCGCGAACCTCGT
CTGGCTGGCGCTCGAGAGCCCCGACTTCGCGGTCGCGGTCGCACCCGAGG
GCGACGTCCAGCCCAAGCGCGCTGCGCGCCTGTTCCGCGCGCACCTCGGC
ATCGACCCGGCTGCCGGCCACGTGGTCCGCGAGGCGCTGGTCCAGGAGCT
GCGCACCGTCCCCACCGAGGACGGCACCACGCGCACGGAGGTCGTCCCCG
GCACCGCGATGTGGGTCCACCTGGCGGACCGCATGGCGCTGGGCGCGACG
AGCCTGCCCGGCACCGTCCACGTGCACCTCGACGGCCTCGCCTTTGAGGA
CAAGCCGCGCCAGGAGCTCTATCTGTTGCGCGGCGAGCTCAACCCCGAGC
TGCCGCCGGCGACCTTCACGCCGCCCGAGCTCGCGGACGAGTAGCGGCCT
CGCCTTTGAGGACAAGCCGCGCCAGGAGCTCTATCTGTTGCGCGGCGAGC
TCAACCCCGAGCTGCCGCCGGCGACCTTCACGCCGCCCGAGCTCGCGGAC
GAGTAG
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