mRNA_M-pyrifera_M_contig103365.708.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103365.708.1
Unique NamemRNA_M-pyrifera_M_contig103365.708.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A7S4M496_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M496_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 2.820e-18
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   58 FQATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            F ATV +DY A+++YE++IK G+ I V+S+H NGWWLG  GDGKQGYFPGSYV  I
Sbjct:  268 FGATVKFDYEARKNYELSIKKGDIITVVSQHDNGWWLGCDGDGKQGYFPGSYVVAI 323          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A197K231_9FUNG (Cytochrome P450 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K231_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 6.130e-11
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   46 KPKKFQATVLYDYTAQQDYEMTIKSGETIAVLSKHGN-GWWLGATGDGKQGYFPGSYVEPI 225
            K K+ +A V+YDYTAQ+D E+T+  G TI V  K G+ GWW G   DG+ G FP  +VE I
Sbjct:  859 KSKQIRAVVIYDYTAQEDDEITLVKGATIVVTDKMGDEGWWSGRNEDGEVGNFPSDFVEEI 919          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A8C9YC57_SANLU (Nitric oxide synthase trafficking n=3 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9YC57_SANLU)

HSP 1 Score: 63.9 bits (154), Expect = 3.860e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   70 VLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            VLY++T QQD E+T+K G+ + +  K  NGWW+G   DGK G+FP +YVE +
Sbjct:  458 VLYNFTPQQDDELTLKEGDLLDIYGKEENGWWIGKL-DGKTGHFPSTYVEEL 508          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A6A5ENH3_PERFL (Uncharacterized protein n=4 Tax=Percidae TaxID=8165 RepID=A0A6A5ENH3_PERFL)

HSP 1 Score: 63.9 bits (154), Expect = 3.870e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   70 VLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            VLY++T QQD E+T+K G+ + +  K  NGWW+G   DGK G+FP +YVE +
Sbjct:  493 VLYNFTPQQDDELTLKEGDLLDIYGKEENGWWIGKL-DGKTGHFPSTYVEEL 543          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: UPI001E8D6EDD (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Emericellopsis atlantica TaxID=2614577 RepID=UPI001E8D6EDD)

HSP 1 Score: 63.5 bits (153), Expect = 5.440e-10
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   49 PKKFQATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            P K  A VLYD+  Q++ E++I  G+TI ++ K  NGWWLG T  G Q + P +YVE +
Sbjct: 1087 PPKIMAKVLYDFAGQRENELSISKGDTIEIVQKESNGWWLGKTAAG-QAWVPAAYVEEL 1144          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A3G2SBB0_9BASI (Drebrin-like protein n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2SBB0_9BASI)

HSP 1 Score: 62.8 bits (151), Expect = 9.930e-10
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   64 ATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            ATVLYDY AQ+D E+T++ GE +  + +   GWW      G  G FP +YVEP+
Sbjct:  380 ATVLYDYDAQEDNELTLREGEILTAIDQVDEGWWSATGPSGATGLFPANYVEPL 433          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A6I9PAD7_9TELE (nostrin n=5 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9PAD7_9TELE)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   70 VLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
             LYD+T +QD E+T+K G+ + +  K  NGWW G   DGK G+FP +YVE +
Sbjct:  482 ALYDFTPEQDDELTLKEGDLLDICGKEENGWWFGKL-DGKTGHFPSTYVEEL 532          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A8C3AZZ8_CYCLU (Nitric oxide synthase trafficking n=5 Tax=Cottioidei TaxID=8100 RepID=A0A8C3AZZ8_CYCLU)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-9
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   61 QATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            Q   LYD+T +QD E+T+K G+ + +  K  NGWW G   +GK+G+FP +YVE +
Sbjct:  486 QCKALYDFTPEQDDELTLKEGDLLDIYGKEENGWWFGKL-NGKRGHFPSTYVEEL 539          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A1X7VLS0_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VLS0_AMPQE)

HSP 1 Score: 62.4 bits (150), Expect = 1.400e-9
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   34 EDSDKPKKFQATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEPI 225
            E SD+ +  +   +Y YT+  D ++  + G+TI V   + NGWW G+  DG+QGYFPGSYVE +
Sbjct: 1118 ETSDEVEASEYKAVYTYTSDTDGDLKFQEGDTILVYWANPNGWWFGSV-DGRQGYFPGSYVEAV 1180          
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Match: A0A0A1TU15_ENTIV (SH3 domain containing protein (Fragment) n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1TU15_ENTIV)

HSP 1 Score: 60.8 bits (146), Expect = 1.440e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   49 PKKFQATVLYDYTAQQDYEMTIKSGETIAVLSKHGNGWWLGATGDGKQGYFPGSYVEP 222
            PKK +    +DYTAQ+  E+T K G+ I V+ K G+ WW+G   +G QGYFP +YV P
Sbjct:  136 PKKERVRCGFDYTAQEQGELTFKEGDIITVMKKEGD-WWMGEL-NGVQGYFPSNYVSP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103365.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M496_9EUKA2.820e-1864.29Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A197K231_9FUNG6.130e-1150.82Cytochrome P450 n=1 Tax=Linnemannia elongata AG-77... [more]
A0A8C9YC57_SANLU3.860e-1050.00Nitric oxide synthase trafficking n=3 Tax=Sander l... [more]
A0A6A5ENH3_PERFL3.870e-1050.00Uncharacterized protein n=4 Tax=Percidae TaxID=816... [more]
UPI001E8D6EDD5.440e-1045.76P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3G2SBB0_9BASI9.930e-1046.30Drebrin-like protein n=2 Tax=Malassezia restricta ... [more]
A0A6I9PAD7_9TELE1.350e-948.08nostrin n=5 Tax=Notothenioidei TaxID=8205 RepID=A0... [more]
A0A8C3AZZ8_CYCLU1.350e-945.45Nitric oxide synthase trafficking n=5 Tax=Cottioid... [more]
A0A1X7VLS0_AMPQE1.400e-943.75Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A0A1TU15_ENTIV1.440e-948.28SH3 domain containing protein (Fragment) n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103365contigM-pyrifera_M_contig103365:134..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.7
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog32264.tetur38g00340.1
KEGG koko:K07976,ko:K12470,ko:K13738
KEGG Pathwayko04144,ko05100,map04144,map05100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Src homology 3 domains
EggNOG OGs38DPF@33154,3BAC3@33208,3D1ER@33213,41YM7@6656,KOG4348@1,KOG4348@2759
COG Functional cat.T
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.604849-CDS-M-pyrifera_M_contig103365:133..3611622815538.604849-CDS-M-pyrifera_M_contig103365:133..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103365 134..361 -
1692277454.7884657-CDS-M-pyrifera_M_contig103365:133..3611692277454.7884657-CDS-M-pyrifera_M_contig103365:133..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103365 134..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103365.708.1prot_M-pyrifera_M_contig103365.708.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103365 134..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103365.708.1

>prot_M-pyrifera_M_contig103365.708.1 ID=prot_M-pyrifera_M_contig103365.708.1|Name=mRNA_M-pyrifera_M_contig103365.708.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
DGADSDDQKAAEDSDKPKKFQATVLYDYTAQQDYEMTIKSGETIAVLSKH
GNGWWLGATGDGKQGYFPGSYVEPI*
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mRNA from alignment at M-pyrifera_M_contig103365:134..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103365.708.1 ID=mRNA_M-pyrifera_M_contig103365.708.1|Name=mRNA_M-pyrifera_M_contig103365.708.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig103365:134..361- (Macrocystis pyrifera P11B4 male)
GATGGCGCCGATTCTGACGACCAGAAGGCGGCCGAGGACTCGGACAAGCC GAAGAAGTTCCAGGCCACCGTGCTATACGACTACACCGCACAGCAGGACT ACGAGATGACCATCAAGAGCGGAGAGACGATTGCCGTTCTCTCCAAGCAC GGAAACGGCTGGTGGCTCGGAGCCACAGGCGACGGCAAGCAGGGCTACTT CCCCGGCTCGTACGTGGAGCCCATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103365:134..361-

>mRNA_M-pyrifera_M_contig103365.708.1 ID=mRNA_M-pyrifera_M_contig103365.708.1|Name=mRNA_M-pyrifera_M_contig103365.708.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig103365:134..361- (Macrocystis pyrifera P11B4 male)
GATGGCGCCGATTCTGACGACCAGAAGGCGGCCGAGGACTCGGACAAGCC
GAAGAAGTTCCAGGCCACCGTGCTATACGACTACACCGCACAGCAGGACT
ACGAGATGACCATCAAGAGCGGAGAGACGATTGCCGTTCTCTCCAAGCAC
GGAAACGGCTGGTGGCTCGGAGCCACAGGCGACGGCAAGCAGGGCTACTT
CCCCGGCTCGTACGTGGAGCCCATCTAGGATGGCGCCGATTCTGACGACC
AGAAGGCGGCCGAGGACTCGGACAAGCCGAAGAAGTTCCAGGCCACCGTG
CTATACGACTACACCGCACAGCAGGACTACGAGATGACCATCAAGAGCGG
AGAGACGATTGCCGTTCTCTCCAAGCACGGAAACGGCTGGTGGCTCGGAG
CCACAGGCGACGGCAAGCAGGGCTACTTCCCCGGCTCGTACGTGGAGCCC
ATCTAG
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