mRNA_M-pyrifera_M_contig103750.802.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103750.802.1
Unique NamemRNA_M-pyrifera_M_contig103750.802.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A6G2J8Y9_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=5 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6G2J8Y9_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 3.240e-32
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1
Query:   19 GLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSYT 261
             LR++YR PS+LVA+K VP +D  SARF+A SP  VLAT   +GTDASPRGGPPGFARVLDDG RLAF DL+GNNRLDSYT
Sbjct:   53 ALRQIYRQPSKLVANKNVPAIDAESARFLALSPLCVLATHGPDGTDASPRGGPPGFARVLDDGTRLAFGDLAGNNRLDSYT 133          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A349B2Y3_9ACTN (Putative_PNPOx domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B2Y3_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 2.190e-24
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    4 IPTLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSYT 261
            +P ++GLRE+YR P  LV  K +  VD A+  F+ ASPF+V+ATT   GTDASPRGG PGF  VLD+  RLA  DL+GNNRLD++T
Sbjct:    7 VPDVEGLRELYRQPHPLVLRKQIDHVDEAARAFVEASPFVVVATTGPAGTDASPRGGAPGFVAVLDE-HRLAIGDLAGNNRLDTHT 91          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A6C7E5K8_ILUCY (Putative_PNPOx domain-containing protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E5K8_ILUCY)

HSP 1 Score: 99.4 bits (246), Expect = 4.890e-24
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   19 GLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSY 258
             LR VYR P+Q V DKA   +D  +A FIA+SPF+VL+T+S + TDASPRGGPPGF RVLD  +RLA+ DL+GNNRLDS+
Sbjct:   12 ALRAVYREPTQTVYDKATDHIDGGAADFIASSPFVVLSTSSDDRTDASPRGGPPGFVRVLDR-QRLAWGDLTGNNRLDSF 90          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A7W0QJE5_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QJE5_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 1.470e-22
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 IPTLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDS 255
            I  ++ LR+ YR PS LV  K  P +D  + +FIAASP  V+ T  + G DASPRGGPPGF  VLDD  RLA+ADLSGNNRLDS
Sbjct:    7 ITDVEQLRQRYRSPSALVQRKESPILDDGACQFIAASPLFVMCTAGSRGADASPRGGPPGFVAVLDD-HRLAWADLSGNNRLDS 89          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: UPI000346246E (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI000346246E)

HSP 1 Score: 94.4 bits (233), Expect = 4.120e-22
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   22 LREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSY 258
            LR VYR P+Q V DK +  +D  +A FIA SPF+VLAT++    DASPRGGPPGF RVLD+  RLA+ DL+GNNRLDS+
Sbjct:   13 LRTVYREPAQGVLDKVIDHIDEGAAGFIARSPFVVLATSTDGRGDASPRGGPPGFVRVLDE-HRLAWGDLTGNNRLDSF 90          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A7W1LTJ7_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LTJ7_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 4.490e-22
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 IPTLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDS 255
            I  ++ LR+ YR PS LV  K  P +D  + +FIAASP  V+ T  + G DASPRGGPPGF  VLDD  RLA+ADLSGNNRLDS
Sbjct:    7 ITDVEQLRQRYRSPSALVQRKESPILDDGACQFIAASPLFVMCTAGSRGADASPRGGPPGFVAVLDD-HRLAWADLSGNNRLDS 89          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A7W1CN84_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CN84_9ACTN)

HSP 1 Score: 89.7 bits (221), Expect = 2.650e-20
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 TLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGT-DASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSY 258
            ++D LR +YRPP +   DK +  +D   A F+A SPF VL+T  A G  DASP+GGPPGF RVLD+  RLA+ D SGNNRLDS+
Sbjct:    5 SVDDLRGIYRPPGRGPVDKVIDRLDEHCADFLAKSPFFVLSTADATGVCDASPKGGPPGFVRVLDE-HRLAWPDYSGNNRLDSF 87          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A7V9B594_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B594_9ACTN)

HSP 1 Score: 89.7 bits (221), Expect = 2.820e-20
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   22 LREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGT-DASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSYT 261
            LR +YR P +++  K V  +D A+A FIA +PF +LAT  A+G  D SPRGGPPGF RVL DGRRLA  DLSGNN LDS T
Sbjct:   16 LRRLYRNPPEVLLKKKVERIDAATAAFIATAPFCLLATADADGRCDVSPRGGPPGFVRVL-DGRRLALPDLSGNNILDSLT 95          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: A0A5Q2RJK8_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RJK8_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 3.370e-20
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 IPTLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGTDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSYT 261
            I T + LRE Y    ++V  K V  +D  +  FIAASPF VLAT+S  GTDASPRGGPPGF  VLD+  R+AF DLSGN  LDS++
Sbjct:    7 ITTQEQLRERYGDTPEIVLRKIVDRIDDGARGFIAASPFFVLATSSPTGTDASPRGGPPGFVAVLDE-HRVAFGDLSGNRILDSFS 91          
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Match: UPI001FB7B05C (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Saccharopolyspora gregorii TaxID=33914 RepID=UPI001FB7B05C)

HSP 1 Score: 88.2 bits (217), Expect = 8.500e-20
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   22 LREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEGT-DASPRGGPPGFARVLDDGRRLAFADLSGNNRLDS 255
            LRE+ + P  ++A+KA+  VD  S RF+AASPF +LATTS++G+ D SPRG PPG   V DDGR L FAD  GN RLDS
Sbjct:   10 LRELVKEPHPMIAEKAIDRVDEESRRFLAASPFFLLATTSSDGSLDVSPRGDPPGSVLVEDDGRTLVFADRPGNRRLDS 88          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103750.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G2J8Y9_9ACTN3.240e-3272.84Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A349B2Y3_9ACTN2.190e-2458.14Putative_PNPOx domain-containing protein n=1 Tax=A... [more]
A0A6C7E5K8_ILUCY4.890e-2463.75Putative_PNPOx domain-containing protein n=1 Tax=I... [more]
A0A7W0QJE5_9ACTN1.470e-2259.52Pyridoxamine 5'-phosphate oxidase family protein (... [more]
UPI000346246E4.120e-2262.03pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A7W1LTJ7_9ACTN4.490e-2259.52Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A7W1CN84_9ACTN2.650e-2055.95Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A7V9B594_9ACTN2.820e-2060.49Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A5Q2RJK8_9ACTN3.370e-2056.98Pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI001FB7B05C8.500e-2058.23pyridoxamine 5'-phosphate oxidase family protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103750contigM-pyrifera_M_contig103750:1..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.1
Seed ortholog evalue5.2e-19
Seed eggNOG ortholog1313172.YM304_17930
Preferred nameMA20_21430
KEGG koko:K07006
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pyridoxamine 5-phosphate
EggNOG OGs2H5HQ@201174,COG3576@1,COG3576@2
COG Functional cat.L
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.6961007-CDS-M-pyrifera_M_contig103750:0..2611622815543.6961007-CDS-M-pyrifera_M_contig103750:0..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103750 1..261 -
1692277456.7331197-CDS-M-pyrifera_M_contig103750:0..2611692277456.7331197-CDS-M-pyrifera_M_contig103750:0..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103750 1..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103750.802.1prot_M-pyrifera_M_contig103750.802.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103750 1..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103750.802.1

>prot_M-pyrifera_M_contig103750.802.1 ID=prot_M-pyrifera_M_contig103750.802.1|Name=mRNA_M-pyrifera_M_contig103750.802.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MIPTLDGLREVYRPPSQLVADKAVPTVDPASARFIAASPFIVLATTSAEG
TDASPRGGPPGFARVLDDGRRLAFADLSGNNRLDSYT
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mRNA from alignment at M-pyrifera_M_contig103750:1..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103750.802.1 ID=mRNA_M-pyrifera_M_contig103750.802.1|Name=mRNA_M-pyrifera_M_contig103750.802.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig103750:1..261- (Macrocystis pyrifera P11B4 male)
ATGATCCCGACGCTCGATGGCTTGCGTGAGGTCTACCGACCGCCCTCCCA GCTCGTGGCCGACAAGGCGGTGCCCACCGTCGACCCGGCATCGGCTCGTT TCATCGCGGCGTCGCCCTTCATCGTGCTGGCGACCACCAGCGCCGAGGGG ACCGATGCCTCACCGCGTGGCGGCCCTCCCGGCTTCGCCCGCGTGCTCGA CGACGGCCGCCGACTCGCCTTTGCCGACCTCTCCGGCAACAACCGTCTCG ACTCCTACACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103750:1..261-

>mRNA_M-pyrifera_M_contig103750.802.1 ID=mRNA_M-pyrifera_M_contig103750.802.1|Name=mRNA_M-pyrifera_M_contig103750.802.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig103750:1..261- (Macrocystis pyrifera P11B4 male)
ATGATCCCGACGCTCGATGGCTTGCGTGAGGTCTACCGACCGCCCTCCCA
GCTCGTGGCCGACAAGGCGGTGCCCACCGTCGACCCGGCATCGGCTCGTT
TCATCGCGGCGTCGCCCTTCATCGTGCTGGCGACCACCAGCGCCGAGGGG
ACCGATGCCTCACCGCGTGGCGGCCCTCCCGGCTTCGCCCGCGTGCTCGA
CGACGGCCGCCGACTCGCCTTTGCCGACCTCTCCGGCAACAACCGTCTCG
ACTCCTACACGATGATCCCGACGCTCGATGGCTTGCGTGAGGTCTACCGA
CCGCCCTCCCAGCTCGTGGCCGACAAGGCGGTGCCCACCGTCGACCCGGC
ATCGGCTCGTTTCATCGCGGCGTCGCCCTTCATCGTGCTGGCGACCACCA
GCGCCGAGGGGACCGATGCCTCACCGCGTGGCGGCCCTCCCGGCTTCGCC
CGCGTGCTCGACGACGGCCGCCGACTCGCCTTTGCCGACCTCTCCGGCAA
CAACCGTCTCGACTCCTACACG
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