mRNA_M-pyrifera_M_contig104444.952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104444.952.1
Unique NamemRNA_M-pyrifera_M_contig104444.952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: L8HDL8_ACACA (MYND finger domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDL8_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 3.500e-12
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   49 PKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            P++ILLS ++RLLL+ G  HKGQ+  +VYQI++     FR +FYD + +  DACF+PDS  L+ +  R
Sbjct:  143 PRKILLSPNKRLLLMHGALHKGQNSLLVYQIMEDTPPYFRLIFYDMSFTFLDACFSPDSKSLVTIPSR 210
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: UPI000644BAD2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BAD2)

HSP 1 Score: 68.6 bits (166), Expect = 1.680e-11
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   43 RQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            R+P+++LLS D+RLLL+ G  +KG  C  VY+I + G   F+ +FYD +++  DACF+ DS  L+A+  R
Sbjct:  240 RRPRKVLLSHDKRLLLIIGCYYKGLRCLTVYKINEEGPNYFQLIFYDTSMAYIDACFSSDSQMLVAILSR 309
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: A0A8J4PJN5_9MYCE (MYND-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PJN5_9MYCE)

HSP 1 Score: 68.6 bits (166), Expect = 1.690e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   31 TGGVRQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            T   R+P++I+LS D+RLL++ G  +KG SC  VY+IL+ G + F+ ++YD + +  DACF+ DS  L  +  R
Sbjct:  234 TTRYRKPRKIILSHDKRLLMIIGCFYKGISCLTVYRILEDGPDHFQLIYYDSSFTFIDACFSSDSKMLACILSR 307
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: A0A151ZAF2_9MYCE (MYND-type domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAF2_9MYCE)

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   43 RQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            R+P+++LLS D+RLLL+ G  +KG S   VY+IL+ G E F+ ++YD + +  DACF+ DS  L+++  R
Sbjct:  184 RKPRKVLLSHDKRLLLIIGCFYKGISSLTVYKILEEGPEYFQLIYYDSSFTFIDACFSSDSTMLVSILSR 253
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: F0Z7C3_DICPU (MYND-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z7C3_DICPU)

HSP 1 Score: 66.2 bits (160), Expect = 1.090e-10
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   43 RQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            R+P++IL+S D+RLL++ G   KG SC  +Y+I++ G   F+ +FYD + +  DACF+ DS  + A+  R
Sbjct:  172 RRPRKILVSHDKRLLMIIGCFIKGVSCLTIYRIVEEGPNYFQLIFYDSSFTYVDACFSSDSTMMTAILAR 241
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: D3B1G1_POLPP (MYND-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1G1_POLPP)

HSP 1 Score: 66.2 bits (160), Expect = 1.090e-10
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   43 RQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR 252
            R+P+++LLS D+RLL++ G  HKG  C  VY+I + G +  + +FYD + +  DACF+ DS  L+A+  R
Sbjct:  173 RKPRKVLLSHDKRLLMVIGSFHKGLRCLTVYKINEDGPDYLQLIFYDSSFTYIDACFSSDSQMLVAILAR 242
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: A0A7S4HW38_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HW38_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VHRFTFLPEATGGVRQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHG 153
            VHRF+FL   +G    P++++LS DRRLLL+FG+Q + QSC VVYQIL+ G
Sbjct:   94 VHRFSFLRNESGFC-PPRKLVLSPDRRLLLVFGIQFRSQSCLVVYQILESG 143
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BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Match: Q54X94_DICDI (MYND-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54X94_DICDI)

HSP 1 Score: 62.8 bits (151), Expect = 1.830e-9
Identity = 29/78 (37.18%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   43 RQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDHGAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLR-PHSLQVL 273
            R+P+++L+S D++LL++ G   KG S   +Y+IL  G   F+ +FYD + +  DACFT DS  + ++  R P+ + +L
Sbjct:  236 RKPRKLLVSHDKKLLMIIGATIKGVSSLTIYKILKEGPNYFQLLFYDTSFTYLDACFTSDSTAMTSILARYPNFIFIL 313
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104444.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
L8HDL8_ACACA3.500e-1247.06MYND finger domain containing protein n=1 Tax=Acan... [more]
UPI000644BAD21.680e-1144.29hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PJN5_9MYCE1.690e-1141.89MYND-type domain-containing protein n=1 Tax=Polysp... [more]
A0A151ZAF2_9MYCE2.300e-1144.29MYND-type domain-containing protein n=1 Tax=Tieghe... [more]
F0Z7C3_DICPU1.090e-1041.43MYND-type domain-containing protein n=1 Tax=Dictyo... [more]
D3B1G1_POLPP1.090e-1042.86MYND-type domain-containing protein n=1 Tax=Polysp... [more]
A0A7S4HW38_9EUKA1.090e-956.86Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
Q54X94_DICDI1.830e-937.18MYND-type domain-containing protein n=1 Tax=Dictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104444contigM-pyrifera_M_contig104444:48..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog5786.XP_003283305.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MYND finger
EggNOG OGs299RT@1,2RGU2@2759,3XGDE@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.4340196-CDS-M-pyrifera_M_contig104444:47..3201622815551.4340196-CDS-M-pyrifera_M_contig104444:47..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104444 48..320 -
1692277459.9829886-CDS-M-pyrifera_M_contig104444:47..3201692277459.9829886-CDS-M-pyrifera_M_contig104444:47..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104444 48..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104444.952.1prot_M-pyrifera_M_contig104444.952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104444 48..320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104444.952.1

>prot_M-pyrifera_M_contig104444.952.1 ID=prot_M-pyrifera_M_contig104444.952.1|Name=mRNA_M-pyrifera_M_contig104444.952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
VHRFTFLPEATGGVRQPKRILLSADRRLLLLFGVQHKGQSCAVVYQILDH
GAERFRPVFYDRTLSLHDACFTPDSCGLLAVRLRPHSLQVL
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mRNA from alignment at M-pyrifera_M_contig104444:48..320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104444.952.1 ID=mRNA_M-pyrifera_M_contig104444.952.1|Name=mRNA_M-pyrifera_M_contig104444.952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig104444:48..320- (Macrocystis pyrifera P11B4 male)
GTACACCGCTTTACGTTCCTGCCAGAGGCCACAGGGGGAGTGCGGCAGCC
GAAGAGAATCCTCTTGAGCGCCGACCGTCGGCTGTTGCTGTTGTTTGGAG
TCCAGCACAAGGGCCAGAGCTGTGCGGTGGTCTACCAGATCCTCGACCAT
GGAGCAGAGCGCTTTCGCCCCGTGTTCTATGACCGCACCCTTAGCCTGCA
CGACGCCTGCTTCACGCCCGACTCCTGCGGCCTTCTTGCCGTACGTCTTC
GCCCTCACTCCCTGCAAGTCCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104444:48..320-

>mRNA_M-pyrifera_M_contig104444.952.1 ID=mRNA_M-pyrifera_M_contig104444.952.1|Name=mRNA_M-pyrifera_M_contig104444.952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig104444:48..320- (Macrocystis pyrifera P11B4 male)
GTACACCGCTTTACGTTCCTGCCAGAGGCCACAGGGGGAGTGCGGCAGCC
GAAGAGAATCCTCTTGAGCGCCGACCGTCGGCTGTTGCTGTTGTTTGGAG
TCCAGCACAAGGGCCAGAGCTGTGCGGTGGTCTACCAGATCCTCGACCAT
GGAGCAGAGCGCTTTCGCCCCGTGTTCTATGACCGCACCCTTAGCCTGCA
CGACGCCTGCTTCACGCCCGACTCCTGCGGCCTTCTTGCCGTACGTCTTC
GCCCTCACTCCCTGCAAGTCCTTGTACACCGCTTTACGTTCCTGCCAGAG
GCCACAGGGGGAGTGCGGCAGCCGAAGAGAATCCTCTTGAGCGCCGACCG
TCGGCTGTTGCTGTTGTTTGGAGTCCAGCACAAGGGCCAGAGCTGTGCGG
TGGTCTACCAGATCCTCGACCATGGAGCAGAGCGCTTTCGCCCCGTGTTC
TATGACCGCACCCTTAGCCTGCACGACGCCTGCTTCACGCCCGACTCCTG
CGGCCTTCTTGCCGTACGTCTTCGCCCTCACTCCCTGCAAGTCCTT
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