mRNA_M-pyrifera_M_contig104322.918.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104322.918.1
Unique NamemRNA_M-pyrifera_M_contig104322.918.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A3D5DDN0_9GAMM (Salicylate 1-monooxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DDN0_9GAMM)

HSP 1 Score: 233 bits (593), Expect = 6.340e-75
Identity = 115/153 (75.16%), Postives = 128/153 (83.66%), Query Frame = 1
Query:    1 RGELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAA-VALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDDIASRG 456
            RGELLNYVALTEE  W+TE+WTT ADK  LA +F DWNPTV+ +IDHTQE QCYKWALL+R+PL +WSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAH LA H      ALKAYE+AR+ERT  +Q AAW+QGQLNHA G G DI+ RG
Sbjct:   78 RGELLNYVALTEEAGWKTESWTTRADKSDLAAQFQDWNPTVQTIIDHTQEGQCYKWALLMREPLSTWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHYLAAHPTTPDFALKAYEEARIERTGKIQIAAWEQGQLNHAVGRGGDISERG 230          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A523NZJ0_9PROT (Monooxygenase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NZJ0_9PROT)

HSP 1 Score: 206 bits (524), Expect = 1.250e-62
Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 1
Query:    1 RGELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDD 441
            RGEL+NYVAL EED W+ E+WTT ADK   A+ F  WN  VRAL+D T + +CYKWALLVRDPLP+WS+ R TLLGDAAHPMVPYLAQG+ MA+EDAWVLA  + + A+ A AL+ YEQARLERT  +Q A+W+QGQLNHA G  DD
Sbjct:  227 RGELINYVALIEEDGWQGESWTTKADKEVFARNFKGWNEIVRALVDLTLQGECYKWALLVRDPLPTWSTKRVTLLGDAAHPMVPYLAQGAAMAVEDAWVLAACIERGANCATALRNYEQARLERTTKMQAASWEQGQLNHAVGRSDD 373          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A7Y4WQQ3_9PROT (Monooxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4WQQ3_9PROT)

HSP 1 Score: 144 bits (363), Expect = 9.950e-39
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    1 RGELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDDIASRG 456
            RGE +N+V + E D W+ E+WT   DK  L   F  W   V ++I+  Q   CY+WAL  RDPL  W   R TLLGDA HPM+P+LAQG+VM+IEDAWVL+  L +  D   ALKAYE AR  RT+ VQR A  Q  L H  G G  +A+ G
Sbjct:  217 RGERVNFVGVVERDGWQGESWTERGDKADLTADFKGWAKPVTSIIE--QATDCYRWALFDRDPLEEWCRGRVTLLGDACHPMLPFLAQGAVMSIEDAWVLSRQLKKTTDIPAALKAYEAARKPRTSKVQRGARSQMGLYHKRGLGAQLATFG 366          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A2D8XHS8_9HYPH (Monooxygenase n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D8XHS8_9HYPH)

HSP 1 Score: 143 bits (360), Expect = 3.140e-38
Identity = 74/151 (49.01%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    4 GELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDDIASRG 456
            GEL+N+V + E + W+ E W    +   L Q F+ W  TV  LID   E  C+KWAL  RDPLPSWS  R TLLGDA HPM+P++AQG+ MAIEDAWVLA  L +  D A A  AYE  R +RTA VQ AA    +  H       +A+ G
Sbjct:  222 GELVNFVGVVEREGWQVEGWLETGEISELKQDFAPWCSTVHQLIDAADETTCFKWALFDRDPLPSWSKGRVTLLGDACHPMLPFMAQGACMAIEDAWVLATELGESDDPARAFLAYEVQRKKRTARVQMAARANAKRFHKGAPAGQLATYG 372          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A355T193_9HYPH (FAD-binding monooxygenase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A355T193_9HYPH)

HSP 1 Score: 143 bits (360), Expect = 3.140e-38
Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    4 GELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAA 396
            GEL+N+V + E ++W+ E W    D   L Q F+ W  T+  LID   E  C+KWAL  RDPLPSWS  R TLLGDA HPM+P++AQG+ MAIEDAWVLA  LA+  D A A   YE  R +RTA VQ AA
Sbjct:  222 GELVNFVGVVEREDWQVEGWLESGDISELKQDFAPWCSTIHQLIDAADETTCFKWALFDRDPLPSWSKGRVTLLGDACHPMLPFMAQGACMAIEDAWVLAAELAKAEDPAQAFLRYEAQRKKRTARVQMAA 352          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A2Z4UPU8_9HYPH (3-hydroxybenzoate 6-hydroxylase 1 n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UPU8_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 9.230e-37
Identity = 71/151 (47.02%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    4 GELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDDIASRG 456
            GEL+N+V + E ++W+ E W    +   L + F+ W  T+  LID   E  C+KWAL  R+PLPSWS  R TLLGDA HPM+P++AQG+ MAIEDAWVLA  L +  + A A  AYE  R +RTA VQ AA    +  H       IA+ G
Sbjct:  222 GELVNFVGVVEREDWQVEGWLESGEISELKRDFAPWCSTIHQLIDAADETTCFKWALFDREPLPSWSKGRATLLGDACHPMLPFMAQGACMAIEDAWVLASELGKADNPAQAFLAYEAQRKKRTARVQMAARANAKRFHKGAPAGQIATYG 372          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A556B2F9_9BURK (FAD_binding_3 domain-containing protein n=1 Tax=Verticiella sediminum TaxID=1247510 RepID=A0A556B2F9_9BURK)

HSP 1 Score: 135 bits (340), Expect = 2.700e-35
Identity = 77/144 (53.47%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   10 LLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHT-QEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGD 438
            LLN VA+ E D W  E+WT PA    L   F  WN   R+L+D   +  QC +WAL  RDPL +W   R TLLGDAAHPM+P+LAQG+VMAIEDA VLA  LA  AD A AL+ YE AR+ RT+ +Q AA  QG+  H +G+ D
Sbjct:  222 LLNIVAVYETDRWTDESWTQPAQVAELVDCFRGWN---RSLLDVLGRAGQCNRWALYDRDPLSAWGRGRITLLGDAAHPMLPFLAQGAVMAIEDACVLADALATQADTAQALRRYESARVGRTSRLQLAARAQGESMHRSGALD 362          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A2A4S284_9HYPH (Monooxygenase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S284_9HYPH)

HSP 1 Score: 135 bits (339), Expect = 3.710e-35
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    4 GELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAV-ALKAYEQARLERTANVQ 387
            GEL+N V + E  +W+ E+WTTP  K  L + F+ W   ++ L+   + D C+KWAL  RDP+ +WS  R +LLGDA HP +P+LAQG+VMAIEDA+VLA  LAQ  DA   AL++Y+ AR++RTA VQ
Sbjct:  218 GELINIVGVREARDWQNESWTTPGSKQELLKDFAPWCADIQELLHAVENDTCFKWALHDRDPMKNWSKGRVSLLGDACHPTLPFLAQGAVMAIEDAYVLARCLAQSPDAPQQALQSYQSARMKRTAKVQ 346          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A257KXE3_9BRAD (Monooxygenase n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KXE3_9BRAD)

HSP 1 Score: 135 bits (339), Expect = 3.710e-35
Identity = 70/125 (56.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 RGELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERT 375
            RG L+N+V + E  +W  E+WTTP     +   F  WN  V+ LI+     Q Y WAL +R PLP WS  R TLLGDA HPMVP+LAQG+VMAIED +VLA  L  H D A ALKAYE ARLERT
Sbjct:  222 RGALMNFVGIVERTDWTEESWTTPGSHDDMRADFVGWNDDVQQLINAIP--QPYLWALKLRKPLPRWSEGRITLLGDACHPMVPFLAQGAVMAIEDGYVLARALDAHTDIAEALKAYESARLERT 344          
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Match: A0A4Q7NNF3_9BURK (Salicylate hydroxylase n=2 Tax=Pigmentiphaga kullae TaxID=151784 RepID=A0A4Q7NNF3_9BURK)

HSP 1 Score: 134 bits (336), Expect = 1.230e-34
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    4 GELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQEDQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVLAHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNH 420
            G+L+N++A+ + D+W  E+W+  AD+  LA+R++DW+P + A+ +      C KWAL  RDP+  WS  R TLLGDAAHPM+PYLAQG+ MA+ED  VLA  + +  D   AL+ YE+ RL RT   Q  A  + + NH
Sbjct:  232 GKLMNFIAIHQADDWSAESWSFDADREELARRYADWHPALAAMFERATA--CSKWALFDRDPMSRWSEGRVTLLGDAAHPMLPYLAQGAAMAMEDGIVLAKLITREVDIVPALQRYEKIRLPRTTRTQLGARARAKQNH 368          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104322.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DDN0_9GAMM6.340e-7575.16Salicylate 1-monooxygenase n=1 Tax=Gammaproteobact... [more]
A0A523NZJ0_9PROT1.250e-6266.67Monooxygenase n=2 Tax=Proteobacteria bacterium Tax... [more]
A0A7Y4WQQ3_9PROT9.950e-3950.00Monooxygenase n=1 Tax=Alphaproteobacteria bacteriu... [more]
A0A2D8XHS8_9HYPH3.140e-3849.01Monooxygenase n=1 Tax=Parvibaculum sp. TaxID=20248... [more]
A0A355T193_9HYPH3.140e-3854.20FAD-binding monooxygenase n=1 Tax=Rhodobiaceae bac... [more]
A0A2Z4UPU8_9HYPH9.230e-3747.023-hydroxybenzoate 6-hydroxylase 1 n=1 Tax=Rhodobia... [more]
A0A556B2F9_9BURK2.700e-3553.47FAD_binding_3 domain-containing protein n=1 Tax=Ve... [more]
A0A2A4S284_9HYPH3.710e-3551.16Monooxygenase n=1 Tax=Rhodobiaceae bacterium TaxID... [more]
A0A257KXE3_9BRAD3.710e-3556.00Monooxygenase n=1 Tax=Bradyrhizobiaceae bacterium ... [more]
A0A4Q7NNF3_9BURK1.230e-3446.04Salicylate hydroxylase n=2 Tax=Pigmentiphaga kulla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104322contigM-pyrifera_M_contig104322:189..644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.8
Seed ortholog evalue3.2e-32
Seed eggNOG ortholog1282876.BAOK01000001_gene3307
Preferred namenagX
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding domain
EggNOG OGs1MWWT@1224,2TRZP@28211,4BQRX@82117,COG0654@1,COG0654@2
EC1.14.13.1
COG Functional cat.CH
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.5802767-CDS-M-pyrifera_M_contig104322:188..6441622815549.5802767-CDS-M-pyrifera_M_contig104322:188..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104322 189..644 -
1692277459.1982415-CDS-M-pyrifera_M_contig104322:188..6441692277459.1982415-CDS-M-pyrifera_M_contig104322:188..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104322 189..644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104322.918.1prot_M-pyrifera_M_contig104322.918.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104322 189..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104322.918.1

>prot_M-pyrifera_M_contig104322.918.1 ID=prot_M-pyrifera_M_contig104322.918.1|Name=mRNA_M-pyrifera_M_contig104322.918.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
RGELLNYVALTEEDNWETENWTTPADKHTLAQRFSDWNPTVRALIDHTQE
DQCYKWALLVRDPLPSWSSARTTLLGDAAHPMVPYLAQGSVMAIEDAWVL
AHTLAQHADAAVALKAYEQARLERTANVQRAAWKQGQLNHAAGSGDDIAS
RG
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mRNA from alignment at M-pyrifera_M_contig104322:189..644-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104322.918.1 ID=mRNA_M-pyrifera_M_contig104322.918.1|Name=mRNA_M-pyrifera_M_contig104322.918.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig104322:189..644- (Macrocystis pyrifera P11B4 male)
CGCGGTGAATTGCTGAACTATGTCGCACTGACCGAGGAAGATAACTGGGA AACGGAAAACTGGACGACACCGGCGGACAAGCACACGCTCGCGCAGCGCT TCAGCGACTGGAACCCGACGGTCCGCGCCCTGATCGACCACACCCAGGAA GATCAATGTTACAAGTGGGCGCTGCTCGTGCGTGATCCGCTGCCGTCGTG GTCATCCGCGCGCACGACGCTGCTCGGCGATGCCGCGCACCCGATGGTGC CTTATCTCGCCCAGGGTTCGGTCATGGCGATCGAGGACGCGTGGGTACTC GCGCATACACTCGCGCAGCATGCCGATGCTGCCGTCGCGCTCAAAGCCTA CGAACAGGCGCGCCTCGAACGCACGGCGAACGTCCAGCGTGCGGCCTGGA AACAGGGTCAGCTGAACCACGCCGCCGGCAGTGGTGACGATATCGCATCG CGTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104322:189..644-

>mRNA_M-pyrifera_M_contig104322.918.1 ID=mRNA_M-pyrifera_M_contig104322.918.1|Name=mRNA_M-pyrifera_M_contig104322.918.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig104322:189..644- (Macrocystis pyrifera P11B4 male)
CGCGGTGAATTGCTGAACTATGTCGCACTGACCGAGGAAGATAACTGGGA
AACGGAAAACTGGACGACACCGGCGGACAAGCACACGCTCGCGCAGCGCT
TCAGCGACTGGAACCCGACGGTCCGCGCCCTGATCGACCACACCCAGGAA
GATCAATGTTACAAGTGGGCGCTGCTCGTGCGTGATCCGCTGCCGTCGTG
GTCATCCGCGCGCACGACGCTGCTCGGCGATGCCGCGCACCCGATGGTGC
CTTATCTCGCCCAGGGTTCGGTCATGGCGATCGAGGACGCGTGGGTACTC
GCGCATACACTCGCGCAGCATGCCGATGCTGCCGTCGCGCTCAAAGCCTA
CGAACAGGCGCGCCTCGAACGCACGGCGAACGTCCAGCGTGCGGCCTGGA
AACAGGGTCAGCTGAACCACGCCGCCGGCAGTGGTGACGATATCGCATCG
CGTGGCCGCGGTGAATTGCTGAACTATGTCGCACTGACCGAGGAAGATAA
CTGGGAAACGGAAAACTGGACGACACCGGCGGACAAGCACACGCTCGCGC
AGCGCTTCAGCGACTGGAACCCGACGGTCCGCGCCCTGATCGACCACACC
CAGGAAGATCAATGTTACAAGTGGGCGCTGCTCGTGCGTGATCCGCTGCC
GTCGTGGTCATCCGCGCGCACGACGCTGCTCGGCGATGCCGCGCACCCGA
TGGTGCCTTATCTCGCCCAGGGTTCGGTCATGGCGATCGAGGACGCGTGG
GTACTCGCGCATACACTCGCGCAGCATGCCGATGCTGCCGTCGCGCTCAA
AGCCTACGAACAGGCGCGCCTCGAACGCACGGCGAACGTCCAGCGTGCGG
CCTGGAAACAGGGTCAGCTGAACCACGCCGCCGGCAGTGGTGACGATATC
GCATCGCGTGGC
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