mRNA_M-pyrifera_M_contig103367.709.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103367.709.1
Unique NamemRNA_M-pyrifera_M_contig103367.709.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001F4767AB (polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Agromyces marinus TaxID=1389020 RepID=UPI001F4767AB)

HSP 1 Score: 55.8 bits (133), Expect = 1.420e-6
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 1
Query:    1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGS-------ATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEA 354
            L DYLRG+R H +A+VL TL G+  G       TP Y +S S ++  T  G+           ARS V         +D VAQ VID LDLD TP QL+    V+    + IL     A +P++A
Sbjct:    3 LRDYLRGLRRHWIAIVLMTLVGIGAGYGWTLLQTPVYVASASGLVQSTGQGADVGSMSLGDSVARSRVPSYLIIAGWTD-VAQGVIDDLDLDTTPEQLVERVEVTNADGTVILSASAEASTPEDA 126          
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: A0A3E0VEH4_9MICO (Chromosome partitioning protein n=1 Tax=Subtercola boreus TaxID=120213 RepID=A0A3E0VEH4_9MICO)

HSP 1 Score: 53.5 bits (127), Expect = 9.090e-6
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369
            L DYLR +R   + +V  TL G+    L+     P Y +S  V +     GS ++ ++     +      ++V+T+ AV Q VID+L LD +   L    + S    + ++D+ ++  S Q AAE AN
Sbjct:    3 LRDYLRVVRKGWVIIVAITLAGVAAASLISIAEVPKYLASSKVFVSAESAGSVSELSQGSSFTQNQVKSYTDVVTTPAVLQPVIDQLGLDISAADLAKQVTASTAVGTVVVDISVTDESAQHAAEIAN 130          
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001E5CEB1B (polysaccharide biosynthesis tyrosine autokinase n=2 Tax=Nocardioides sp. cx-173 TaxID=2898796 RepID=UPI001E5CEB1B)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-5
Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEA 354
            L DYLR +R     + +  L GL V  L+    TP Y SSV + +  T   S + A  S +L ++     ++  TS  +A QV++ LDL+ TP +L+   S   +P + +L+L ++   P +A
Sbjct:   13 LRDYLRVVRRRWGVIAVAALLGLGVAALLTYTATPKYASSVKLYVS-TAQSSTSAALESGLLSQQRIFSYTDFATSRELAAQVVNELDLEVTPGELIGKVSAVVVPDTVVLELTVTDPDPAQA 134          
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI00109CBFC4 (Wzz/FepE/Etk N-terminal domain-containing protein n=4 Tax=Microbacterium TaxID=33882 RepID=UPI00109CBFC4)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-5
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 1
Query:    1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPR-SEILDLEISAGSPQEAAETAN 369
            LED  RG+    + +V T +   LVG  +F      Y +     + P  V S   +  +  +E E  V TS AV ++ ++  DLD T  + L   +V  +PR S++L  +++A +PQEAA+ AN
Sbjct:    7 LEDLYRGVMQSWMVLVGTIVAFALVGFGIFLIYPQKYTAEAQHTVEPISVLSTGSSFNTVNMETEKVVATSTAVLKRAVE--DLDDTSIEALRNNTVIDVPRNSQVLSFQVTANTPQEAADRAN 128          
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: A0A3E0W244_9MICO (Chromosome partitioning protein n=1 Tax=Subtercola boreus TaxID=120213 RepID=A0A3E0W244_9MICO)

HSP 1 Score: 51.6 bits (122), Expect = 4.270e-5
Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369
            L DYLR +R   + ++   L G+ +G +     TP Y +S  V +     G+ ++  +     +      ++++T+ AV Q VI +L L  T   L +  + S    + ++D+ +S GSPQ AA+ AN
Sbjct:    3 LRDYLRVLRKGWIIILALVLMGVALGSVFSLLSTPMYLASSKVFVSVQSAGTVSELTQGSNFTQNQVKSYADIITTPAVLQPVITQLQLPITAETLASRVTASTATGTVVVDIGVSDGSPQSAADIAN 130          
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001CA3FD5E (polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Nocardioides sp. SCSIO 67246 TaxID=2872154 RepID=UPI001CA3FD5E)

HSP 1 Score: 51.6 bits (122), Expect = 4.310e-5
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 LEDYLRGIRSH-KLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369
            L D+L  +R   +L VV   LG +  G+ + A   P Y +  +++L P +V +      +  +  ++ V+ S  VAQ+V++RLDLD  P +LL T +   + ++  + +    G+  EAA  AN
Sbjct:    8 LGDHLAIMRRRWRLPVVFLVLG-VAAGVGLSALQDPLYRAESTLLLEPDKVSTTAVVMDADEVATQARVVASAPVAQRVVERLDLDELPDELLGTVTADVIEQTRTVAITAERGTAAEAAAVAN 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001F4767AB1.420e-637.60polysaccharide biosynthesis tyrosine autokinase n=... [more]
A0A3E0VEH4_9MICO9.090e-629.69Chromosome partitioning protein n=1 Tax=Subtercola... [more]
UPI001E5CEB1B1.240e-531.71polysaccharide biosynthesis tyrosine autokinase n=... [more]
UPI00109CBFC41.480e-532.26Wzz/FepE/Etk N-terminal domain-containing protein ... [more]
A0A3E0W244_9MICO4.270e-528.13Chromosome partitioning protein n=1 Tax=Subtercola... [more]
UPI001CA3FD5E4.310e-529.84polysaccharide biosynthesis tyrosine autokinase n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103367contigM-pyrifera_M_contig103367:279..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue5e-07
Seed eggNOG ortholog397278.JOJN01000002_gene168
KEGG koko:K08252,ko:K16692
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.AAA domain
EggNOG OGs2GJ1Y@201174,4DMYV@85009,COG0489@1,COG0489@2,COG3944@1,COG3944@2
EC2.7.10.1
COG Functional cat.DM
Best tax levelPropionibacteriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.6389527-CDS-M-pyrifera_M_contig103367:278..6471622815538.6389527-CDS-M-pyrifera_M_contig103367:278..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103367 279..647 +
1692277454.801645-CDS-M-pyrifera_M_contig103367:278..6471692277454.801645-CDS-M-pyrifera_M_contig103367:278..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103367 279..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103367.709.1prot_M-pyrifera_M_contig103367.709.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103367 279..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103367.709.1

>prot_M-pyrifera_M_contig103367.709.1 ID=prot_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRV
GSATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFL
PRSEILDLEISAGSPQEAAETAN
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mRNA from alignment at M-pyrifera_M_contig103367:279..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103367.709.1 ID=mRNA_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig103367:279..647+ (Macrocystis pyrifera P11B4 male)
CTCGAGGACTATCTACGCGGGATTCGCAGCCACAAGCTGGCCGTCGTCCT CACCACCCTCGGTGGGCTGCTCGTCGGCCTGTTGGTCTTCGCCCAGATGA CACCGACCTACAACTCGTCGGTCAGCGTCGTCCTCGGCCCGACCAGAGTC GGGTCGGCCACCGATGCCGCTCGATCGCCAGTTCTCGAACGTGAATCCGA AGTGTTGACGTCGGATGCCGTCGCTCAGCAGGTGATCGATCGACTCGACC TCGACGCCACCCCACCCCAACTCCTCGCCACCGCCAGTGTCAGCTTTCTC CCCCGAAGCGAAATTCTCGATCTCGAGATCTCCGCCGGCAGCCCGCAAGA AGCGGCCGAGACCGCCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103367:279..647+

>mRNA_M-pyrifera_M_contig103367.709.1 ID=mRNA_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig103367:279..647+ (Macrocystis pyrifera P11B4 male)
CTCGAGGACTATCTACGCGGGATTCGCAGCCACAAGCTGGCCGTCGTCCT
CACCACCCTCGGTGGGCTGCTCGTCGGCCTGTTGGTCTTCGCCCAGATGA
CACCGACCTACAACTCGTCGGTCAGCGTCGTCCTCGGCCCGACCAGAGTC
GGGTCGGCCACCGATGCCGCTCGATCGCCAGTTCTCGAACGTGAATCCGA
AGTGTTGACGTCGGATGCCGTCGCTCAGCAGGTGATCGATCGACTCGACC
TCGACGCCACCCCACCCCAACTCCTCGCCACCGCCAGTGTCAGCTTTCTC
CCCCGAAGCGAAATTCTCGATCTCGAGATCTCCGCCGGCAGCCCGCAAGA
AGCGGCCGAGACCGCCAACCTCGAGGACTATCTACGCGGGATTCGCAGCC
ACAAGCTGGCCGTCGTCCTCACCACCCTCGGTGGGCTGCTCGTCGGCCTG
TTGGTCTTCGCCCAGATGACACCGACCTACAACTCGTCGGTCAGCGTCGT
CCTCGGCCCGACCAGAGTCGGGTCGGCCACCGATGCCGCTCGATCGCCAG
TTCTCGAACGTGAATCCGAAGTGTTGACGTCGGATGCCGTCGCTCAGCAG
GTGATCGATCGACTCGACCTCGACGCCACCCCACCCCAACTCCTCGCCAC
CGCCAGTGTCAGCTTTCTCCCCCGAAGCGAAATTCTCGATCTCGAGATCT
CCGCCGGCAGCCCGCAAGAAGCGGCCGAGACCGCCAAC
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