mRNA_M-pyrifera_M_contig10340.719.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10340.719.1
Unique NamemRNA_M-pyrifera_M_contig10340.719.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10340.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10340contigM-pyrifera_M_contig10340:2702..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size665
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.0466363-CDS-M-pyrifera_M_contig10340:2701..31901622815539.0466363-CDS-M-pyrifera_M_contig10340:2701..3190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10340 2702..3190 +
1692277454.939242-CDS-M-pyrifera_M_contig10340:2701..31901692277454.939242-CDS-M-pyrifera_M_contig10340:2701..3190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10340 2702..3190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.1222103-UTR-M-pyrifera_M_contig10340:3190..33651622815539.1222103-UTR-M-pyrifera_M_contig10340:3190..3365Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10340 3191..3365 +
1692277454.9535587-UTR-M-pyrifera_M_contig10340:3190..33651692277454.9535587-UTR-M-pyrifera_M_contig10340:3190..3365Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10340 3191..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10340.719.1prot_M-pyrifera_M_contig10340.719.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10340 2702..3190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10340.719.1

>prot_M-pyrifera_M_contig10340.719.1 ID=prot_M-pyrifera_M_contig10340.719.1|Name=mRNA_M-pyrifera_M_contig10340.719.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
PERVFLKRKKSRVPNRRVPLCVSRTTTTTQLTPLKQSPLSWFTVRLQYIT
RKRSNEKCVLVTPAHLCLLWCRLREHARCAPRPHKKATLLFLFNGLAFIG
KGRQRSTATKKGPRGHDDTTALLACHAAPVLALSVPGAPLSCLKSLFRRK
STARGTNTSIAE*
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mRNA from alignment at M-pyrifera_M_contig10340:2702..3365+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10340.719.1 ID=mRNA_M-pyrifera_M_contig10340.719.1|Name=mRNA_M-pyrifera_M_contig10340.719.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=664bp|location=Sequence derived from alignment at M-pyrifera_M_contig10340:2702..3365+ (Macrocystis pyrifera P11B4 male)
CCCGAGAGAGTTTTCTTAAAACGAAAAAAAAGTCGTGTTCCGAACAGACG
TGTCCCGTTGTGTGTATCCCGGACGACGACGACGACTCAGTTAACCCCCC
TAAAACAATCTCCTCTTTCTTGGTTTACAGTGCGACTACAGTACATCACC
CGGAAGCGCTCAAATGAGAAATGCGTGCTGGTCACGCCCGCGCATCTATG
TCTGCTATGGTGCCGACTGCGGGAGCATGCGCGGTGCGCCCCTCGTCCTC
ACAAAAAAGCTACCCTTCTTTTCTTATTTAACGGACTCGCATTTATTGGC
AAAGGTCGACAAAGGTCGACAGCGACAAAGAAAGGACCGCGAGGACACGA
TGACACTACTGCCCTCCTTGCTTGCCACGCAGCCCCCGTTCTTGCACTTT
CCGTGCCTGGCGCCCCTCTCTCTTGCCTCAAAAGTCTTTTTCGTCGTAAA
TCTACCGCGCGAGGTACGAATACTAGTATAGCAGAGTAATCGCACCGCGT
ACTGACTTCCACTGCTCCGCGTTTTCGGAAATAATCTGAGCCACGGAGTT
ATCGAAAAGCCGTGCGCCCGCGGCCAACAAACCAGTCAACCACACAATCA
TCTCAGCCATACCAACCATACAAACAAACCACCTGCAAACCAATGCTCCA
GCTTTCAACATCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10340:2702..3365+

>mRNA_M-pyrifera_M_contig10340.719.1 ID=mRNA_M-pyrifera_M_contig10340.719.1|Name=mRNA_M-pyrifera_M_contig10340.719.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig10340:2702..3365+ (Macrocystis pyrifera P11B4 male)
CCCGAGAGAGTTTTCTTAAAACGAAAAAAAAGTCGTGTTCCGAACAGACG
TGTCCCGTTGTGTGTATCCCGGACGACGACGACGACTCAGTTAACCCCCC
TAAAACAATCTCCTCTTTCTTGGTTTACAGTGCGACTACAGTACATCACC
CGGAAGCGCTCAAATGAGAAATGCGTGCTGGTCACGCCCGCGCATCTATG
TCTGCTATGGTGCCGACTGCGGGAGCATGCGCGGTGCGCCCCTCGTCCTC
ACAAAAAAGCTACCCTTCTTTTCTTATTTAACGGACTCGCATTTATTGGC
AAAGGTCGACAAAGGTCGACAGCGACAAAGAAAGGACCGCGAGGACACGA
TGACACTACTGCCCTCCTTGCTTGCCACGCAGCCCCCGTTCTTGCACTTT
CCGTGCCTGGCGCCCCTCTCTCTTGCCTCAAAAGTCTTTTTCGTCGTAAA
TCTACCGCGCGAGGTACGAATACTAGTATAGCAGAGTAACCCGAGAGAGT
TTTCTTAAAACGAAAAAAAAGTCGTGTTCCGAACAGACGTGTCCCGTTGT
GTGTATCCCGGACGACGACGACGACTCAGTTAACCCCCCTAAAACAATCT
CCTCTTTCTTGGTTTACAGTGCGACTACAGTACATCACCCGGAAGCGCTC
AAATGAGAAATGCGTGCTGGTCACGCCCGCGCATCTATGTCTGCTATGGT
GCCGACTGCGGGAGCATGCGCGGTGCGCCCCTCGTCCTCACAAAAAAGCT
ACCCTTCTTTTCTTATTTAACGGACTCGCATTTATTGGCAAAGGTCGACA
AAGGTCGACAGCGACAAAGAAAGGACCGCGAGGACACGATGACACTACTG
CCCTCCTTGCTTGCCACGCAGCCCCCGTTCTTGCACTTTCCGTGCCTGGC
GCCCCTCTCTCTTGCCTCAAAAGTCTTTTTCGTCGTAAATCTACCGCGCG
AGGTACGAATACTAGTATAGCAGAGTAA
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