mRNA_M-pyrifera_M_contig104437.948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104437.948.1
Unique NamemRNA_M-pyrifera_M_contig104437.948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104437.948.1 vs. uniprot
Match: UPI000C83A703 (cell wall-binding repeat-containing protein n=2 Tax=Raoultibacter timonensis TaxID=1907662 RepID=UPI000C83A703)

HSP 1 Score: 53.5 bits (127), Expect = 6.400e-6
Identity = 38/118 (32.20%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:    4 GGGIFMEGVTEFAADDTVIEACSATQFGGGVYLSGSTA-------SFTNTNIRSNNAYNGGGVYAVRGVQLTSKVNLTDVTIADNSATSTGGGYFCDSGWLGALDL----TLSGNTAS 324
            GGG+     T++   D  I   +AT  GGGVY+S + +       +  ++ I  N A NGGG++  +     S++ L   T++DN AT  GGG       L  L        SGNTA+
Sbjct:  386 GGGVTFSTFTDYEISDCTIIDNTATDEGGGVYVSSAVSGTLPTSVTIADSEISGNTATNGGGLFGGQYKTYNSQIKLEGTTVSDNVATEDGGGVHMQDATLATLHADAATVFSGNTAA 503
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104437.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000C83A7036.400e-632.20cell wall-binding repeat-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104437contigM-pyrifera_M_contig104437:315..644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.1591048-CDS-M-pyrifera_M_contig104437:314..6261622815551.1591048-CDS-M-pyrifera_M_contig104437:314..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104437 315..626 -
1692277459.8471308-CDS-M-pyrifera_M_contig104437:314..6261692277459.8471308-CDS-M-pyrifera_M_contig104437:314..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104437 315..626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.180168-UTR-M-pyrifera_M_contig104437:626..6441622815551.180168-UTR-M-pyrifera_M_contig104437:626..644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104437 627..644 -
1692277459.8566275-UTR-M-pyrifera_M_contig104437:626..6441692277459.8566275-UTR-M-pyrifera_M_contig104437:626..644Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104437 627..644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104437.948.1prot_M-pyrifera_M_contig104437.948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104437 315..626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104437.948.1

>prot_M-pyrifera_M_contig104437.948.1 ID=prot_M-pyrifera_M_contig104437.948.1|Name=mRNA_M-pyrifera_M_contig104437.948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MEGVTEFAADDTVIEACSATQFGGGVYLSGSTASFTNTNIRSNNAYNGGG
VYAVRGVQLTSKVNLTDVTIADNSATSTGGGYFCDSGWLGALDLTLSGNT
ASQG
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mRNA from alignment at M-pyrifera_M_contig104437:315..644-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104437.948.1 ID=mRNA_M-pyrifera_M_contig104437.948.1|Name=mRNA_M-pyrifera_M_contig104437.948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig104437:315..644- (Macrocystis pyrifera P11B4 male)
CATGGCGGTGGTATCTTCATGGAAGGAGTGACAGAGTTCGCTGCTGACGA
CACAGTGATCGAGGCGTGCTCCGCCACACAGTTCGGTGGAGGCGTCTACC
TCAGCGGCTCCACCGCCTCCTTCACGAACACGAACATACGGTCCAACAAC
GCTTACAACGGCGGCGGCGTTTATGCTGTCAGAGGCGTGCAGCTCACTAG
CAAGGTGAACCTGACCGACGTCACCATCGCGGACAACTCCGCGACCAGCA
CTGGCGGCGGATACTTCTGCGACAGCGGCTGGCTTGGTGCCCTCGACCTC
ACTCTCTCGGGCAACACTGCTTCCCAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104437:315..644-

>mRNA_M-pyrifera_M_contig104437.948.1 ID=mRNA_M-pyrifera_M_contig104437.948.1|Name=mRNA_M-pyrifera_M_contig104437.948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig104437:315..644- (Macrocystis pyrifera P11B4 male)
ATGGAAGGAGTGACAGAGTTCGCTGCTGACGACACAGTGATCGAGGCGTG
CTCCGCCACACAGTTCGGTGGAGGCGTCTACCTCAGCGGCTCCACCGCCT
CCTTCACGAACACGAACATACGGTCCAACAACGCTTACAACGGCGGCGGC
GTTTATGCTGTCAGAGGCGTGCAGCTCACTAGCAAGGTGAACCTGACCGA
CGTCACCATCGCGGACAACTCCGCGACCAGCACTGGCGGCGGATACTTCT
GCGACAGCGGCTGGCTTGGTGCCCTCGACCTCACTCTCTCGGGCAACACT
GCTTCCCAGGGCATGGAAGGAGTGACAGAGTTCGCTGCTGACGACACAGT
GATCGAGGCGTGCTCCGCCACACAGTTCGGTGGAGGCGTCTACCTCAGCG
GCTCCACCGCCTCCTTCACGAACACGAACATACGGTCCAACAACGCTTAC
AACGGCGGCGGCGTTTATGCTGTCAGAGGCGTGCAGCTCACTAGCAAGGT
GAACCTGACCGACGTCACCATCGCGGACAACTCCGCGACCAGCACTGGCG
GCGGATACTTCTGCGACAGCGGCTGGCTTGGTGCCCTCGACCTCACTCTC
TCGGGCAACACTGCTTCCCAGGGC
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