mRNA_M-pyrifera_M_contig104073.871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104073.871.1
Unique NamemRNA_M-pyrifera_M_contig104073.871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A4P9ZZA8_9FUNG (EXS family-domain-containing protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZZA8_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 1.130e-13
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   10 YRRFQWNIIRMENEHVNNCGRFRAVADVPLPYD 108
            YRRFQWNI RMENEHVNNCG+FRA  D+PLPYD
Sbjct:  323 YRRFQWNIFRMENEHVNNCGQFRATKDIPLPYD 355
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A2G4SY43_RHIZD (EXS domain-containing protein (Fragment) n=1 Tax=Rhizopus microsporus ATCC 52813 TaxID=1340429 RepID=A0A2G4SY43_RHIZD)

HSP 1 Score: 64.3 bits (155), Expect = 1.940e-11
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LTSYRRFQWNIIRMENEHVNNCGRFRAVADVPLPY 105
            L  YRRFQWN  R+ENEH+NNCG FRA+ ++PLP+
Sbjct:   81 LEVYRRFQWNFFRLENEHINNCGNFRAIKEIPLPF 115
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A4P9XTL7_9FUNG (EXS family-domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XTL7_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.950e-11
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 RRFQWNIIRMENEHVNNCGRFRAVADVPLPY 105
            RRFQWN  RMENEHVNNCG FRA+ ++PLP+
Sbjct:   90 RRFQWNFFRMENEHVNNCGMFRAIREIPLPF 120
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A1Y2FNJ8_9FUNG (EXS domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FNJ8_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 3.730e-11
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 LTSYRRFQWNIIRMENEHVNNCGRFRAVADVPLPYD 108
            L ++RRFQWN  RMENEH NNCG FRAV ++PLPY+
Sbjct:    2 LWNHRRFQWNFFRMENEHTNNCGEFRAVKEMPLPYN 37
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A8H7PUH4_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PUH4_MORIS)

HSP 1 Score: 64.3 bits (155), Expect = 5.060e-11
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 LTSYRRFQWNIIRMENEHVNNCGRFRAVADVPLPY 105
            L  YRRFQWN  R+ENEH+NNCG+FRA+ ++PLP+
Sbjct:  696 LECYRRFQWNFFRLENEHLNNCGQFRAIKEIPLPF 730
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A367JF66_RHIAZ (Uncharacterized protein n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367JF66_RHIAZ)

HSP 1 Score: 64.3 bits (155), Expect = 5.060e-11
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LTSYRRFQWNIIRMENEHVNNCGRFRAVADVPLPY 105
            L  YRRFQWN  R+ENEH+NNCG FRA+ ++PLP+
Sbjct:  690 LEVYRRFQWNFFRLENEHINNCGNFRAIKEIPLPF 724
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A1Y2AH53_9FUNG (EXS-domain-containing protein (Fragment) n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AH53_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 7.670e-11
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   10 YRRFQWNIIRMENEHVNNCGRFRAVADVPLPYD 108
            +RRFQWN  RMENEH NNCG FRAV ++PLPY+
Sbjct:  215 FRRFQWNFFRMENEHTNNCGDFRAVKEMPLPYN 247
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: A0A1Y1WR62_9FUNG (EXS-domain-containing protein (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WR62_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 9.530e-11
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   10 YRRFQWNIIRMENEHVNNCGRFRAVADVPLPY 105
            +RRFQWN  RMENEH NNCG FRAV ++PLPY
Sbjct:  181 FRRFQWNFFRMENEHTNNCGEFRAVKEMPLPY 212
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: UPI000644ED61 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644ED61)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-10
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   13 RRFQWNIIRMENEHVNNCGRFRAVADVPLPYD 108
            RR QWN+ R+ENEH+NNCGRFRA  D+PLPY+
Sbjct:  853 RRGQWNVYRLENEHINNCGRFRATRDIPLPYE 884
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BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Match: D3B217_POLPP (SPX domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B217_POLPP)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-10
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   13 RRFQWNIIRMENEHVNNCGRFRAVADVPLPYD 108
            RR QWN+ R+ENEH+NNCGRFRA  D+PLPY+
Sbjct:  850 RRGQWNVYRLENEHINNCGRFRATRDIPLPYE 881
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104073.871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9ZZA8_9FUNG1.130e-1384.85EXS family-domain-containing protein (Fragment) n=... [more]
A0A2G4SY43_RHIZD1.940e-1165.71EXS domain-containing protein (Fragment) n=1 Tax=R... [more]
A0A4P9XTL7_9FUNG1.950e-1174.19EXS family-domain-containing protein (Fragment) n=... [more]
A0A1Y2FNJ8_9FUNG3.730e-1169.44EXS domain-containing protein n=1 Tax=Neocallimast... [more]
A0A8H7PUH4_MORIS5.060e-1165.71Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A367JF66_RHIAZ5.060e-1165.71Uncharacterized protein n=1 Tax=Rhizopus azygospor... [more]
A0A1Y2AH53_9FUNG7.670e-1172.73EXS-domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A1Y1WR62_9FUNG9.530e-1175.00EXS-domain-containing protein (Fragment) n=1 Tax=A... [more]
UPI000644ED611.290e-1071.88hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B217_POLPP1.290e-1071.88SPX domain-containing protein n=1 Tax=Polysphondyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104073contigM-pyrifera_M_contig104073:481..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.1
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog36080.S2JJ85
Preferred nameSYG1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016021,GO:0023051,GO:0023052,GO:0031090,GO:0031224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944,GO:0098588,GO:0098805,GO:0098852
EggNOG free text desc.EXS family
EggNOG OGs1GSPR@112252,38FWU@33154,3NTYU@4751,COG5409@1,KOG1162@2759
COG Functional cat.U
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.157448-CDS-M-pyrifera_M_contig104073:480..5881622815547.157448-CDS-M-pyrifera_M_contig104073:480..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104073 481..588 -
1692277458.2526536-CDS-M-pyrifera_M_contig104073:480..5881692277458.2526536-CDS-M-pyrifera_M_contig104073:480..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104073 481..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104073.871.1prot_M-pyrifera_M_contig104073.871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104073 481..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104073.871.1

>prot_M-pyrifera_M_contig104073.871.1 ID=prot_M-pyrifera_M_contig104073.871.1|Name=mRNA_M-pyrifera_M_contig104073.871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
LTSYRRFQWNIIRMENEHVNNCGRFRAVADVPLPYD
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mRNA from alignment at M-pyrifera_M_contig104073:481..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104073.871.1 ID=mRNA_M-pyrifera_M_contig104073.871.1|Name=mRNA_M-pyrifera_M_contig104073.871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig104073:481..588- (Macrocystis pyrifera P11B4 male)
CTAACATCGTACAGACGATTCCAGTGGAATATCATCCGAATGGAGAACGA
GCACGTGAATAACTGCGGTCGTTTCCGTGCGGTCGCTGACGTGCCTTTGC
CCTACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104073:481..588-

>mRNA_M-pyrifera_M_contig104073.871.1 ID=mRNA_M-pyrifera_M_contig104073.871.1|Name=mRNA_M-pyrifera_M_contig104073.871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig104073:481..588- (Macrocystis pyrifera P11B4 male)
CTAACATCGTACAGACGATTCCAGTGGAATATCATCCGAATGGAGAACGA
GCACGTGAATAACTGCGGTCGTTTCCGTGCGGTCGCTGACGTGCCTTTGC
CCTACGACCTAACATCGTACAGACGATTCCAGTGGAATATCATCCGAATG
GAGAACGAGCACGTGAATAACTGCGGTCGTTTCCGTGCGGTCGCTGACGT
GCCTTTGCCCTACGAC
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