mRNA_M-pyrifera_M_contig103348.706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103348.706.1
Unique NamemRNA_M-pyrifera_M_contig103348.706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A3A9U101_RHOOP (L-aspartate oxidase n=2 Tax=Rhodococcus TaxID=1827 RepID=A0A3A9U101_RHOOP)

HSP 1 Score: 58.2 bits (139), Expect = 9.410e-9
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 LHPSHT---DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            LH SH    D+VQAL FALFRTY VPSI +LL KTGEF +RV KR
Sbjct:   25 LHFSHEFPWDSVQALSFALFRTYAVPSIGELLDKTGEFGNRVQKR 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A431NNS3_9PSEU (DUF2236 domain-containing protein n=4 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A431NNS3_9PSEU)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            D  QAL FALFRTY VPSI KLLH TGEF+ RV KR
Sbjct:   43 DVNQALSFALFRTYAVPSIGKLLHTTGEFTGRVQKR 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A292YJT7_9PSEU (MPAB_Lcp_cat domain-containing protein n=1 Tax=Pseudonocardia sp. N23 TaxID=1987376 RepID=A0A292YJT7_9PSEU)

HSP 1 Score: 55.5 bits (132), Expect = 8.860e-8
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            LH    D  QAL FALFRTY VPSI  LLH+TGEF+ RV KR
Sbjct:   32 LHEFPWDINQALSFALFRTYAVPSIGMLLHETGEFTRRVQKR 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI001B2CC544 (DUF2236 domain-containing protein n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=UPI001B2CC544)

HSP 1 Score: 55.5 bits (132), Expect = 9.090e-8
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            H    D +QAL FALFRTY VPSI  LLH TGEF+ RV KR
Sbjct:   80 HEFPWDTLQALSFALFRTYAVPSIGDLLHDTGEFTKRVQKR 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: F4CXK1_PSEUX (MPAB_Lcp_cat domain-containing protein n=2 Tax=Pseudonocardia dioxanivorans TaxID=240495 RepID=F4CXK1_PSEUX)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            D  QAL FALFRTY VPSI +LLH+TGEF+ RV KR
Sbjct:   42 DINQALSFALFRTYAVPSIGRLLHRTGEFTRRVQKR 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI001E5A24BF (hypothetical protein n=1 Tax=Aeromicrobium sp. S22 TaxID=2662029 RepID=UPI001E5A24BF)

HSP 1 Score: 53.5 bits (127), Expect = 1.620e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            +H    D+ QAL FALFRTY VPSI +LLH+TGEF+    KR
Sbjct:   28 MHEFPWDSQQALSFALFRTYAVPSIGRLLHETGEFTGATQKR 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A3N2CZM3_9ACTN (Uncharacterized protein DUF2236 n=1 Tax=Marmoricola aurantiacus TaxID=86796 RepID=A0A3N2CZM3_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            H    D VQAL FALFRTY VPSI  LL +TGEF+ RV KR
Sbjct:   38 HDYPWDTVQALSFALFRTYAVPSIGSLLDRTGEFTGRVQKR 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   28 QALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            ++LEFALF TYGVPSISKLL KTGEF   VGKR
Sbjct:   63 KSLEFALFATYGVPSISKLLDKTGEFRKHVGKR 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A1A0KQI9_9ACTN (L-aspartate oxidase n=2 Tax=unclassified Gordonia TaxID=2657482 RepID=A0A1A0KQI9_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 2.230e-7
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            D  QAL FALFRTYGVPSI +LL +TGEF+ RV KR
Sbjct:   34 DINQALSFALFRTYGVPSIGRLLFRTGEFTERVQKR 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI000A9F3B61 (DUF2236 domain-containing protein n=1 Tax=Marmoricola sp. Leaf446 TaxID=1736379 RepID=UPI000A9F3B61)

HSP 1 Score: 54.3 bits (129), Expect = 2.320e-7
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126
            H    D +QAL FALFRTY VPSI  LL +TGEF+ RV KR
Sbjct:   47 HDYPWDTIQALSFALFRTYAVPSIGSLLDRTGEFTGRVQKR 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3A9U101_RHOOP9.410e-968.89L-aspartate oxidase n=2 Tax=Rhodococcus TaxID=1827... [more]
A0A431NNS3_9PSEU6.500e-875.00DUF2236 domain-containing protein n=4 Tax=Pseudono... [more]
A0A292YJT7_9PSEU8.860e-866.67MPAB_Lcp_cat domain-containing protein n=1 Tax=Pse... [more]
UPI001B2CC5449.090e-865.85DUF2236 domain-containing protein n=1 Tax=Nocardio... [more]
F4CXK1_PSEUX1.220e-772.22MPAB_Lcp_cat domain-containing protein n=2 Tax=Pse... [more]
UPI001E5A24BF1.620e-759.52hypothetical protein n=1 Tax=Aeromicrobium sp. S22... [more]
A0A3N2CZM3_9ACTN1.670e-765.85Uncharacterized protein DUF2236 n=1 Tax=Marmoricol... [more]
D8LGK0_ECTSI1.740e-778.79MPAB_Lcp_cat domain-containing protein n=2 Tax=Ect... [more]
A0A1A0KQI9_9ACTN2.230e-772.22L-aspartate oxidase n=2 Tax=unclassified Gordonia ... [more]
UPI000A9F3B612.320e-763.41DUF2236 domain-containing protein n=1 Tax=Marmoric... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103348contigM-pyrifera_M_contig103348:165..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.5237052-CDS-M-pyrifera_M_contig103348:164..2931622815538.5237052-CDS-M-pyrifera_M_contig103348:164..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103348 165..293 -
1692277454.7589052-CDS-M-pyrifera_M_contig103348:164..2931692277454.7589052-CDS-M-pyrifera_M_contig103348:164..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103348 165..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103348.706.1prot_M-pyrifera_M_contig103348.706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103348 165..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103348.706.1

>prot_M-pyrifera_M_contig103348.706.1 ID=prot_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR*
back to top

mRNA from alignment at M-pyrifera_M_contig103348:165..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103348.706.1 ID=mRNA_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig103348:165..293- (Macrocystis pyrifera P11B4 male)
CTCCACCCGTCGCACACGGACGCGGTACAGGCGCTGGAGTTTGCGCTGTT
CCGAACTTACGGCGTTCCGTCCATTTCGAAGCTGCTGCACAAAACGGGCG
AGTTTTCCAGTCGAGTGGGCAAGAGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103348:165..293-

>mRNA_M-pyrifera_M_contig103348.706.1 ID=mRNA_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig103348:165..293- (Macrocystis pyrifera P11B4 male)
CTCCACCCGTCGCACACGGACGCGGTACAGGCGCTGGAGTTTGCGCTGTT
CCGAACTTACGGCGTTCCGTCCATTTCGAAGCTGCTGCACAAAACGGGCG
AGTTTTCCAGTCGAGTGGGCAAGAGGTAACTCCACCCGTCGCACACGGAC
GCGGTACAGGCGCTGGAGTTTGCGCTGTTCCGAACTTACGGCGTTCCGTC
CATTTCGAAGCTGCTGCACAAAACGGGCGAGTTTTCCAGTCGAGTGGGCA
AGAGGTAA
back to top