mRNA_M-pyrifera_M_contig103876.829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103876.829.1
Unique NamemRNA_M-pyrifera_M_contig103876.829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A2E7KHF9_9PLAN (Thioredoxin n=7 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHF9_9PLAN)

HSP 1 Score: 257 bits (657), Expect = 2.580e-84
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY
Sbjct:  146 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 287          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A517RBD6_9PLAN (Thioredoxin C-1 n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RBD6_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 5.040e-72
Identity = 123/142 (86.62%), Postives = 130/142 (91.55%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            DP+ND IKLR+ AVL K SRFDEC QII+ELE RGFLEPEAEQ+KSQLELQAAADEAGG E AR ALEADP+N DLKIALADALAISNKHEEALEICL+II +DKAGAGVEAKATMLRIFDLLGPQSALTS YRRKLATLLY
Sbjct:  146 DPQNDVIKLRMGAVLAKQSRFDECSQIIQELEKRGFLEPEAEQLKSQLELQAAADEAGGAEAARAALEADPENPDLKIALADALAISNKHEEALEICLSIIEQDKAGAGVEAKATMLRIFDLLGPQSALTSTYRRKLATLLY 287          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A2E2C6H5_9PLAN (Thioredoxin n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C6H5_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 6.210e-68
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            +PKNDTI+LRLAAVL K SRFDE  Q+I+ELE RGFLEPEAEQIKSQLELQAAA+EAGGV+ AR ALEADPDNA LKI LADALAISNKHEEALEICL+II +DKAGAGVEAKATMLRIFD+LGPQS L S YRR+L+TLLY
Sbjct:  146 EPKNDTIQLRLAAVLAKQSRFDESSQMIQELEKRGFLEPEAEQIKSQLELQAAAEEAGGVDAARAALEADPDNAALKIGLADALAISNKHEEALEICLSIIEQDKAGAGVEAKATMLRIFDILGPQSTLVSTYRRRLSTLLY 287          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A517X2L0_9PLAN (Thioredoxin n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X2L0_9PLAN)

HSP 1 Score: 205 bits (521), Expect = 1.080e-63
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            +P ND +KLR+AAVL K SRF+EC  II ELEARGFLEPEAEQIKSQLELQAAADEAGGVEEAR  L ADP+NA LKIALADALAI+NKH EALEICL+II +DK GAGVEAK T L+IFD+LGPQS L S YR+KLATLLY
Sbjct:  146 EPDNDVLKLRIAAVLAKQSRFEECATIINELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARATLAADPENATLKIALADALAIANKHGEALEICLSIIEQDKTGAGVEAKDTALKIFDVLGPQSTLASTYRKKLATLLY 287          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A3B1DIL0_9ZZZZ (FIG000875: Thioredoxin domain-containing protein EC-YbbN n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DIL0_9ZZZZ)

HSP 1 Score: 160 bits (405), Expect = 3.370e-46
Identity = 87/142 (61.27%), Postives = 113/142 (79.58%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            +P  D IK+RLA V++  +R DE  +II +LE RG+LEPEAE +KSQLEL+A A EAGGVEEAR A+ A+P+N  L++ LADALA++NKH EALE C+ +I +DK+G G +AK TM++IFD+LGPQS L S +RRKLATLLY
Sbjct:  145 EPDVDAIKVRLAIVILAQNRDDEAREIITKLEERGYLEPEAEVVKSQLELRATAAEAGGVEEARAAVAANPENLSLQLILADALAVANKHREALEKCIELIQKDKSGIGQDAKETMVKIFDMLGPQSQLVSEFRRKLATLLY 286          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A2E7CY54_9PLAN (Thioredoxin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CY54_9PLAN)

HSP 1 Score: 154 bits (390), Expect = 6.050e-44
Identity = 88/142 (61.97%), Postives = 111/142 (78.17%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            +P + +I++ LA + V+  R +EC  IIE LE+RGFLEPEAE IKS+LEL +AA+EAG VEEAR+A EA PD+   +I LA+AL  S +HEEAL+ICLA++ +DKAGAGV+AKATMLRIFD LG  S L S YRRKL+T LY
Sbjct:  146 EPSDSSIQIALARITVEQGRDEECRAIIEALESRGFLEPEAEAIKSRLELSSAAEEAGDVEEARRAAEAAPDDLSKQIQLAEALVGSRRHEEALQICLAVVQQDKAGAGVDAKATMLRIFDALGA-SPLVSQYRRKLSTALY 286          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A7W0M9R7_9PLAN (Thioredoxin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M9R7_9PLAN)

HSP 1 Score: 151 bits (382), Expect = 9.620e-43
Identity = 83/142 (58.45%), Postives = 106/142 (74.65%), Query Frame = 1
Query:    1 DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            +P  D IK+ LA  L+ + R  E   +IEEL  RGFLEPEAEQ+KSQLEL+AAA + GG+++ARKA  ADP N  L+I LADALA+  +H+EAL++ L +I +D+ G G EA+ATM++IFDLLGPQ  L S YRRKLAT LY
Sbjct:  145 EPGADRIKIALARALLAVERDAEAASLIEELATRGFLEPEAEQLKSQLELRAAAADTGGIDQARKAAAADPSNLSLQIRLADALAVGRQHQEALDLLLDVIRKDRTGYGDEARATMVKIFDLLGPQHELVSEYRRKLATALY 286          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: UPI000299D669 (thioredoxin n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI000299D669)

HSP 1 Score: 148 bits (374), Expect = 1.530e-41
Identity = 82/141 (58.16%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    4 PKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            P  D +K+ LA V++K  R DEC  I+E LE RGFLEPEAE++KS+L+++  A E+GGVEEARK  EADP N   +I LA+A A S +H +ALEICL I+ +D   A  EAK+TM++IFD+LGP S LTS YRRKLAT LY
Sbjct:  146 PDEDGLKILLAGVILKQGRLDECATILEALEQRGFLEPEAERLKSELDVRRTAAESGGVEEARKVAEADPTNLIAQIHLAEAYAASQQHRKALEICLEIVQKDFGEARAEAKSTMVKIFDMLGPGSELTSEYRRKLATALY 286          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: A0A3L7PFZ0_9BACT (Thioredoxin n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PFZ0_9BACT)

HSP 1 Score: 148 bits (374), Expect = 2.220e-41
Identity = 81/141 (57.45%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    4 PKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            P  D +K+ LA+VL+K  R DECG +I  LE RGFLEP+AE+IKS+LEL+ A+ E+GGVEEARK  EADP N  L++ +ADALA S++H +ALE+CL I+ +D   A   AK TM+ IF +LGP S LTS +RRKL+T LY
Sbjct:  161 PDQDPLKICLASVLLKQGRLDECGSLIAALEQRGFLEPDAERIKSELELRVASAESGGVEEARKTAEADPTNLVLQVRVADALAASSQHRKALELCLEIVQQDFGDARTAAKDTMVNIFSILGPASELTSEFRRKLSTALY 301          
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Match: UPI0019AC86B2 (Tetratricopeptide repeat protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019AC86B2)

HSP 1 Score: 144 bits (362), Expect = 2.370e-41
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    4 PKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLELQAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAIIAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY 426
            P+ D++K+ LA+VL+K  RFDEC   ++ L  RGFLEPEAE+IKS+LE++ AA E+GGV+EARK  EADP N  L++ LADALA S +H +ALE+CL ++ +D   A  EAK TM++IF +LGP S LT  +RRKL+T LY
Sbjct:   13 PEEDSLKVCLASVLLKQGRFDECQSQLDVLAQRGFLEPEAERIKSELEVRVAAAESGGVDEARKVAEADPANLVLQVRLADALAASAQHRKALELCLDVVLKDFGDARNEAKETMVKIFSILGPASELTGEFRRKLSTALY 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103876.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KHF9_9PLAN2.580e-84100.00Thioredoxin n=7 Tax=Gimesia TaxID=1649453 RepID=A0... [more]
A0A517RBD6_9PLAN5.040e-7286.62Thioredoxin C-1 n=2 Tax=Gimesia TaxID=1649453 RepI... [more]
A0A2E2C6H5_9PLAN6.210e-6883.10Thioredoxin n=10 Tax=Planctomycetaceae TaxID=126 R... [more]
A0A517X2L0_9PLAN1.080e-6378.87Thioredoxin n=2 Tax=Gimesia aquarii TaxID=2527964 ... [more]
A0A3B1DIL0_9ZZZZ3.370e-4661.27FIG000875: Thioredoxin domain-containing protein E... [more]
A0A2E7CY54_9PLAN6.050e-4461.97Thioredoxin n=1 Tax=Planctomycetaceae bacterium Ta... [more]
A0A7W0M9R7_9PLAN9.620e-4358.45Thioredoxin n=1 Tax=Planctomycetaceae bacterium Ta... [more]
UPI000299D6691.530e-4158.16thioredoxin n=1 Tax=Schlesneria paludicola TaxID=3... [more]
A0A3L7PFZ0_9BACT2.220e-4157.45Thioredoxin n=1 Tax=Planctomycetes bacterium TaxID... [more]
UPI0019AC86B22.370e-4156.03Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103876contigM-pyrifera_M_contig103876:220..648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score219.9
Seed ortholog evalue7.5e-55
Seed eggNOG ortholog344747.PM8797T_18214
KEGG koko:K05838
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thioredoxin domain-containing protein
EggNOG OGs2IZ48@203682,COG3118@1,COG3118@2
Ec32 ortholog descriptionthioredoxin-related protein
Ec32 orthologEc-02_006390.1
COG Functional cat.O
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.7952213-CDS-M-pyrifera_M_contig103876:219..6481622815544.7952213-CDS-M-pyrifera_M_contig103876:219..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103876 220..648 -
1692277457.083029-CDS-M-pyrifera_M_contig103876:219..6481692277457.083029-CDS-M-pyrifera_M_contig103876:219..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103876 220..648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103876.829.1prot_M-pyrifera_M_contig103876.829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103876 220..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103876.829.1

>prot_M-pyrifera_M_contig103876.829.1 ID=prot_M-pyrifera_M_contig103876.829.1|Name=mRNA_M-pyrifera_M_contig103876.829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
DPKNDTIKLRLAAVLVKLSRFDECGQIIEELEARGFLEPEAEQIKSQLEL
QAAADEAGGVEEARKALEADPDNADLKIALADALAISNKHEEALEICLAI
IAEDKAGAGVEAKATMLRIFDLLGPQSALTSAYRRKLATLLY*
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mRNA from alignment at M-pyrifera_M_contig103876:220..648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103876.829.1 ID=mRNA_M-pyrifera_M_contig103876.829.1|Name=mRNA_M-pyrifera_M_contig103876.829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig103876:220..648- (Macrocystis pyrifera P11B4 male)
GATCCGAAAAACGATACCATCAAACTGCGACTGGCAGCTGTGCTGGTAAA GTTGTCCCGCTTCGATGAATGCGGCCAGATCATTGAAGAACTGGAAGCTC GTGGGTTTCTAGAGCCCGAAGCAGAGCAGATTAAATCGCAGCTCGAACTT CAGGCAGCCGCGGATGAAGCGGGTGGGGTGGAAGAGGCTCGTAAAGCATT GGAGGCAGATCCCGATAATGCTGACCTCAAAATCGCCTTAGCAGACGCCC TGGCGATTTCCAACAAACATGAAGAAGCCCTGGAAATCTGTCTGGCGATC ATCGCGGAAGATAAAGCGGGAGCAGGCGTAGAAGCCAAAGCCACAATGTT GCGAATCTTCGATCTGCTGGGGCCACAGTCAGCCCTGACCAGCGCGTACC GTCGCAAGCTGGCGACTCTGCTCTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103876:220..648-

>mRNA_M-pyrifera_M_contig103876.829.1 ID=mRNA_M-pyrifera_M_contig103876.829.1|Name=mRNA_M-pyrifera_M_contig103876.829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig103876:220..648- (Macrocystis pyrifera P11B4 male)
GATCCGAAAAACGATACCATCAAACTGCGACTGGCAGCTGTGCTGGTAAA
GTTGTCCCGCTTCGATGAATGCGGCCAGATCATTGAAGAACTGGAAGCTC
GTGGGTTTCTAGAGCCCGAAGCAGAGCAGATTAAATCGCAGCTCGAACTT
CAGGCAGCCGCGGATGAAGCGGGTGGGGTGGAAGAGGCTCGTAAAGCATT
GGAGGCAGATCCCGATAATGCTGACCTCAAAATCGCCTTAGCAGACGCCC
TGGCGATTTCCAACAAACATGAAGAAGCCCTGGAAATCTGTCTGGCGATC
ATCGCGGAAGATAAAGCGGGAGCAGGCGTAGAAGCCAAAGCCACAATGTT
GCGAATCTTCGATCTGCTGGGGCCACAGTCAGCCCTGACCAGCGCGTACC
GTCGCAAGCTGGCGACTCTGCTCTATTAAGATCCGAAAAACGATACCATC
AAACTGCGACTGGCAGCTGTGCTGGTAAAGTTGTCCCGCTTCGATGAATG
CGGCCAGATCATTGAAGAACTGGAAGCTCGTGGGTTTCTAGAGCCCGAAG
CAGAGCAGATTAAATCGCAGCTCGAACTTCAGGCAGCCGCGGATGAAGCG
GGTGGGGTGGAAGAGGCTCGTAAAGCATTGGAGGCAGATCCCGATAATGC
TGACCTCAAAATCGCCTTAGCAGACGCCCTGGCGATTTCCAACAAACATG
AAGAAGCCCTGGAAATCTGTCTGGCGATCATCGCGGAAGATAAAGCGGGA
GCAGGCGTAGAAGCCAAAGCCACAATGTTGCGAATCTTCGATCTGCTGGG
GCCACAGTCAGCCCTGACCAGCGCGTACCGTCGCAAGCTGGCGACTCTGC
TCTATTAA
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