mRNA_M-pyrifera_M_contig103402.721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103402.721.1
Unique NamemRNA_M-pyrifera_M_contig103402.721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A7S1GVM4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GVM4_HEMAN)

HSP 1 Score: 90.9 bits (224), Expect = 7.450e-21
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   10 ESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSA-EYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVT 339
            E TW CP C +  R +K   +  AP  L+V LKRF H  S    K +  V FPLH L+L+P++   +PS   Y+L GV  H GS   GHYTA  K P  Q+W L +D SV+
Sbjct:   24 EDTWYCPKCKQHQRASKTMALWTAPSNLVVHLKRFSHEESWRREKLDTHVEFPLHGLDLSPYVRCPSPSPLVYDLCGVTNHFGSTHGGHYTAYCKSPVDQKWHLFDDSSVS 134          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A1G4KN19_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4KN19_9SACH)

HSP 1 Score: 92.0 bits (227), Expect = 1.750e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   25 CPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFL----VPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            CP+CG    P K+  I K PP+L++ LKRF HL +GT  K N  V FP + LN+TPF       T P   YELV V+ H GS+ +GHYT+  K P  + W+  ND  V  I
Sbjct:  325 CPNCGSIQNPIKQMTIAKLPPVLVLQLKRFEHLMTGTSVKLNDFVEFPAY-LNMTPFCHRDETRTMPDIVYELVAVISHEGSVNQGHYTSMCKIPGGK-WFRFNDSMVVSI 433          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A1G4IYY8_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lachancea dasiensis TaxID=1072105 RepID=A0A1G4IYY8_9SACH)

HSP 1 Score: 83.2 bits (204), Expect = 2.580e-16
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAE----YELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            ++C SC     P K+  I K PP++++ LKRF HL SGT  K N  V FP + LN+TP+    + S      YELV V+ H GS+ +GHYT+  K P  Q W+  ND  V  I
Sbjct:  323 YKCSSCESVRNPIKQMNIAKLPPVMVLQLKRFEHLMSGTSVKLNDPVHFPAY-LNMTPYCHQDSSSGMPVIIYELVAVISHEGSVNQGHYTSMCKIPGGQ-WFRFNDSMVVTI 433          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A0L0S8D5_ALLM3 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S8D5_ALLM3)

HSP 1 Score: 79.0 bits (193), Expect = 9.000e-15
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAP-SAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            + CP C ++ R +KR  + +APP+L+V LKRF  L +    K +  V FP+ HL+L+  +  TAP  A Y+LV VV+H GSL  GHYTA V++ +   W+  ND +V  +
Sbjct:  484 YHCPRCQRRERSSKRLQVHRAPPVLVVHLKRFASLRA----KLSVPVDFPVDHLDLS--VAATAPVPATYKLVAVVQHYGSLAMGHYTATVRR-SGDRWFKANDSTVLQV 586          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: E4XT03_OIKDI (USP domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XT03_OIKDI)

HSP 1 Score: 77.8 bits (190), Expect = 1.760e-14
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLY-----KNNRIVTFPLHHLNLTPFLVPTAPSAE-----YELVGVVKHVGSLQRGHYTAAVKQPTSQE---WWLCNDDSVTPI 345
            W C SC +     K+  + K P +L+  LKRFH+  S + Y     K N++V + + +L+++PF++    +       YEL GVV H+GS+  GHYTA VK P  ++   W L +D  V  +
Sbjct:  193 WYCGSCKEHVAAQKQLTLWKLPKVLIFHLKRFHYRQSNSHYSIRRDKINKLVDYQVENLDMSPFVIDPKEACNGVPPNYELCGVVNHMGSMSFGHYTAYVKHPDKKDESKWRLADDSHVRDV 314          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A6P6Y7S0_DERPT (Ubiquitinyl hydrolase 1 n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y7S0_DERPT)

HSP 1 Score: 77.0 bits (188), Expect = 4.470e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKN--NRIVTFPLHHLNLTPFLV--PTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            W CP C K    +K+  I   P  L++ LKRF +     L+++  N +V FP+ +L+++P+++  P   S  Y+L+ V  H G L  GHYTA  K   S  W+L +D SVTPI
Sbjct: 1020 WYCPRCKKHQMASKKFDIWSLPNNLIIHLKRFSY---SRLHRDKLNVLVEFPIENLDMSPYVLHNPNKESLVYDLIAVSNHYGELGAGHYTAYAKNFQSNNWYLFDDYSVTPI 1129          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A0L0TAT2_ALLM3 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TAT2_ALLM3)

HSP 1 Score: 75.5 bits (184), Expect = 1.400e-13
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            + CP C ++ R +KR  + +APP+L+V LKRF  L +    K +  V FP+  L+L+       P+A Y+LV VV+H GSL  GHYTA V++     W+  ND +V  +
Sbjct:  336 YHCPRCQRRERSSKRLQVHRAPPVLVVHLKRFASLRA----KLSVPVDFPVDRLDLSVAATAPVPAA-YKLVAVVQHYGSLAMGHYTATVRR-AGDRWFKANDSTVMQV 438          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: UPI000719A443 (uncharacterized protein LOC106807940 isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A443)

HSP 1 Score: 75.1 bits (183), Expect = 2.040e-13
Identity = 42/109 (38.53%), Postives = 56/109 (51.38%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAE--YELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVT 339
            W CP C +  R  K   I + PP L++ LKRF      +L K    V FPL  L+L+ F+  T    +  Y+L   V H G    GHYT+  K   S EW+ CNDD++T
Sbjct:  374 WYCPQCQQNQRAEKTMTIWRYPPTLIIYLKRFVFYDLTSL-KLEDTVLFPLEQLDLSQFISATHKENDFVYDLHSCVCHFGGPNAGHYTSYTKHLLSDEWFFCNDDTLT 481          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: UPI001F8EC38C (Ubiquitin carboxyl-terminal hydrolase 15 n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F8EC38C)

HSP 1 Score: 74.7 bits (182), Expect = 2.890e-13
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKN--NRIVTFPLHHLNLTPFLV--PTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345
            W CP C K    +K+  I   P  L++ LKRF +     L+++  N +V FP+ +L+++P+++  P   S  Y+L+ V  H G L  GHYTA  K   S  W+L +D SVTPI
Sbjct: 1070 WYCPRCKKHQMASKKFDIWSLPNNLIIHLKRFSY---SRLHRDKLNVLVEFPIENLDMSPYVLHNPNNESFVYDLIAVSNHYGELGAGHYTAYGKNFQSNNWFLFDDYSVTPI 1179          
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: D8T640_SELML (USP domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T640_SELML)

HSP 1 Score: 72.8 bits (177), Expect = 7.900e-13
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   10 ESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQE-----WWLCNDDSV 336
            E+ W C +C ++ +  KR +I+KAPP+L V LKRF     G L K    V F    LNL+PFL  +     Y LVGVV+H G+++ GHY A V+  ++ +     W+  +D  V
Sbjct:  191 ENAWGCDNCTRR-KATKRLVIRKAPPVLTVHLKRFAQDMRGRLSKLTGHVAFD-ELLNLSPFLSTSRDGGLYRLVGVVEHSGTMKGGHYVAFVRGGSAGDGKENFWYYISDSDV 302          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GVM4_HEMAN7.450e-2144.14Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1G4KN19_9SACH1.750e-1945.05Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lach... [more]
A0A1G4IYY8_9SACH2.580e-1642.48Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lach... [more]
A0A0L0S8D5_ALLM39.000e-1541.82Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allo... [more]
E4XT03_OIKDI1.760e-1434.43USP domain-containing protein n=1 Tax=Oikopleura d... [more]
A0A6P6Y7S0_DERPT4.470e-1438.05Ubiquitinyl hydrolase 1 n=1 Tax=Dermatophagoides p... [more]
A0A0L0TAT2_ALLM31.400e-1339.45Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allo... [more]
UPI000719A4432.040e-1338.53uncharacterized protein LOC106807940 isoform X1 n=... [more]
UPI001F8EC38C2.890e-1338.05Ubiquitin carboxyl-terminal hydrolase 15 n=2 Tax=D... [more]
D8T640_SELML7.900e-1338.60USP domain-containing protein (Fragment) n=2 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103402contigM-pyrifera_M_contig103402:26..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score85.5
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog6326.BUX.s00713.849
KEGG koko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0012505,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0097708
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs1KUUF@119089,38DC9@33154,3BB2H@33208,3CX29@33213,40CNB@6231,KOG1868@1,KOG1868@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.1991372-CDS-M-pyrifera_M_contig103402:25..3701622815539.1991372-CDS-M-pyrifera_M_contig103402:25..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103402 26..370 -
1692277454.9774668-CDS-M-pyrifera_M_contig103402:25..3701692277454.9774668-CDS-M-pyrifera_M_contig103402:25..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103402 26..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103402.721.1prot_M-pyrifera_M_contig103402.721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103402 26..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103402.721.1

>prot_M-pyrifera_M_contig103402.721.1 ID=prot_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
ERLESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNN
RIVTFPLHHLNLTPFLVPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPT
SQEWWLCNDDSVTPI
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mRNA from alignment at M-pyrifera_M_contig103402:26..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103402.721.1 ID=mRNA_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig103402:26..370- (Macrocystis pyrifera P11B4 male)
GAAAGGTTGGAAAGTACATGGCAATGTCCTTCTTGTGGGAAACAAACAAG ACCCAACAAGAGACAGTTGATCAAGAAAGCTCCACCAATCCTTCTAGTTG CACTGAAACGGTTCCATCATCTCCCCTCGGGGACACTCTACAAGAACAAT CGCATTGTTACTTTTCCACTCCATCATCTCAACCTCACCCCATTTCTAGT ACCCACTGCACCATCTGCAGAGTATGAACTTGTTGGTGTTGTGAAGCATG TTGGATCTCTCCAACGTGGGCACTACACTGCAGCAGTCAAACAACCTACC TCTCAAGAATGGTGGTTGTGCAATGATGACTCTGTGACTCCAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103402:26..370-

>mRNA_M-pyrifera_M_contig103402.721.1 ID=mRNA_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig103402:26..370- (Macrocystis pyrifera P11B4 male)
GAAAGGTTGGAAAGTACATGGCAATGTCCTTCTTGTGGGAAACAAACAAG
ACCCAACAAGAGACAGTTGATCAAGAAAGCTCCACCAATCCTTCTAGTTG
CACTGAAACGGTTCCATCATCTCCCCTCGGGGACACTCTACAAGAACAAT
CGCATTGTTACTTTTCCACTCCATCATCTCAACCTCACCCCATTTCTAGT
ACCCACTGCACCATCTGCAGAGTATGAACTTGTTGGTGTTGTGAAGCATG
TTGGATCTCTCCAACGTGGGCACTACACTGCAGCAGTCAAACAACCTACC
TCTCAAGAATGGTGGTTGTGCAATGATGACTCTGTGACTCCAATCGAAAG
GTTGGAAAGTACATGGCAATGTCCTTCTTGTGGGAAACAAACAAGACCCA
ACAAGAGACAGTTGATCAAGAAAGCTCCACCAATCCTTCTAGTTGCACTG
AAACGGTTCCATCATCTCCCCTCGGGGACACTCTACAAGAACAATCGCAT
TGTTACTTTTCCACTCCATCATCTCAACCTCACCCCATTTCTAGTACCCA
CTGCACCATCTGCAGAGTATGAACTTGTTGGTGTTGTGAAGCATGTTGGA
TCTCTCCAACGTGGGCACTACACTGCAGCAGTCAAACAACCTACCTCTCA
AGAATGGTGGTTGTGCAATGATGACTCTGTGACTCCAATC
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