mRNA_M-pyrifera_M_contig13388.5945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13388.5945.1
Unique NamemRNA_M-pyrifera_M_contig13388.5945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13388.5945.1 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 7.040e-63
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 1 
Query:    7 KAFAELVPKPEVDAMAVELGKHKDGKGVDSGGLPVPPSVAIDLSACQVAFKPDGKSDATFEITEIKPARGVKGVFKDYEETKFTLRGRSQEAMVDWVCEIKGMGRAGLQAMS 342
            +AFAELVPKPEV AMAVELGKHKDGKGVDSGGLPVPPSVAIDLSACQV+FKPDGKSDATFEITEIKP RGVK VFKD+EETKFTLRGRSQEAMVDWVCEIK MGRAG++A+S
Sbjct:  532 EAFAELVPKPEVGAMAVELGKHKDGKGVDSGGLPVPPSVAIDLSACQVSFKPDGKSDATFEITEIKPTRGVKTVFKDFEETKFTLRGRSQEAMVDWVCEIKEMGRAGMKAVS 643
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13388.5945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNW9_ECTSI7.040e-6391.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13388contigM-pyrifera_M_contig13388:5504..8166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2.2e-52
Seed eggNOG ortholog2880.D8LNW9
Hectar predicted targeting categoryother localisation
EggNOG OGs28I9V@1,2QQK9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size351
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13388.5945.1prot_M-pyrifera_M_contig13388.5945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13388 5504..8166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.9576657-CDS-M-pyrifera_M_contig13388:5503..56201622815815.9576657-CDS-M-pyrifera_M_contig13388:5503..5620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 5504..5620 -
1692277584.8723755-CDS-M-pyrifera_M_contig13388:5503..56201692277584.8723755-CDS-M-pyrifera_M_contig13388:5503..5620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 5504..5620 -
1622815815.9682791-CDS-M-pyrifera_M_contig13388:7161..72481622815815.9682791-CDS-M-pyrifera_M_contig13388:7161..7248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 7162..7248 -
1692277584.8851373-CDS-M-pyrifera_M_contig13388:7161..72481692277584.8851373-CDS-M-pyrifera_M_contig13388:7161..7248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 7162..7248 -
1622815816.0140698-CDS-M-pyrifera_M_contig13388:8019..81661622815816.0140698-CDS-M-pyrifera_M_contig13388:8019..8166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 8020..8166 -
1692277584.895065-CDS-M-pyrifera_M_contig13388:8019..81661692277584.895065-CDS-M-pyrifera_M_contig13388:8019..8166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13388 8020..8166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13388.5945.1

>prot_M-pyrifera_M_contig13388.5945.1 ID=prot_M-pyrifera_M_contig13388.5945.1|Name=mRNA_M-pyrifera_M_contig13388.5945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
SEKAFAELVPKPEVDAMAVELGKHKDGKGVDSGGLPVPPSVAIDLSACQV
AFKPDGKSDATFEITEIKPARGVKGVFKDYEETKFTLRGRSQEAMVDWVC
EIKGMGRAGLQAMSGK*
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mRNA from alignment at M-pyrifera_M_contig13388:5504..8166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13388.5945.1 ID=mRNA_M-pyrifera_M_contig13388.5945.1|Name=mRNA_M-pyrifera_M_contig13388.5945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2663bp|location=Sequence derived from alignment at M-pyrifera_M_contig13388:5504..8166- (Macrocystis pyrifera P11B4 male)
TCGGAGAAGGCGTTTGCCGAGCTAGTGCCCAAGCCGGAAGTCGACGCAAT
GGCGGTGGAGCTCGGAAAGCACAAAGACGGAAAGGGTGTCGACTCTGGGG
GGTTGCCCGTGCCCCCCTCGGTTGCCATCGACCTTAGCGCGTGCCAGGTG
GGTGGCTGGGTGGGTGGGTGTGGTGGATAGGGTGGGTGGGTGGGGTGGGT
GGGTGGATAGGTGGATGGGTGGGTAGGTGGGTGAGTGGGTGGGTGGGGGG
TAGATGTTGTTGTTGTTGTTTCTTTTTTTGTCTCTTTCGGTTGTTGTACT
GCTTTTCCGATGCCAGCTTAACCCCAAGCGTGGTATTTACTACATTGTGT
TTAATAATTTTAGTACTGCAGTCCCGTTTCGGGCACAAACCACTCAATCT
ATGAGTAGTTTGTCCCCAAAACGGGACTGCAGTACTATTACGGGGGACCA
TAGTAAATAGGACCAAATATTGTTAGTAAACATAGGTAAATATATAGGTT
TTGTGTGTACCGTAGGTCCTGTTTACTATGGTCCCCCGTAATAAAAGGGC
TATGGTGCTTCAACTTCTCGTGCTACGATAGAGGCAGCAGTTTTTGGACA
ATTTTGTTTTCTGACTGACCAGGCTCCTTGGCCCAAGTTCGTTCGAATAC
AAGTACCATTTTTTTTTTTACAGTTTTGCTCGTGATGTAGCTAGGCTATG
GATGCTGATCGTCGGGCTGCACTTTCAACTTTTCTCTGAACTCAATTTTA
GGGTGGGGTACAGAGCTCAATTTAAAGGTGGGGTATAGAGCTCCCATACG
ATAATCAAGTGAGAAGAGTCTCGGAGAACTTGGGGTGCACCCCTGCCCAC
CGTAGCAGGCGTTTGACACACTGTAGTTTCCCCTGTTTTTTTTTCCCCCC
ATCGGCCGTCACCTTCAGGTGGCCTTCAAGCCGGACGGGAAGAGCGACGC
GACGTTCGAGATCACCGAAATCAAGCCAGCCAGGGGGGTGAAGGGCGTCT
TCAAGGTGAGCCTCGGCGGCGACGGTAGCGGCGGCAGCGGTGGCAGCAGT
AGCAACGACAGCACCATTAGCAGCGGCGTTGACAGCATTAGCGGCCAACA
GCATTTTCATTTGTCATTAGCGGCAGCAATAGAAATATTAGCATTGCTAT
TTGCAGCAGCATTAGCAGGAGCGGGAACTTTAGTCGGAGCTTCAGCAGCA
TTAGCGTTAGCACCAGCACTAGCAGCGAGAGCGACAGCATTGGCAGCTAT
TACGGGCGACCATAGTAAATAAGACCAAATATTGTTAGTAAACATATGTA
AATATATGGGTGTTTGTGTACACCGTAGGTCCTATTAACTATGGTCCCCC
GTAATAGAGCAACAGACAGTCGCGGCGGTAAAGTAGTAGCAGCAGGCAAG
GGTGGCGGTGGCGGCGGCTGCCGTCATATCGCGCCAGTCGTGTGTTAGGT
CATCACACGAAGCAACCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCC
ACACCCCACCCTCCGCCAGCCGGGCCCAGCAACACCCCGCCCCACACCCN
NNNNNNNNNGGCGGAAAGGAGGAGCGACCGTCGAGGGTGGCGGGCGACTG
CGCCGCCGTCAAACCGCCCCCCGTGGTTGTTTGGTCACCACACCAAGCCA
CCCCCCCCCCCCCCCCCCGCCCCTTTCTCCCCGGAAACACCTACTTGCAC
ACCGGGTGTGCAAACATGACCCCTGCACACGCCCTTAGTATATTTTGGTT
TTATTATAGGCTACTTATTATAGGGGGTGCTACATCTCTGAACCCAACCC
TTACCCTGAAACCCCCCAAACACTTAAACCAGCATAGTATGACCTCACCT
TGGGAGGCCGTGGGGTGTGCAGTGTCATATTTCAAACCCGATTAGGAATT
AGGCGTCACCCGACATGAGGATAGCTCTCCCTTGAGACGGTAGCCCGGCA
TGTTCGTTTTTTATCCTCGCCGTATCCTAAGAGAGGCTTATCGTCAGAGC
ACTGTGGTCGATGTTGTCTTCTGCTAGTGTTTCCGAGAGGGAGGGGAGGG
GGGGGGGGGGGGGGAGGTGGCGCAAAGTGTTTTTGGGGGTGGTTATTGCT
GTCGCTTTTTTTGTTGTTTTTTGACCGTCCCACCCCTAAGTTAAGATGAG
CAACTCCCNNNNNNNNNNGGTTGTGTGGTTGGGGTTTGGGGGGGGTGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCATGCG
TCAAAGTCGTTTTGGATGGTGTTATTGCTGCTGCTGCTGTTGTTGATTTG
TCGCCGTCATTGCCATCAGTTTATTTCTGTTCAGTCACACCACACCGCGA
CAGTGTACTTTAGGTCGAAAGCATCAGTCGCCGCTCTAAACCGCAGCCCT
CTCCTCCCCCCCGCCCTCTCTGCCACCCCCCCCCTCCCCCCCCCCCACCC
GCTACTCTCTGTCCCTTTATATCCCATATGTTTATCTCTCCCTTCCTCCC
TTCCGCTCTCTCCGTCTCCCCATTGTCTCTCCCGCGCGTCGCGTAGGACT
ACGAAGAGACGAAGTTCACCCTCAGGGGACGGTCCCAGGAAGCAATGGTT
GATTGGGTCTGCGAGATTAAGGGAATGGGGCGCGCGGGATTGCAGGCAAT
GTCGGGCAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13388:5504..8166-

>mRNA_M-pyrifera_M_contig13388.5945.1 ID=mRNA_M-pyrifera_M_contig13388.5945.1|Name=mRNA_M-pyrifera_M_contig13388.5945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig13388:5504..8166- (Macrocystis pyrifera P11B4 male)
TCGGAGAAGGCGTTTGCCGAGCTAGTGCCCAAGCCGGAAGTCGACGCAAT
GGCGGTGGAGCTCGGAAAGCACAAAGACGGAAAGGGTGTCGACTCTGGGG
GGTTGCCCGTGCCCCCCTCGGTTGCCATCGACCTTAGCGCGTGCCAGTCG
GAGAAGGCGTTTGCCGAGCTAGTGCCCAAGCCGGAAGTCGACGCAATGGC
GGTGGAGCTCGGAAAGCACAAAGACGGAAAGGGTGTCGACTCTGGGGGGT
TGCCCGTGCCCCCCTCGGTTGCCATCGACCTTAGCGCGTGCCAGGTGGCC
TTCAAGCCGGACGGGAAGAGCGACGCGACGTTCGAGATCACCGAAATCAA
GCCAGCCAGGGGGGTGAAGGGCGTCTTCAAGGTGGCCTTCAAGCCGGACG
GGAAGAGCGACGCGACGTTCGAGATCACCGAAATCAAGCCAGCCAGGGGG
GTGAAGGGCGTCTTCAAGGACTACGAAGAGACGAAGTTCACCCTCAGGGG
ACGGTCCCAGGAAGCAATGGTTGATTGGGTCTGCGAGATTAAGGGAATGG
GGCGCGCGGGATTGCAGGCAATGTCGGGCAAGTAAGACTACGAAGAGACG
AAGTTCACCCTCAGGGGACGGTCCCAGGAAGCAATGGTTGATTGGGTCTG
CGAGATTAAGGGAATGGGGCGCGCGGGATTGCAGGCAATGTCGGGCAAGT
AA
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