mRNA_M-pyrifera_M_contig10433.921.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10433.921.1
Unique NamemRNA_M-pyrifera_M_contig10433.921.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10433.921.1 vs. uniprot
Match: D7G310_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G310_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.890e-8
Identity = 101/288 (35.07%), Postives = 130/288 (45.14%), Query Frame = 1 
Query:    1 NIGSVYERLHAASQETQRRKSLRDKMDPPGCTFRPNLTLYDQKTRP-------------------AQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSLPSH-------SHGHTPEPADYGSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYDTALGGAAARVQVDRTGRNIPYRESRFSPRRRRQRVS---EGQLHDRLYKLGEELQRQVAQQNRFML-QRCARRRNRSPLNPSELHREKEEREELKQCTFAPTFYTKAHR 774
            N  SV++RL AA +E ++RK++  KM PPGCTFRP + ++    RP                   AQS       XXXXXXXXXXXXXXXXXXXXXXXX + S  S+         G+ P P    S                                                         A    +VD  G  IPYRESRFSPRRRR++     +G  +D  +  GE  +   A +  F L  R  R+RN SP +  +  RE++E EELK CTF+P  +TKA+R
Sbjct:  527 NGSSVFDRLVAAGEEAKQRKAMLGKMTPPGCTFRPQVNVHGNGKRPPGHASNSAGSTQNGGGTFAAQSQPHPQHPXXXXXXXXXXXXXXXXXXXXXXXXQTGSYHSNPGNDGYGKDGNRPPPPRRPSAGAPGGSGDWAVTQKGRRSDEGSVAGISDTAAHHAADKNFLRELAAAASXXXXXAADAVPVAEVDEEGARIPYRESRFSPRRRRRKQGGGYDGNGNDG-HGGGESGRESPACERLFELGHRQQRKRNDSPRDTPQSQRERDELEELKLCTFSPVLFTKAYR 813
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BLAST of mRNA_M-pyrifera_M_contig10433.921.1 vs. uniprot
Match: A0A6H5KML4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.770e-5
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:  487 VQVDRTGRNIPYRESRFSPRRRRQRVSEGQLHDRLYKL--GEELQRQVAQQNRFML-QRCARRRNRSPLNPSELHREKEEREELKQCTFAPTFYTKAHR 774
             +VD  G  IPYRESRFSPRR R++   G   +       GE  +   A +  F L  R  R+RN  P +  +  RE++E EELK CTF+P   TKA+R
Sbjct:  815 AEVDEEGARIPYRESRFSPRRGRRKQGGGYDGNXXXXXXGGESGRESPACERLFELGHRQQRKRNDPPRDTPQSQRERDELEELKLCTFSPVLLTKAYR 913
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10433.921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G310_ECTSI1.890e-835.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KML4_9PHAE1.770e-542.42Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10433contigM-pyrifera_M_contig10433:6334..10083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_004140.1
Exons4
Model size774
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10433.921.1prot_M-pyrifera_M_contig10433.921.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10433 6334..10083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.734348-CDS-M-pyrifera_M_contig10433:6333..64411622815549.734348-CDS-M-pyrifera_M_contig10433:6333..6441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 6334..6441 +
1692277459.2525578-CDS-M-pyrifera_M_contig10433:6333..64411692277459.2525578-CDS-M-pyrifera_M_contig10433:6333..6441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 6334..6441 +
1622815549.747923-CDS-M-pyrifera_M_contig10433:8793..90221622815549.747923-CDS-M-pyrifera_M_contig10433:8793..9022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 8794..9022 +
1692277459.2675967-CDS-M-pyrifera_M_contig10433:8793..90221692277459.2675967-CDS-M-pyrifera_M_contig10433:8793..9022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 8794..9022 +
1622815549.763208-CDS-M-pyrifera_M_contig10433:9250..95721622815549.763208-CDS-M-pyrifera_M_contig10433:9250..9572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 9251..9572 +
1692277459.2769878-CDS-M-pyrifera_M_contig10433:9250..95721692277459.2769878-CDS-M-pyrifera_M_contig10433:9250..9572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 9251..9572 +
1622815549.7783587-CDS-M-pyrifera_M_contig10433:9968..100831622815549.7783587-CDS-M-pyrifera_M_contig10433:9968..10083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 9969..10083 +
1692277459.2859676-CDS-M-pyrifera_M_contig10433:9968..100831692277459.2859676-CDS-M-pyrifera_M_contig10433:9968..10083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10433 9969..10083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10433.921.1

>prot_M-pyrifera_M_contig10433.921.1 ID=prot_M-pyrifera_M_contig10433.921.1|Name=mRNA_M-pyrifera_M_contig10433.921.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp
NIGSVYERLHAASQETQRRKSLRDKMDPPGCTFRPNLTLYDQKTRPAQSP
PPVESLPPQPPVPPTPPPPPPLSPPLPLPPPSSSLPSHSHGHTPEPADYG
STPPPPPRSVSSSGGGGDGDGGGGSSERRQQQQQAAGSDSRSSSVIAAAA
TYDTALGGAAARVQVDRTGRNIPYRESRFSPRRRRQRVSEGQLHDRLYKL
GEELQRQVAQQNRFMLQRCARRRNRSPLNPSELHREKEEREELKQCTFAP
TFYTKAHR
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mRNA from alignment at M-pyrifera_M_contig10433:6334..10083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10433.921.1 ID=mRNA_M-pyrifera_M_contig10433.921.1|Name=mRNA_M-pyrifera_M_contig10433.921.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3750bp|location=Sequence derived from alignment at M-pyrifera_M_contig10433:6334..10083+ (Macrocystis pyrifera P11B4 male)
AACATCGGTAGCGTGTACGAGAGGCTGCACGCTGCGAGCCAGGAGACACA
GAGAAGAAAAAGTCTGCGCGACAAGATGGACCCGCCTGGGTGCACTTTTC
GGCCGAATGTAAGACACGCGTTACACTACTGCAGTATTATTAATTGTATC
GTAGCATTTTTTGGCGAACATATTCATGTCTGACGGACGCTTCAACTGAG
GGACCACTCTGCTCGGGAATATTATAACCATTTAGTGTGAAATTTTAGAG
TACAAATGGGGTTTATATTGTCGATCAAGCGTGATATGTAGTCCTTATTT
AATACAGCCTGGTTCAAGGCTACCGCCCAAACTTTTACCAGAAATCAATG
CCGATCGTAATATCTACTCGAGTGTCACATAGGTGGCAACGTACTAGTCG
CCATGAACAGTGGAAGAGGATGGCACAGCCCGTTTTTTATTGAGATCCTA
GAGCTAGCGGCGAAAGTGTGTCCCGACCAACCACTGGCCTTAAAATAGGT
CAGAAGCAGTACGTAGGCGTTTCCGTAGGAAGAAACGTTTTCTTTTCATG
TTGTTTTTTGAGCGAACCGGTTTTAGGCACTCCAAGGAACGTTTACAGAA
AGTTTTGAGAAAATATTCGAAGAACTTACTGCGCGACCAACATCAAGTAT
CCTTGACGCCAAAAGTTGATCCCATACGAAGTTAAGTACTTTCGAGGCAA
CGCCTATTTTTGCACTTTTACCGCACAACAGTCCAAATGTTCACGCCGTT
TCTTGTCACTTGCAGACGGACCCTGAACGTTTGGCACACGTATTCTGTGA
CCCCCTGCCCAGCCTTTAGCAAACGGGCTTGTTCTTTTTCGACGGCAACT
TTTGATGTCTTAAAACCCGAAAATCCAAGAAAATACACAAAACCAAGTCT
TGTCATGTTGAAAAAAAGAAAACACGATGTCAATAGCTCGGCACCGGCTA
GTAGAATATATCTGCCAAATTTCGGTGCCTAACTCCAAAAAAAGGTGTGA
ACATTGGACTCTGAAGGAATCGGGTGCTGTGAGCTTGAACTAGCTCGTAC
TGGAAGCCCTTTTGTGTCTCACGGCAGTAGCATTCGTTGTATACAGCTAT
TAATAGTATCAATAGTATTCATAGACCATAGAACAATTGGTCGGGTTTCC
CCTTCATGTCTTCTCAAAAGTATTTTTTTGTCAAGTTTTGGGCTGGTTTA
TGTATACGTAGAGCTCCTGAAGTGAGGTAAGAGCCTAAACAAAAGTGAGT
CCACCCTTCCCCTCCCCTCCCCTCCCCTCTACCATAGCATGCGCCGTACG
CTCGAGAAAAAAAAAGGCAAAGAAAACGCGACCGCACTGCTGGGAAACTG
AACAGACCGACCGACTGACCGACCGTCCGACCGACCGACCGGCATCCACC
AACGCGCACAAGCTGACGACAGTAACTAATACCCTGCTGCGCGAACCCAC
GTAATACCTACACCACAATAAGCAGCTGGGTGTCCGGTGGGTTTTAGCGC
CGGCGCCCGGCTCGAACGGATAGTGTTCTTTCGGAGCACGGTTCAGGGTT
GTGTTTGCCAGGGAGCTGTAATGTTTTATGACACTAGTGAGATAATAGCA
TTCCAACGGTATTGGGTAGCTCTACAGCGCCGTGAATAACTCTTTTAGGG
CTGCAGTCCCGTTTTGTGGACAAATTATTACTGATTCCAGTAGTTTCTCC
CGAAAACGGGACCGCAGCGCAAAAAGGGCTCCGTCAGTCCCAGTGAGACA
GTGTGGCCGAAAAGTGCTACATACCTCTATCGAAACACGGGTCACTGATC
TTTGCAGTTGAGCGAAGCACGCCGTACCGTGGAACACAGAACATATGGGT
AAAAGCGAGCAGACGCTTGCCTCGAGCGCCCGAATCACGTTCTCCCCGCG
GAACCTATCCTGGTATACATGTTGTCCCGCGTGACCATTCAACCCTGCTT
TACTTCACTGAACGCAAGTGGCCAACTAGTTTGTCAGTTGGCTTAGTAGG
TATTTAAAGTCAATTGCAAGTGGTAGTGGTGTGTGCGGAGTTCCGCGTCT
TTGTATCTACTGGAGGCGATTGTGGCTCGACGCGTTTTTTCCATTGGCAA
GGTTCCTTGTCAGTTTGTTGTCTTTTTTCGCCACCCAGCTGGTGCAATAA
GTAACCGTCAAGTCCAGCCAAGGTGTCTCACTCACAACCTTGATGGCTAC
GGACACTACTGACCCTCTTCCCCCCCATCCACCATTCATGCGACTCGCCA
AACAATCACGATGCTTTGCGCTTGGTGCAAGCAATGCCTGCCTGGTCGGT
GAACACCCGACGTGAGCTGTCCCGATACTGTAGGGATGCGAGGGTCTACG
GTCATACTACTACGGACATGCATGACATGAGTAATCCCCTCCCCCCCCCC
CCCCCCCCCGCGCCCAATCGCGTGCGGCGTTCGCGACAACCTCCTCCTTC
GCTCCTGCAGCTCACTCTGTACGATCAGAAGACGAGACCCGCACAATCAC
CGCCACCGGTGGAATCGCTGCCACCGCAGCCACCGGTGCCGCCGACACCA
CCACCGCCGCCACCGCTGTCGCCGCCGCTACCTTTACCACCGCCATCGTC
GTCGTTGCCTTCCCACTCTCATGGCCACACGCCTGAACCTGCAGACTACG
GGAGCACTCCTCCTCCCCCACCTCGCTCCGTCTCGTCTAGTGATCGTCGT
CGTGATGTAATCGGCCTTGTAGCAGCGTCCACCACCGCACCAACAGCCGC
CCCTGAGCTTAGAGGCGACAATGTTTCGGTGAACTGTGGCGGCGGCGGTG
GTGGTGGTGGTGGTGATGATGGTGGCGGTGGCAGCGGCGGGGGTGGGGGC
GGTGGTGGCGATGGCAGTGCTATAAGAGCGGCCGCGGCTGTCGACATTTT
TTCCGTAACTTGTGGAGGTGGTGGTGGTGGTGATGGTGATGGCGGCGGCG
GCAGCAGCGAAAGGAGACAGCAACAGCAGCAGGCGGCAGGATCCGATAGC
AGGAGCAGCAGCGTCATAGCAGCAGCGGCCACCTACGACACGGCACTCGG
TGGGGCCGCTGCCCGCGTGCAGGTGGATCGGACAGGGCGCAACATCCCTT
ACAGAGAATCGCGCTTCTCTCCGAGGAGACGTCGACAGAGAGTGAGCGAG
GGGCAGCTCCACGACAGATTGTATAAGTTGGGGGAGGAGCTTCAAAGGCA
AGTCGCTCAGCAAAATAGGTTTATGTTGCAGAGGTGCGCGTCCTCTTTTG
GTACTCATGATGTCGCGTCTGAAAGCCACATACCGTCTGAAAGCCACATG
CCACTCGGTCGCCAAGCGCAGTCGGAGAAGACGCGAATCCTAGACGATGT
GGTGGAAACGACGAGGGATTATCTCAAACTTATGTTGAAGGTCCCTTCGT
TGCTTTAATTCGCACTGCTATAGCTCGAGAATAATGAGGTATTTCTCTAC
GCGATCAGCCGGAGACTCTCACGCGGAGCTGCCACCCAACGGCCTTGATT
CGCCGGCAATCAACGTGGCATCTCGTCGTACAGACTAGTTGCTCCGTTCA
AATAAACACTGTTCAAAAACACCTTTGCATGAAACTCTAAAACGGGCTGC
GCACGTGCGTGAAATCACCATCCTTACGAATTTAGCAGGAGACGAAACCG
ATCGCCGCTTAACCCGTCGGAATTGCACCGGGAGAAGGAGGAGAGGGAGG
AGTTGAAGCAGTGTACCTTTGCGCCTACTTTTTACACCAAGGCCCACCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10433:6334..10083+

>mRNA_M-pyrifera_M_contig10433.921.1 ID=mRNA_M-pyrifera_M_contig10433.921.1|Name=mRNA_M-pyrifera_M_contig10433.921.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1548bp|location=Sequence derived from alignment at M-pyrifera_M_contig10433:6334..10083+ (Macrocystis pyrifera P11B4 male)
AACATCGGTAGCGTGTACGAGAGGCTGCACGCTGCGAGCCAGGAGACACA
GAGAAGAAAAAGTCTGCGCGACAAGATGGACCCGCCTGGGTGCACTTTTC
GGCCGAATAACATCGGTAGCGTGTACGAGAGGCTGCACGCTGCGAGCCAG
GAGACACAGAGAAGAAAAAGTCTGCGCGACAAGATGGACCCGCCTGGGTG
CACTTTTCGGCCGAATCTCACTCTGTACGATCAGAAGACGAGACCCGCAC
AATCACCGCCACCGGTGGAATCGCTGCCACCGCAGCCACCGGTGCCGCCG
ACACCACCACCGCCGCCACCGCTGTCGCCGCCGCTACCTTTACCACCGCC
ATCGTCGTCGTTGCCTTCCCACTCTCATGGCCACACGCCTGAACCTGCAG
ACTACGGGAGCACTCCTCCTCCCCCACCTCGCTCCGTCTCGTCTACTCAC
TCTGTACGATCAGAAGACGAGACCCGCACAATCACCGCCACCGGTGGAAT
CGCTGCCACCGCAGCCACCGGTGCCGCCGACACCACCACCGCCGCCACCG
CTGTCGCCGCCGCTACCTTTACCACCGCCATCGTCGTCGTTGCCTTCCCA
CTCTCATGGCCACACGCCTGAACCTGCAGACTACGGGAGCACTCCTCCTC
CCCCACCTCGCTCCGTCTCGTCTAGTGGTGGTGGTGGTGATGGTGATGGC
GGCGGCGGCAGCAGCGAAAGGAGACAGCAACAGCAGCAGGCGGCAGGATC
CGATAGCAGGAGCAGCAGCGTCATAGCAGCAGCGGCCACCTACGACACGG
CACTCGGTGGGGCCGCTGCCCGCGTGCAGGTGGATCGGACAGGGCGCAAC
ATCCCTTACAGAGAATCGCGCTTCTCTCCGAGGAGACGTCGACAGAGAGT
GAGCGAGGGGCAGCTCCACGACAGATTGTATAAGTTGGGGGAGGAGCTTC
AAAGGCAAGTCGCTCAGCAAAATAGGTTTATGTTGCAGAGGTGCGCGTGG
TGGTGGTGGTGATGGTGATGGCGGCGGCGGCAGCAGCGAAAGGAGACAGC
AACAGCAGCAGGCGGCAGGATCCGATAGCAGGAGCAGCAGCGTCATAGCA
GCAGCGGCCACCTACGACACGGCACTCGGTGGGGCCGCTGCCCGCGTGCA
GGTGGATCGGACAGGGCGCAACATCCCTTACAGAGAATCGCGCTTCTCTC
CGAGGAGACGTCGACAGAGAGTGAGCGAGGGGCAGCTCCACGACAGATTG
TATAAGTTGGGGGAGGAGCTTCAAAGGCAAGTCGCTCAGCAAAATAGGTT
TATGTTGCAGAGGTGCGCCAGGAGACGAAACCGATCGCCGCTTAACCCGT
CGGAATTGCACCGGGAGAAGGAGGAGAGGGAGGAGTTGAAGCAGTGTACC
TTTGCGCCTACTTTTTACACCAAGGCCCACCGCCAGGAGACGAAACCGAT
CGCCGCTTAACCCGTCGGAATTGCACCGGGAGAAGGAGGAGAGGGAGGAG
TTGAAGCAGTGTACCTTTGCGCCTACTTTTTACACCAAGGCCCACCGC
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