mRNA_M-pyrifera_M_contig103875.826.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103875.826.1
Unique NamemRNA_M-pyrifera_M_contig103875.826.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A6N7FP60_9ACTN (Flagellar hook-associated protein 3 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FP60_9ACTN)

HSP 1 Score: 128 bits (321), Expect = 2.190e-33
Identity = 65/150 (43.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAVG--LDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G Y GD   +TR  G G+  +VNV G  +FGV +PGDP NG++F+ L +    + AG+ AA G  L+ I+     +  +QAT+G R   LE   SRN+   I++++ LSE ED+D A AI+++K +E AY AALSVT +++  +L+DFLR
Sbjct:  151 GEYQGDGAPITRAIGPGSEVQVNVSGETVFGVRDPGDPANGDLFQVLEQAVADLRAGDVAAAGQGLERIDAAMDRIGVSQATLGTRARQLEAQASRNSSTTIDLKAGLSEVEDIDYAQAIIEVKTEEMAYQAALSVTAKVIQPTLIDFLR 300          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A5Q2RG02_9ACTN (Flagellar hook-associated protein 3 n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RG02_9ACTN)

HSP 1 Score: 115 bits (288), Expect = 1.560e-28
Identity = 63/150 (42.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGES--AAVGLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G YLG+ G V R      +  VN  GPE+FG     DP +GN+F+ L +IA  ++AG++  A+ GL+AI R    +  AQ  +G R   +E +  RNA+  +E++++LSE EDVD+A+ +++++ QE AY AALSVT +++  +LLDFLR
Sbjct:  150 GTYLGNEGQVQRNVAPDVSIRVNRTGPEVFGTA--ADP-DGNVFQVLEQIAAALDAGDTGAASAGLEAIGRAADRIERAQVEMGARSKQVEEIGFRNAEVDVELKASLSEVEDVDIAETLIEVRIQEMAYNAALSVTAKVIQPTLLDFLR 296          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A7X6SL82_9ACTN (Flagellin n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SL82_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 2.700e-26
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAV--GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G +LG+  +VT    +   + VN  GPE+FG  NP DP+NG++F+ +  IA  IEA + AAV  GL  I+     + GAQ  +G R   LE + S  AD  + + +A+S+ EDVD A+AI++ + + +AY A+L+V  +IL  SLLDFLR
Sbjct:  150 GNFLGNANSVTIPVLDAVQFRVNRTGPEVFGTPNPSDPINGDVFQLIDSIAASIEAVDPAAVANGLTQIDAALERISGAQVEMGTRHRQLEDVMSTIADQEVAVTTAISKKEDVDAAEAIMNYQTRLSAYEASLAVGSKILQPSLLDFLR 299          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: UPI001CC543D3 (flagellar hook-associated protein FlgL n=1 Tax=Nocardioides sp. TRM66260-LWL TaxID=2874478 RepID=UPI001CC543D3)

HSP 1 Score: 108 bits (269), Expect = 1.010e-25
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAV--GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            GAY+GD+G VTRT  +G    V+VPG ++ G      P   ++F+ L  ++  + AG+ A +  GL  +   +S +  AQATVG     +EG   +  DA++ +R+ LSE ED DL   ++DL+ Q+ AY AALS T +++  SL+DFLR
Sbjct:  154 GAYIGDSGQVTRTIADGVQVRVDVPGLDVIG------PNGASIFDDLANLSTALRAGDQAGMQTGLAKLSARQSAITTAQATVGAAYNRVEGASQKGKDALVALRTNLSEVEDADLPKTLVDLQMQQVAYQAALSATAKVMQPSLIDFLR 297          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: UPI001D0F4A99 (hypothetical protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D0F4A99)

HSP 1 Score: 107 bits (267), Expect = 2.020e-25
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAV--GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G Y GD G V R        +VN  G  +FG +    P++GN+F+ L  +A  +EAG+ AA+  G+  ++     +  AQ  +G R   ++ + +R+  A ++ R ALSE EDVD+A+AILDLKA+E  Y  ALS T ++   SLLDFLR
Sbjct:  150 GTYQGDGGVVRRPIAPAVDVQVNRSGTSVFGTQT-ATPMDGNVFQVLEALATAVEAGDDAAMATGITRVDTAIDRVESAQVELGARARQVDDVVARSETADLDRRQALSELEDVDIAEAILDLKAREVGYQVALSATAQVSKLSLLDFLR 298          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A0Q6UPY1_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. Root122 TaxID=1736431 RepID=A0A0Q6UPY1_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 1.720e-22
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    7 YLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAV--GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            Y GDT  V R   +G   +V V GP  FG  N GD    N+F+ L  +AD + AG+++A+  GL+A++   + L  A+  VG R   +E    R  D  + + +ALSE E+ DL  A++DLK QE AY A+L+ T R+L  SLLDFLR
Sbjct:  157 YAGDTNPVNRAVADGVAVDVAVSGPAAFG--NDGD----NVFDHLSALADAVRAGDTSAIASGLEALKDDGNRLIVARTDVGARTNRVEQAGIRAGDTELSLTNALSEIENTDLPRAMVDLKMQEVAYQASLAATARVLQPSLLDFLR 298          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A328LUP7_9BACI (Flagellin n=2 Tax=Terrabacteria group TaxID=1783272 RepID=A0A328LUP7_9BACI)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-22
Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    7 YLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAVGLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            Y GD   V R      T  V+  GP IFG +N  D    ++F  L+ IAD + +G   +  +DA+++  +T+   ++ VG R A L   +  NA+A++++ +  S  ED+DL+ A LD+K+QE +Y AALSVT ++L  +L+DFLR
Sbjct:  159 YTGDGSTVERRISPNTTIRVDANGPAIFGRDNT-DGKGDSVFGLLKTIADTLRSGGDVSAHIDAMDKALNTVINGRSEVGARHAQLLRAQDANANAVVDLENQRSGIEDLDLSKAFLDVKSQELSYQAALSVTAKVLQPTLMDFLR 303          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: UPI0015F8C971 (flagellar hook protein n=1 Tax=Nocardioides dongkuii TaxID=2760089 RepID=UPI0015F8C971)

HSP 1 Score: 99.0 bits (245), Expect = 3.200e-22
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAVG--LDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            GAY+G  G V RT  +G    V+V G ++ G      P   ++F+ L  ++D + AG+ A +G  LDA+      L   +A VG   + +E    + A+A + +  ALSE E+ DL  AI+DLK QE AY AAL+ TGR+L  SL+DFLR
Sbjct:  152 GAYVGTPGPVMRTVADGIRVRVDVDGTDLVG------PNGASLFDDLDALSDALRAGDDAGIGAGLDALGGRLEKLAAVRAQVGATQSRIEAASLKAANAELTLTQALSEVENTDLPRAIVDLKMQEVAYEAALAATGRVLQPSLVDFLR 295          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A6J4H1P5_9ACTN (Flagellar hook-associated protein FlgL n=1 Tax=uncultured Blastococcus sp. TaxID=217144 RepID=A0A6J4H1P5_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 3.650e-22
Identity = 58/155 (37.42%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRI--EAGESAAV-----GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G ++GDTG   RT   G   EVNV GP  F     GD  N  +FE LR ++ ++  +AG    V     GL  ++R    + GA  TVG R+  +E ++++  +  + + ++LSE E +DL   I++L+ QE AY +AL  T R++  SLLDFLR
Sbjct:  154 GGFVGDTGTAVRTVAAGTQVEVNVTGPAAF-----GDGTNAQVFEVLRGLSAQLRGQAGTPGGVTDLGDGLSKLDRATERIIGALGTVGARVNRVESMKAKAEEQRVTVTNSLSEVESIDLPKTIMELQMQEVAYKSALGATARVVQPSLLDFLR 303          
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Match: A0A1H1S4A1_9ACTN (Flagellin n=1 Tax=Marmoricola scoriae TaxID=642780 RepID=A0A1H1S4A1_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 4.550e-22
Identity = 59/150 (39.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    1 GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREIADRIEAGESAAV--GLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAIIEMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR 444
            G+Y+GD GAV RT G      V+V G  +FG           +F+ L  ++  + AG+ A V  G+ A+ R    +  ++A +G R A +E   S  A   +++RS+LS  ED DL + I+DLK QEAAY AAL  T R+L  SL+D+LR
Sbjct:  153 GSYVGDGGAVLRTVGPQEQVRVDVDGASVFGA------AGNTVFDHLTALSTALRAGDEAGVRTGIGALNRDLEQVTTSRAEMGTRQARVEAAVSATAARELDLRSSLSSVEDADLPETIIDLKLQEAAYQAALGATARVLQPSLMDYLR 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103875.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FP60_9ACTN2.190e-3343.33Flagellar hook-associated protein 3 n=1 Tax=Acidim... [more]
A0A5Q2RG02_9ACTN1.560e-2842.00Flagellar hook-associated protein 3 n=1 Tax=Actino... [more]
A0A7X6SL82_9ACTN2.700e-2642.00Flagellin n=1 Tax=Actinomycetia bacterium TaxID=18... [more]
UPI001CC543D31.010e-2539.33flagellar hook-associated protein FlgL n=1 Tax=Noc... [more]
UPI001D0F4A992.020e-2540.00hypothetical protein n=1 Tax=Aquihabitans sp. Kera... [more]
A0A0Q6UPY1_9ACTN1.720e-2241.89Uncharacterized protein n=1 Tax=Nocardioides sp. R... [more]
A0A328LUP7_9BACI1.860e-2237.67Flagellin n=2 Tax=Terrabacteria group TaxID=178327... [more]
UPI0015F8C9713.200e-2240.00flagellar hook protein n=1 Tax=Nocardioides dongku... [more]
A0A6J4H1P5_9ACTN3.650e-2237.42Flagellar hook-associated protein FlgL n=1 Tax=unc... [more]
A0A1H1S4A1_9ACTN4.550e-2239.33Flagellin n=1 Tax=Marmoricola scoriae TaxID=642780... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103875contigM-pyrifera_M_contig103875:5..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.2
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog543632.JOJL01000031_gene6111
Preferred nameflgL
KEGG koko:K02397
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464
EggNOG free text desc.Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
EggNOG OGs2IA40@201174,4DBM3@85008,COG1344@1,COG1344@2
COG Functional cat.N
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.6798182-CDS-M-pyrifera_M_contig103875:4..4511622815544.6798182-CDS-M-pyrifera_M_contig103875:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103875 5..451 +
1692277457.0401726-CDS-M-pyrifera_M_contig103875:4..4511692277457.0401726-CDS-M-pyrifera_M_contig103875:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103875 5..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103875.826.1prot_M-pyrifera_M_contig103875.826.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103875 5..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103875.826.1

>prot_M-pyrifera_M_contig103875.826.1 ID=prot_M-pyrifera_M_contig103875.826.1|Name=mRNA_M-pyrifera_M_contig103875.826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
GAYLGDTGAVTRTAGNGATYEVNVPGPEIFGVENPGDPLNGNMFEALREI
ADRIEAGESAAVGLDAIERTRSTLHGAQATVGIRLASLEGLESRNADAII
EMRSALSETEDVDLADAILDLKAQEAAYTAALSVTGRILDRSLLDFLR*
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mRNA from alignment at M-pyrifera_M_contig103875:5..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103875.826.1 ID=mRNA_M-pyrifera_M_contig103875.826.1|Name=mRNA_M-pyrifera_M_contig103875.826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig103875:5..451+ (Macrocystis pyrifera P11B4 male)
GGCGCCTATCTCGGCGACACAGGAGCGGTCACGCGAACCGCAGGGAACGG AGCTACCTACGAGGTGAACGTCCCGGGGCCCGAGATCTTCGGTGTCGAGA ACCCGGGCGATCCCCTCAACGGCAACATGTTCGAGGCACTGCGCGAGATC GCCGACCGCATCGAGGCCGGCGAATCGGCCGCCGTCGGGCTCGACGCCAT CGAACGCACCCGCTCGACGCTCCACGGAGCGCAGGCGACGGTAGGCATCC GCTTGGCCTCGCTCGAGGGGCTCGAGTCGCGCAACGCCGACGCCATCATC GAGATGCGCTCTGCGCTCAGCGAGACCGAAGACGTGGATCTCGCCGATGC CATCCTCGACCTGAAGGCACAAGAAGCGGCCTACACGGCAGCGCTCAGCG TGACCGGACGCATCCTCGACCGGTCGTTGTTGGACTTCCTGCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103875:5..451+

>mRNA_M-pyrifera_M_contig103875.826.1 ID=mRNA_M-pyrifera_M_contig103875.826.1|Name=mRNA_M-pyrifera_M_contig103875.826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig103875:5..451+ (Macrocystis pyrifera P11B4 male)
GGCGCCTATCTCGGCGACACAGGAGCGGTCACGCGAACCGCAGGGAACGG
AGCTACCTACGAGGTGAACGTCCCGGGGCCCGAGATCTTCGGTGTCGAGA
ACCCGGGCGATCCCCTCAACGGCAACATGTTCGAGGCACTGCGCGAGATC
GCCGACCGCATCGAGGCCGGCGAATCGGCCGCCGTCGGGCTCGACGCCAT
CGAACGCACCCGCTCGACGCTCCACGGAGCGCAGGCGACGGTAGGCATCC
GCTTGGCCTCGCTCGAGGGGCTCGAGTCGCGCAACGCCGACGCCATCATC
GAGATGCGCTCTGCGCTCAGCGAGACCGAAGACGTGGATCTCGCCGATGC
CATCCTCGACCTGAAGGCACAAGAAGCGGCCTACACGGCAGCGCTCAGCG
TGACCGGACGCATCCTCGACCGGTCGTTGTTGGACTTCCTGCGCTAGGGC
GCCTATCTCGGCGACACAGGAGCGGTCACGCGAACCGCAGGGAACGGAGC
TACCTACGAGGTGAACGTCCCGGGGCCCGAGATCTTCGGTGTCGAGAACC
CGGGCGATCCCCTCAACGGCAACATGTTCGAGGCACTGCGCGAGATCGCC
GACCGCATCGAGGCCGGCGAATCGGCCGCCGTCGGGCTCGACGCCATCGA
ACGCACCCGCTCGACGCTCCACGGAGCGCAGGCGACGGTAGGCATCCGCT
TGGCCTCGCTCGAGGGGCTCGAGTCGCGCAACGCCGACGCCATCATCGAG
ATGCGCTCTGCGCTCAGCGAGACCGAAGACGTGGATCTCGCCGATGCCAT
CCTCGACCTGAAGGCACAAGAAGCGGCCTACACGGCAGCGCTCAGCGTGA
CCGGACGCATCCTCGACCGGTCGTTGTTGGACTTCCTGCGCTAG
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