mRNA_M-pyrifera_M_contig100000.7.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100000.7.1
Unique NamemRNA_M-pyrifera_M_contig100000.7.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A517PGN0_9PLAN (Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PGN0_9PLAN)

HSP 1 Score: 461 bits (1185), Expect = 4.450e-150
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            IFEDISTVREMESFFET+LQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS
Sbjct:  904 IFEDISTVREMESFFETALQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 1130
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A517ZZU9_9PLAN (Protein O-GlcNAc transferase n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZU9_9PLAN)

HSP 1 Score: 415 bits (1067), Expect = 6.240e-133
Identity = 202/227 (88.99%), Postives = 211/227 (92.95%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            IFEDISTVREME+FF+T+LQNTIP+ + S  QTC DTEKDLGMDA    SE+ D S ILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQST DAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKV DLI++SLPENPTVVEIGCGEGHLIRSLAKKIP+GKFIGFDPNAEIETEGGLIEAR MLFEPG HLAELQPDLIIS
Sbjct:  905 IFEDISTVREMETFFQTALQNTIPDRTHSPTQTCSDTEKDLGMDAASHLSESADQSKILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTEDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVCDLISSSLPENPTVVEIGCGEGHLIRSLAKKIPAGKFIGFDPNAEIETEGGLIEARNMLFEPGHHLAELQPDLIIS 1131
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A6I6ACV5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ACV5_9PLAN)

HSP 1 Score: 400 bits (1028), Expect = 2.580e-127
Identity = 198/227 (87.22%), Postives = 206/227 (90.75%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            IFEDIS VRE+ SFFET+LQN I + S S   TC DTEKD GMDA  Q SE  D SNI ++AMRNYTCPAC YHIAVQF+DGGLLPLTTLAWPQST +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKV DLIAASLPENPTVVEIGCGEGHLIRSLA+KIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS
Sbjct:  904 IFEDISAVRELGSFFETALQNHITDRSNSHTLTCSDTEKDHGMDAESQPSENLDRSNIYDTAMRNYTCPACSYHIAVQFYDGGLLPLTTLAWPQSTEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVCDLIAASLPENPTVVEIGCGEGHLIRSLARKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 1130
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A350K8L9_9PLAN (Glyco_transf_41 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K8L9_9PLAN)

HSP 1 Score: 354 bits (908), Expect = 6.630e-117
Identity = 174/230 (75.65%), Postives = 196/230 (85.22%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTI---PEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FED++T+RE+E+FFE++L+++    P +  S + +  +  K+  MDA   Q    DH  ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQS  +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQ V DLIA  LPENP VVEIGCGEGHL+RSLAKKIP GKFIGFDPNAEIETE GLIEAR MLFEPG+HLAEL+PDLIIS
Sbjct:  316 VFEDVNTIRELETFFESALKHSESQQPVNQSSFSLSSSNISKEPSMDASLNQPGNADHIKILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQSCEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQNVCDLIAIRLPENPIVVEIGCGEGHLLRSLAKKIPWGKFIGFDPNAEIETEDGLIEARAMLFEPGRHLAELKPDLIIS 545
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A518I589_9PLAN (Protein O-GlcNAc transferase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I589_9PLAN)

HSP 1 Score: 364 bits (934), Expect = 7.450e-114
Identity = 180/230 (78.26%), Postives = 201/230 (87.39%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTIPEH-SPSS--AQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FEDI+TVREME+FFE++LQ    +  +P S  +QT   + KD  MDA   ++++ DHS ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQS  +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIW+EHLQKV DLIA +LPENPTVVEIGCGEGHL+RSLAKKIP+G FIGFDPNAEIETEG LIEAR MLFEPG HL EL+PDLIIS
Sbjct:  905 VFEDINTVREMETFFESALQKIESQKKTPQSLTSQTSSASNKDDSMDASLNKTKSEDHSKILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQSCEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWTEHLQKVCDLIAETLPENPTVVEIGCGEGHLLRSLAKKIPNGTFIGFDPNAEIETEGALIEARAMLFEPGSHLGELRPDLIIS 1134
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A2E2BXP5_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BXP5_9PLAN)

HSP 1 Score: 363 bits (933), Expect = 1.030e-113
Identity = 181/230 (78.70%), Postives = 199/230 (86.52%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQ--NTI-PEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FEDI+T+RE+E+FF ++L+  NT  P + P  + +  D  K+  MDA   Q    DH  ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQS+ +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKV DLIA  LPENPTVVEIGCGEGHL+RSLAKKIPSGKFIGFDPNAEIETE GLIEARTMLFEPG HL+ELQPDLIIS
Sbjct:  905 VFEDINTIRELETFFVSALEHCNTRQPVNQPLLSLSSSDNSKEPSMDASINQPGNADHIKILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQSSEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVCDLIAVRLPENPTVVEIGCGEGHLLRSLAKKIPSGKFIGFDPNAEIETEDGLIEARTMLFEPGLHLSELQPDLIIS 1134
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A517X3A2_9PLAN (Protein O-GlcNAc transferase n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3A2_9PLAN)

HSP 1 Score: 360 bits (924), Expect = 1.980e-112
Identity = 175/230 (76.09%), Postives = 197/230 (85.65%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETS---LQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FED++TVRE+E+FFE++   L+     H P +      + KD  MDA    +++ DHS+ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQ+  +AQ MERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKV DLI+  LPENPTVVEIGCGEGHL+RSLAKKIP+GKFIGFDPNAEIETEG LI+AR MLFEPG HLAELQPDLIIS
Sbjct:  906 VFEDMNTVRELEAFFESAFHELETQKKTHQPHTNLISSASNKDESMDASLNNTQSQDHSHILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQTCEEAQTMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVCDLISEHLPENPTVVEIGCGEGHLLRSLAKKIPTGKFIGFDPNAEIETEGALIDARAMLFEPGTHLAELQPDLIIS 1135
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A517W4B8_9PLAN (TPR repeat-containing protein YrrB n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4B8_9PLAN)

HSP 1 Score: 360 bits (923), Expect = 2.740e-112
Identity = 174/230 (75.65%), Postives = 197/230 (85.65%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTIPE---HSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FED++TVRE+E+FFE++L     +   H P +      + KD  MDA    +++ DHS++LNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQ+  +AQ MERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKV DLI+  LPENPTVVEIGCGEGHL+RSLAKKIP+GKFIGFDPNAEIETEG LI+AR MLFEPG HLAELQPDLIIS
Sbjct:  906 VFEDMNTVRELEAFFESALHELETQKKTHQPHTNLISSASNKDESMDASLNNTQSQDHSHLLNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQTCEEAQTMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVCDLISEHLPENPTVVEIGCGEGHLLRSLAKKIPTGKFIGFDPNAEIETEGALIDARAMLFEPGTHLAELQPDLIIS 1135
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A517V6L8_9PLAN (TPR repeat-containing protein YrrB n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517V6L8_9PLAN)

HSP 1 Score: 357 bits (916), Expect = 2.620e-111
Identity = 178/230 (77.39%), Postives = 195/230 (84.78%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTI---PEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FEDI+TVREMESFFE++L+++    P+   S +    D  K+  MDA   Q+   D+  ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQS  +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQ V DLIA  LPENP VVEIGCGEGHL+RSLAKKIP GKFIGFDPNAEIETE GLIEAR MLFEPG HLAEL+PDLIIS
Sbjct:  905 VFEDINTVREMESFFESALKHSDTQQPDKQSSLSLNSSDINKEPSMDASLNQTGNADYIKILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQSCEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQNVCDLIAVRLPENPIVVEIGCGEGHLLRSLAKKIPWGKFIGFDPNAEIETEDGLIEARAMLFEPGLHLAELKPDLIIS 1134
[Close]
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Match: A0A3D3R525_9PLAN (Protein O-GlcNAc transferase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R525_9PLAN)

HSP 1 Score: 354 bits (908), Expect = 3.560e-110
Identity = 174/230 (75.65%), Postives = 196/230 (85.22%), Query Frame = 1 
Query:    1 IFEDISTVREMESFFETSLQNTI---PEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILNSAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLPENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTMLFEPGQHLAELQPDLIIS 681
            +FED++T+RE+E+FFE++L+++    P +  S + +  +  K+  MDA   Q    DH  ILNSAM+NYTCPACGYHIAVQF+DGGLLPLTTLAWPQS  +AQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQ V DLIA  LPENP VVEIGCGEGHL+RSLAKKIP GKFIGFDPNAEIETE GLIEAR MLFEPG+HLAEL+PDLIIS
Sbjct:  905 VFEDVNTIRELETFFESALKHSEFQQPVNQSSFSLSSSNISKEPSMDASLNQPGNADHIKILNSAMQNYTCPACGYHIAVQFYDGGLLPLTTLAWPQSCEEAQAMERLPHDFMRCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQNVCDLIAIRLPENPIVVEIGCGEGHLLRSLAKKIPWGKFIGFDPNAEIETEDGLIEARAMLFEPGRHLAELKPDLIIS 1134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100000.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PGN0_9PLAN4.450e-15099.56Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID... [more]
A0A517ZZU9_9PLAN6.240e-13388.99Protein O-GlcNAc transferase n=2 Tax=Gimesia panar... [more]
A0A6I6ACV5_9PLAN2.580e-12787.22Tetratricopeptide repeat protein n=1 Tax=Gimesia b... [more]
A0A350K8L9_9PLAN6.630e-11775.65Glyco_transf_41 domain-containing protein (Fragmen... [more]
A0A518I589_9PLAN7.450e-11478.26Protein O-GlcNAc transferase n=2 Tax=Gimesia TaxID... [more]
A0A2E2BXP5_9PLAN1.030e-11378.70Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517X3A2_9PLAN1.980e-11276.09Protein O-GlcNAc transferase n=1 Tax=Gimesia aquar... [more]
A0A517W4B8_9PLAN2.740e-11275.65TPR repeat-containing protein YrrB n=1 Tax=Gimesia... [more]
A0A517V6L8_9PLAN2.620e-11177.39TPR repeat-containing protein YrrB n=2 Tax=Gimesia... [more]
A0A3D3R525_9PLAN3.560e-11075.65Protein O-GlcNAc transferase n=2 Tax=Gimesia TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100000contigM-pyrifera_M_contig100000:3..683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score342.0
Seed ortholog evalue2e-91
Seed eggNOG ortholog344747.PM8797T_07819
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568,ko:K19127,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR04988,R05614,R08769,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117
Hectar predicted targeting categoryother localisation
EggNOG free text desc.O-linked N-acetylglucosamine transferase SPINDLY family
EggNOG OGs2IYXB@203682,COG0457@1,COG0457@2,COG2227@1,COG2227@2,COG3914@1,COG3914@2
EC2.1.1.222,2.1.1.64
COG Functional cat.O
CAZyGT2,GT4
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01005,ko02000,ko02048
Exons1
Model size681
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.4841106-CDS-M-pyrifera_M_contig100000:2..6531622815494.4841106-CDS-M-pyrifera_M_contig100000:2..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100000 3..653 -
1692277437.1109025-CDS-M-pyrifera_M_contig100000:2..6531692277437.1109025-CDS-M-pyrifera_M_contig100000:2..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100000 3..653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.4984138-UTR-M-pyrifera_M_contig100000:653..6831622815494.4984138-UTR-M-pyrifera_M_contig100000:653..683Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100000 654..683 -
1692277437.1542718-UTR-M-pyrifera_M_contig100000:653..6831692277437.1542718-UTR-M-pyrifera_M_contig100000:653..683Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100000 654..683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100000.7.1prot_M-pyrifera_M_contig100000.7.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100000 3..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100000.7.1

>prot_M-pyrifera_M_contig100000.7.1 ID=prot_M-pyrifera_M_contig100000.7.1|Name=mRNA_M-pyrifera_M_contig100000.7.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
MESFFETSLQNTIPEHSPSSAQTCLDTEKDLGMDAVPQQSEATDHSNILN
SAMRNYTCPACGYHIAVQFFDGGLLPLTTLAWPQSTSDAQAMERLPHDFM
RCVDCGHISNAAFDYAKVPYSDKPNLMFNKGAIWSEHLQKVSDLIAASLP
ENPTVVEIGCGEGHLIRSLAKKIPSGKFIGFDPNAEIETEGGLIEARTML
FEPGQHLAELQPDLIIS
back to top

mRNA from alignment at M-pyrifera_M_contig100000:3..683-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100000.7.1 ID=mRNA_M-pyrifera_M_contig100000.7.1|Name=mRNA_M-pyrifera_M_contig100000.7.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=681bp|location=Sequence derived from alignment at M-pyrifera_M_contig100000:3..683- (Macrocystis pyrifera P11B4 male)
ATCTTTGAAGACATCAGCACGGTCCGAGAAATGGAATCTTTCTTCGAAAC
CTCGCTGCAAAATACGATTCCGGAACATTCTCCTTCATCAGCACAGACCT
GTTTGGACACGGAAAAGGACCTCGGCATGGATGCTGTACCTCAACAGTCA
GAAGCGACTGACCATTCAAATATTCTCAACTCGGCTATGCGGAACTACAC
CTGCCCGGCCTGTGGATACCACATCGCGGTTCAGTTTTTCGATGGCGGTC
TGCTGCCCCTGACGACACTGGCCTGGCCTCAAAGCACCTCGGATGCACAG
GCCATGGAACGGTTACCCCATGACTTCATGCGATGCGTGGACTGTGGCCA
TATCTCAAATGCGGCTTTTGATTATGCCAAGGTGCCATATTCGGACAAAC
CCAACCTGATGTTTAACAAGGGAGCCATCTGGTCGGAACATCTGCAGAAG
GTCTCAGATCTGATCGCTGCCAGCCTGCCTGAAAATCCGACCGTGGTGGA
AATCGGCTGCGGGGAAGGACACCTTATCAGATCGCTGGCAAAGAAAATTC
CCTCCGGGAAATTTATCGGTTTCGATCCGAATGCGGAAATCGAAACGGAA
GGTGGGCTGATTGAAGCGCGCACCATGCTGTTTGAGCCCGGTCAACATCT
GGCAGAACTGCAGCCCGACCTGATCATCAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100000:3..683-

>mRNA_M-pyrifera_M_contig100000.7.1 ID=mRNA_M-pyrifera_M_contig100000.7.1|Name=mRNA_M-pyrifera_M_contig100000.7.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig100000:3..683- (Macrocystis pyrifera P11B4 male)
ATGGAATCTTTCTTCGAAACCTCGCTGCAAAATACGATTCCGGAACATTC
TCCTTCATCAGCACAGACCTGTTTGGACACGGAAAAGGACCTCGGCATGG
ATGCTGTACCTCAACAGTCAGAAGCGACTGACCATTCAAATATTCTCAAC
TCGGCTATGCGGAACTACACCTGCCCGGCCTGTGGATACCACATCGCGGT
TCAGTTTTTCGATGGCGGTCTGCTGCCCCTGACGACACTGGCCTGGCCTC
AAAGCACCTCGGATGCACAGGCCATGGAACGGTTACCCCATGACTTCATG
CGATGCGTGGACTGTGGCCATATCTCAAATGCGGCTTTTGATTATGCCAA
GGTGCCATATTCGGACAAACCCAACCTGATGTTTAACAAGGGAGCCATCT
GGTCGGAACATCTGCAGAAGGTCTCAGATCTGATCGCTGCCAGCCTGCCT
GAAAATCCGACCGTGGTGGAAATCGGCTGCGGGGAAGGACACCTTATCAG
ATCGCTGGCAAAGAAAATTCCCTCCGGGAAATTTATCGGTTTCGATCCGA
ATGCGGAAATCGAAACGGAAGGTGGGCTGATTGAAGCGCGCACCATGCTG
TTTGAGCCCGGTCAACATCTGGCAGAACTGCAGCCCGACCTGATCATCAG
TATGGAATCTTTCTTCGAAACCTCGCTGCAAAATACGATTCCGGAACATT
CTCCTTCATCAGCACAGACCTGTTTGGACACGGAAAAGGACCTCGGCATG
GATGCTGTACCTCAACAGTCAGAAGCGACTGACCATTCAAATATTCTCAA
CTCGGCTATGCGGAACTACACCTGCCCGGCCTGTGGATACCACATCGCGG
TTCAGTTTTTCGATGGCGGTCTGCTGCCCCTGACGACACTGGCCTGGCCT
CAAAGCACCTCGGATGCACAGGCCATGGAACGGTTACCCCATGACTTCAT
GCGATGCGTGGACTGTGGCCATATCTCAAATGCGGCTTTTGATTATGCCA
AGGTGCCATATTCGGACAAACCCAACCTGATGTTTAACAAGGGAGCCATC
TGGTCGGAACATCTGCAGAAGGTCTCAGATCTGATCGCTGCCAGCCTGCC
TGAAAATCCGACCGTGGTGGAAATCGGCTGCGGGGAAGGACACCTTATCA
GATCGCTGGCAAAGAAAATTCCCTCCGGGAAATTTATCGGTTTCGATCCG
AATGCGGAAATCGAAACGGAAGGTGGGCTGATTGAAGCGCGCACCATGCT
GTTTGAGCCCGGTCAACATCTGGCAGAACTGCAGCCCGACCTGATCATCA
GT
back to top