mRNA_M-pyrifera_M_contig103379.713.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103379.713.1
Unique NamemRNA_M-pyrifera_M_contig103379.713.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103379.713.1 vs. uniprot
Match: A0A2P6MQV1_9EUKA (PH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MQV1_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 4.690e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    4 EGQLQKKGDRGPLRNWRTRTFRLCEASRTAKYFDGAKQ---MGSIDLNAVTRAEREERAKDHRFNVHTPKRVYHLKAADEAAVDEWIAAFMRF-----ATPAEEREAKKD 309
            EG LQKKGD GP++NW+ R FRL        YF  A+    +G+IDL   T   R    K+H F++ TP R ++L+  +++  + WIA   +      + P E +E  K+
Sbjct:  152 EGYLQKKGDVGPIKNWKKRHFRLYAEEHKIAYFKSAEDTESLGTIDLKTATGLNRTTYKKEHGFDIKTPSRTWNLRTDNKSDYEGWIAVLEKTTGVSASAPTEAKEEGKE 261
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BLAST of mRNA_M-pyrifera_M_contig103379.713.1 vs. uniprot
Match: A0A8J4Q370_9MYCE (PH domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q370_9MYCE)

HSP 1 Score: 53.9 bits (128), Expect = 6.770e-5
Identity = 32/102 (31.37%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 LEGQLQKKGDRGPLRNWRTRTFRLCEASRTAKYFD----------------GAKQMGSIDLNAVTRAEREERAKDHRFNVHTPKRVYHLKAADEAAVDEWIA 258
            +EG L K+G++G ++ ++TR F+L +      Y++                GA  +GSIDL  VT  ++ +   +  F+V  P R Y L+A DE++V+ WI+
Sbjct:    7 IEGWLDKQGEKGLIKGFKTRYFQLSKNGYDLHYYESQPPEEVSFNSNIGVVGANSLGSIDLKQVTSTKKFD---NFIFHVEVPGRSYILRAKDESSVNYWIS 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103379.713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P6MQV1_9EUKA4.690e-1135.45PH domain-containing protein n=1 Tax=Planoprotoste... [more]
A0A8J4Q370_9MYCE6.770e-531.37PH domain-containing protein n=1 Tax=Polysphondyli... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103379contigM-pyrifera_M_contig103379:2..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.8099334-CDS-M-pyrifera_M_contig103379:1..6371622815538.8099334-CDS-M-pyrifera_M_contig103379:1..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103379 2..637 -
1692277454.8608372-CDS-M-pyrifera_M_contig103379:1..6371692277454.8608372-CDS-M-pyrifera_M_contig103379:1..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103379 2..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103379.713.1prot_M-pyrifera_M_contig103379.713.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103379 2..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103379.713.1

>prot_M-pyrifera_M_contig103379.713.1 ID=prot_M-pyrifera_M_contig103379.713.1|Name=mRNA_M-pyrifera_M_contig103379.713.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
LEGQLQKKGDRGPLRNWRTRTFRLCEASRTAKYFDGAKQMGSIDLNAVTR
AEREERAKDHRFNVHTPKRVYHLKAADEAAVDEWIAAFMRFATPAEEREA
KKDEKEAKKEAKKEAKKEAKKEEADGDEEEASAELEHSAEAKEASGEEAS
KEEASKEEASKEEAEEGQAREAPQEEASKEEASKEEASKEEASKEAASKE
EAEEKEEASKEE
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mRNA from alignment at M-pyrifera_M_contig103379:2..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103379.713.1 ID=mRNA_M-pyrifera_M_contig103379.713.1|Name=mRNA_M-pyrifera_M_contig103379.713.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig103379:2..637- (Macrocystis pyrifera P11B4 male)
CTGGAGGGCCAGCTGCAGAAGAAGGGCGACCGCGGCCCGCTCCGCAACTG
GCGCACCCGCACCTTCCGCCTGTGCGAGGCCTCGCGCACCGCAAAGTACT
TCGACGGCGCCAAGCAGATGGGCAGCATCGACCTCAACGCCGTGACGAGG
GCCGAGCGCGAGGAGCGCGCCAAGGACCACCGCTTCAACGTGCACACGCC
CAAGCGCGTCTACCACCTCAAGGCCGCCGACGAGGCGGCCGTCGACGAGT
GGATCGCGGCCTTCATGCGCTTTGCCACGCCCGCAGAGGAGCGCGAGGCG
AAGAAGGACGAGAAGGAGGCCAAGAAGGAGGCCAAGAAGGAGGCCAAGAA
GGAGGCCAAGAAGGAGGAGGCCGACGGCGACGAAGAGGAGGCCAGCGCCG
AGCTCGAGCACTCTGCCGAGGCCAAGGAGGCCAGCGGCGAGGAGGCCAGC
AAGGAGGAGGCCAGCAAGGAGGAGGCCAGCAAGGAGGAGGCCGAGGAGGG
CCAGGCCCGCGAGGCCCCCCAGGAGGAGGCCAGCAAGGAGGAGGCCAGCA
AGGAGGAGGCCAGCAAGGAGGAGGCCAGCAAGGAGGCGGCCAGCAAGGAG
GAGGCCGAGGAGAAGGAGGAGGCCAGCAAGGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103379:2..637-

>mRNA_M-pyrifera_M_contig103379.713.1 ID=mRNA_M-pyrifera_M_contig103379.713.1|Name=mRNA_M-pyrifera_M_contig103379.713.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig103379:2..637- (Macrocystis pyrifera P11B4 male)
CTGGAGGGCCAGCTGCAGAAGAAGGGCGACCGCGGCCCGCTCCGCAACTG
GCGCACCCGCACCTTCCGCCTGTGCGAGGCCTCGCGCACCGCAAAGTACT
TCGACGGCGCCAAGCAGATGGGCAGCATCGACCTCAACGCCGTGACGAGG
GCCGAGCGCGAGGAGCGCGCCAAGGACCACCGCTTCAACGTGCACACGCC
CAAGCGCGTCTACCACCTCAAGGCCGCCGACGAGGCGGCCGTCGACGAGT
GGATCGCGGCCTTCATGCGCTTTGCCACGCCCGCAGAGGAGCGCGAGGCG
AAGAAGGACGAGAAGGAGGCCAAGAAGGAGGCCAAGAAGGAGGCCAAGAA
GGAGGCCAAGAAGGAGGAGGCCGACGGCGACGAAGAGGAGGCCAGCGCCG
AGCTCGAGCACTCTGCCGAGGCCAAGGAGGCCAGCGGCGAGGAGGCCAGC
AAGGAGGAGGCCAGCAAGGAGGAGGCCAGCAAGGAGGAGGCCGAGGAGGG
CCAGGCCCGCGAGGCCCCCCAGGAGGAGGCCAGCAAGGAGGAGGCCAGCA
AGGAGGAGGCCAGCAAGGAGGAGGCCAGCAAGGAGGCGGCCAGCAAGGAG
GAGGCCGAGGAGAAGGAGGAGGCCAGCAAGGAGGAGCTGGAGGGCCAGCT
GCAGAAGAAGGGCGACCGCGGCCCGCTCCGCAACTGGCGCACCCGCACCT
TCCGCCTGTGCGAGGCCTCGCGCACCGCAAAGTACTTCGACGGCGCCAAG
CAGATGGGCAGCATCGACCTCAACGCCGTGACGAGGGCCGAGCGCGAGGA
GCGCGCCAAGGACCACCGCTTCAACGTGCACACGCCCAAGCGCGTCTACC
ACCTCAAGGCCGCCGACGAGGCGGCCGTCGACGAGTGGATCGCGGCCTTC
ATGCGCTTTGCCACGCCCGCAGAGGAGCGCGAGGCGAAGAAGGACGAGAA
GGAGGCCAAGAAGGAGGCCAAGAAGGAGGCCAAGAAGGAGGCCAAGAAGG
AGGAGGCCGACGGCGACGAAGAGGAGGCCAGCGCCGAGCTCGAGCACTCT
GCCGAGGCCAAGGAGGCCAGCGGCGAGGAGGCCAGCAAGGAGGAGGCCAG
CAAGGAGGAGGCCAGCAAGGAGGAGGCCGAGGAGGGCCAGGCCCGCGAGG
CCCCCCAGGAGGAGGCCAGCAAGGAGGAGGCCAGCAAGGAGGAGGCCAGC
AAGGAGGAGGCCAGCAAGGAGGCGGCCAGCAAGGAGGAGGCCGAGGAGAA
GGAGGAGGCCAGCAAGGAGGAG
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