mRNA_M-pyrifera_M_contig103044.640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103044.640.1
Unique NamemRNA_M-pyrifera_M_contig103044.640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A7X3RBC1_9BACT (Sigma-54 factor interaction domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3RBC1_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 7.110e-10
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   52 VMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERFVHL 282
            + S+ ED  G VW G  +   G W YAD   GSF     +  LGG +  +  DR+GR+WF T+EGV Y++GE F  L
Sbjct:  198 IYSVGEDHTGKVWIGRFRHREGLWCYAD---GSFQSVMVD--LGGGLRKIQCDRKGRMWFSTSEGVIYQDGEGFSRL 269          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A6L7VZV7_9BACT (Sigma-54 factor interaction domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7VZV7_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.190e-8
Identity = 29/71 (40.85%), Postives = 37/71 (52.11%), Query Frame = 1
Query:   61 IAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERF 273
            + +D  G VW G      G W YAD      T+      LGG +  +  DREGR+WF T+EGV YK+G  F
Sbjct:  224 VCQDYTGKVWIGRLNHRDGLWCYADG-----TFQSVRIDLGGGLRKIQCDREGRMWFCTSEGVLYKDGNEF 289          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A7X3UKS6_9BACT (AAA domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X3UKS6_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 7.620e-8
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   58 SIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERF 273
            ++ +D  G VW G +Q+  G W YAD A     +   E  LGG +  +  DREGR+WF T+ GV Y  G+ F
Sbjct:  200 TVGKDHTGKVWIGRSQRRDGLWCYADGA-----FQSVEVNLGGELRKIQCDREGRMWFCTSTGVLYWNGDGF 266          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A6L7WCJ5_9BACT (AAA domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7WCJ5_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.620e-7
Identity = 28/72 (38.89%), Postives = 37/72 (51.39%), Query Frame = 1
Query:   58 SIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERF 273
            ++  D  G VW G   Q  G WRY D      T+      LGG +  +  DREGR+WF T+EGV Y+  + F
Sbjct:  200 AVGRDRTGHVWIGRYGQRDGLWRYTDG-----TFHRVPVDLGGNLRKIQCDREGRMWFCTSEGVLYQNPDEF 266          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A1H7L9B0_9BURK (Histidine kinase n=1 Tax=Duganella sp. CF402 TaxID=1855289 RepID=A0A1H7L9B0_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 5.030e-7
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    7 HLQLAERSMHVGLGRVMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAE--HGL-GGAVPSLDVDREGRLWFGTTEG---VYYKEGERFVHLGKG 291
            HL  AER     +   MSIA+D +G +WF   Q G G W    +      +F AE  H L G  V +L VDR+GRLW GTT G   +Y K+ ERFV    G
Sbjct:   80 HLVPAERGFPNPI--TMSIAQDGDGFIWFA-TQSGLGRWDGYRMRN---FFFNAEDNHSLPGDFVQTLHVDRQGRLWLGTTTGGVAMYDKQTERFVRYPAG 174          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A7X4FLJ4_9BACT (AAA domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FLJ4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 6.760e-7
Identity = 28/79 (35.44%), Postives = 40/79 (50.63%), Query Frame = 1
Query:   46 GRVMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERFVHL 282
            G   ++ +D  G VW G        W YAD      T+   +  LGG +  +  DREGR+WF T+EGV Y++G+ F   
Sbjct:  209 GTAYALDKDHTGKVWIGRFGNRDELWCYADG-----TFQSVQVDLGGWLRKIQCDREGRMWFSTSEGVLYQDGDGFCRF 282          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A1E7X7L5_9BURK (Two component regulator propeller n=2 Tax=Duganella phyllosphaerae TaxID=762836 RepID=A0A1E7X7L5_9BURK)

HSP 1 Score: 55.5 bits (132), Expect = 8.740e-7
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    7 HLQLAERSMHVGLGRVMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAE--HGL-GGAVPSLDVDREGRLWFGTT-EGV--YYKEGERFVHLGKG 291
            HL  AER     +  VMS+A+D +G +WFG +Q G G W    +      YF A   H L G  + +L VDR+GRLW GT+ +G+  Y ++ ERFV +  G
Sbjct:   43 HLSPAERDFPSPV--VMSVAQDGDGFMWFG-SQAGLGRWDGYQMRN---FYFDANDPHSLPGDFIQTLHVDRQGRLWVGTSIDGLARYDRQNERFVRVAAG 137          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A0Q4PBY0_9BURK (Histidine kinase n=4 Tax=unclassified Duganella TaxID=2636909 RepID=A0A0Q4PBY0_9BURK)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    7 HLQLAERSMHVGLGRVMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAE--HGL-GGAVPSLDVDREGRLWFGTT-EGV--YYKEGERFVHLGKG 291
            HL  AER+    +  VMS+A+D +G +WFG +Q G G W    +      YF A   H L G  + +L VDR+GRLW GT+ +G+  Y K  ERFV +  G
Sbjct:   20 HLAPAERNFPSPV--VMSMAQDGDGFLWFG-SQAGLGRWDGYQMRN---FYFDANDPHSLPGDFIQTLHVDRQGRLWVGTSIDGLARYDKHSERFVRVAAG 114          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A7X4FFB4_9BACT (AAA domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FFB4_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 3.210e-6
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   58 SIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERF 273
            ++ +D  G VW G  +     W YAD   GSF    A+  L G +  +  D EGR+WF T++G++Y++G+ F
Sbjct:  205 AVGQDHTGKVWIGYREYENKLWCYAD---GSFQSVQAD--LEGTLRKIQCDSEGRMWFSTSQGMFYQDGDGF 271          
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Match: A0A7X4FEM6_9BACT (AAA domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FEM6_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.990e-6
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 1
Query:   58 SIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGLGGAVPSLDVDREGRLWFGTTEGVYYKEGERF 273
            ++ +D  G+VW G      G W Y D   G+F     +  L   +  +  DREGR+WFGT+ GV Y++G+ F
Sbjct:  197 AVGQDDTGNVWIGQRGPQNGLWCYTD---GNFQPVQVD--LDSRLRKIQCDREGRMWFGTSNGVLYQDGDGF 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103044.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7X3RBC1_9BACT7.110e-1042.86Sigma-54 factor interaction domain-containing prot... [more]
A0A6L7VZV7_9BACT2.190e-840.85Sigma-54 factor interaction domain-containing prot... [more]
A0A7X3UKS6_9BACT7.620e-840.28AAA domain-containing protein n=1 Tax=Candidatus P... [more]
A0A6L7WCJ5_9BACT3.620e-738.89AAA domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A1H7L9B0_9BURK5.030e-742.57Histidine kinase n=1 Tax=Duganella sp. CF402 TaxID... [more]
A0A7X4FLJ4_9BACT6.760e-735.44AAA domain-containing protein n=2 Tax=Gemmatimonad... [more]
A0A1E7X7L5_9BURK8.740e-740.59Two component regulator propeller n=2 Tax=Duganell... [more]
A0A0Q4PBY0_9BURK1.280e-641.58Histidine kinase n=4 Tax=unclassified Duganella Ta... [more]
A0A7X4FFB4_9BACT3.210e-636.11AAA domain-containing protein n=2 Tax=Gemmatimonad... [more]
A0A7X4FEM6_9BACT5.990e-636.11AAA domain-containing protein n=2 Tax=Gemmatimonad... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103044contigM-pyrifera_M_contig103044:3..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103044.640.1prot_M-pyrifera_M_contig103044.640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103044 33..398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.9816873-UTR-M-pyrifera_M_contig103044:2..321622815534.9816873-UTR-M-pyrifera_M_contig103044:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103044 3..32 +
1692277453.2782238-UTR-M-pyrifera_M_contig103044:2..321692277453.2782238-UTR-M-pyrifera_M_contig103044:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103044 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.0007439-CDS-M-pyrifera_M_contig103044:32..1271622815535.0007439-CDS-M-pyrifera_M_contig103044:32..127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103044 33..127 +
1692277453.2866483-CDS-M-pyrifera_M_contig103044:32..1271692277453.2866483-CDS-M-pyrifera_M_contig103044:32..127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103044 33..127 +
1622815535.0152678-CDS-M-pyrifera_M_contig103044:226..3981622815535.0152678-CDS-M-pyrifera_M_contig103044:226..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103044 227..398 +
1692277453.294681-CDS-M-pyrifera_M_contig103044:226..3981692277453.294681-CDS-M-pyrifera_M_contig103044:226..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103044 227..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103044.640.1

>prot_M-pyrifera_M_contig103044.640.1 ID=prot_M-pyrifera_M_contig103044.640.1|Name=mRNA_M-pyrifera_M_contig103044.640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MHVGLGRVMSIAEDAEGDVWFGMAQQGGGAWRYADVAGGSFTYFGAEHGL
GGAVPSLDVDREGRLWFGTTEGVYYKEGERFVHLGKGE*
back to top

mRNA from alignment at M-pyrifera_M_contig103044:3..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103044.640.1 ID=mRNA_M-pyrifera_M_contig103044.640.1|Name=mRNA_M-pyrifera_M_contig103044.640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig103044:3..398+ (Macrocystis pyrifera P11B4 male)
ACGGCGCACTTGCAGTTGGCCGAGCGGTCGATGCACGTTGGCCTGGGGCG CGTGATGTCGATCGCTGAGGACGCGGAGGGCGATGTGTGGTTCGGGATGG CGCAGCAGGGCGGCGGGGCTTGGCGGTGGAGTGCGGAGGGGGCGGCGAAG GCCGGCGGTTCGGAGGGGAGCGCCATGCCTGCTGCGGGAGCGGGGGATGC GCTCGAGCGCTTCGTGCCCGCGAGCTACGCGGACGTCGCCGGCGGTTCGT TCACGTACTTTGGCGCGGAGCACGGCTTGGGCGGCGCGGTCCCGAGCCTG GACGTGGACCGCGAGGGCCGCTTGTGGTTCGGGACGACCGAGGGCGTGTA TTACAAGGAAGGGGAGCGCTTCGTGCACCTGGGCAAGGGGGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103044:3..398+

>mRNA_M-pyrifera_M_contig103044.640.1 ID=mRNA_M-pyrifera_M_contig103044.640.1|Name=mRNA_M-pyrifera_M_contig103044.640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig103044:3..398+ (Macrocystis pyrifera P11B4 male)
ATGCACGTTGGCCTGGGGCGCGTGATGTCGATCGCTGAGGACGCGGAGGG
CGATGTGTGGTTCGGGATGGCGCAGCAGGGCGGCGGGGCTTGGCGATGCA
CGTTGGCCTGGGGCGCGTGATGTCGATCGCTGAGGACGCGGAGGGCGATG
TGTGGTTCGGGATGGCGCAGCAGGGCGGCGGGGCTTGGCGCTACGCGGAC
GTCGCCGGCGGTTCGTTCACGTACTTTGGCGCGGAGCACGGCTTGGGCGG
CGCGGTCCCGAGCCTGGACGTGGACCGCGAGGGCCGCTTGTGGTTCGGGA
CGACCGAGGGCGTGTATTACAAGGAAGGGGAGCGCTTCGTGCACCTGGGC
AAGGGGGAGTAGCTACGCGGACGTCGCCGGCGGTTCGTTCACGTACTTTG
GCGCGGAGCACGGCTTGGGCGGCGCGGTCCCGAGCCTGGACGTGGACCGC
GAGGGCCGCTTGTGGTTCGGGACGACCGAGGGCGTGTATTACAAGGAAGG
GGAGCGCTTCGTGCACCTGGGCAAGGGGGAGTAG
back to top