mRNA_M-pyrifera_M_contig13296.5906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13296.5906.1
Unique NamemRNA_M-pyrifera_M_contig13296.5906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: D7FT80_ECTSI (DNA replication licensing factor MCM6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT80_ECTSI)

HSP 1 Score: 659 bits (1701), Expect = 5.390e-230
Identity = 342/354 (96.61%), Postives = 348/354 (98.31%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAEQVSGGYNIRDETDEAGGGADGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L +RTAFLASSVLPAEQVSGGYNIRD++DEAG GADGAEELTEEEGREILEMKNSSNIY DMVNS+APTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQ ISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNP IT EGR+TMVECYRALR+NDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR
Sbjct:  304 LTYRTAFLASSVLPAEQVSGGYNIRDDSDEAGAGADGAEELTEEEGREILEMKNSSNIYADMVNSVAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQ-ISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPAITPEGRKTMVECYRALRENDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 656
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: A0A836CNJ8_9STRA (DNA replication licensing factor MCM6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ8_9STRA)

HSP 1 Score: 529 bits (1363), Expect = 3.890e-179
Identity = 283/358 (79.05%), Postives = 310/358 (86.59%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAE-QVSGGYNIRDETDEAG--GGADGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEA-LDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            + +RTAFLA S LPAE    GG+NIRD+ D A   G A  A +L+EEE +EI +M  + ++Y  +  SIAP VF H EVKRGVLLML GGVHK T EGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRA+F SGKASSAAGLTASV+KDHETGEFC+EAGALMLADNGICCIDEFDKMD  DQVAIHEAMEQQTISITKAGIQATLNART+ILAAANPLYGRYD SKTL+ANVQ ISAPIMSRFDLFFVVLDECDET D++IAQHIIRVHQN+  A LDPPFT  QMQRYIRFARRLNP I  +G++ MVECYRALRQND +GRN+ AYRITVRQLESM+RLSEALARLHLDD+VR
Sbjct:  311 MTYRTAFLACSALPAEGPAGGGHNIRDDPDAAAAAGPAGLAADLSEEERQEIHDMGRTPDLYKKLCASIAPAVFSHMEVKRGVLLMLFGGVHKSTPEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAVFASGKASSAAGLTASVIKDHETGEFCVEAGALMLADNGICCIDEFDKMDDTDQVAIHEAMEQQTISITKAGIQATLNARTAILAAANPLYGRYDTSKTLRANVQ-ISAPIMSRFDLFFVVLDECDETMDYSIAQHIIRVHQNQDPAVLDPPFTKEQMQRYIRFARRLNPYIGPDGQKAMVECYRALRQNDSLGRNRAAYRITVRQLESMVRLSEALARLHLDDEVR 667
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: B7FXF9_PHATC (DNA replication licensing factor MCM6 (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXF9_PHATC)

HSP 1 Score: 468 bits (1204), Expect = 1.990e-158
Identity = 238/316 (75.32%), Postives = 274/316 (86.71%), Query Frame = 1 
Query:  118 ELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP-RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            E T +E  EI EMK+SS +Y DMV SI PT FGH EVK+G+LLMLLGGVHK T +GIKLRGDINVC+VGDPSTAKSQFLKYVH FLP RA++TSGKASSAAGLTA+V +D +TGE+CIEAGALMLADNGICCIDEFDKMD  DQVAIHEAMEQQTISITKAGIQATLNAR SILAAANP+YGRYDR+KTLKANV  +SAPI+SRFDLFFVVLDECD  +D  +AQHI++VH+ + EA+ PP+T  QMQRYIRFAR L P IT E ++ +V+CYR LRQ D +GR++TAYRITVRQLESMIRLSEA+ARLH D +++
Sbjct:  313 EFTRQERNEIREMKSSSRLYQDMVESICPTTFGHKEVKKGLLLMLLGGVHKTTTDGIKLRGDINVCVVGDPSTAKSQFLKYVHAFLPSRAVYTSGKASSAAGLTAAVQRDQDTGEYCIEAGALMLADNGICCIDEFDKMDPNDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPIYGRYDRTKTLKANVA-LSAPILSRFDLFFVVLDECDPDSDRRVAQHILKVHRCQEEAVQPPYTKEQMQRYIRFARTLYPKITPESQRVLVDCYRKLRQGDTLGRSRTAYRITVRQLESMIRLSEAMARLHCDPEIQ 627
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: A0A7S3V4K9_9STRA (DNA replication licensing factor MCM6 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4K9_9STRA)

HSP 1 Score: 475 bits (1223), Expect = 2.660e-157
Identity = 259/375 (69.07%), Postives = 300/375 (80.00%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAEQVSGGYNIRDETDEAG--------GGAD--GAE----------ELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP-RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L ++T F+A+SVL  + ++  Y  +     AG        GGA+  G E          E++++E  EI EMK+SSN+YT MV SI P  FGH EVKRGVLL LLGGVHK TAEGI+LRGDINVCIVGDPS AKSQFLKYVH FLP R+++TSGKASSAAGLTA+V +D +TGE+CIEAGALMLADNGICCIDEFDKMD  DQVAIHEAMEQQTISITKAGIQATLNAR SILAAANP+YGRYDR+KTLKANV  +SAPI+SRFDLFFVVLDECDE  D N+A+HI+ VH+ + +A+D PFT  QMQRYIRFAR +NP IT E ++ MVECYR LRQ D +GR++TAYRITVRQLESM+RLSEALARLH DD VR
Sbjct:  398 LTYKTCFVATSVLSVDALAR-YRNQSAIYSAGAMASFLYGGGANHAGGEDMKTTQEVAMEMSDQERAEIREMKSSSNLYTKMVESICPATFGHQEVKRGVLLQLLGGVHKTTAEGIRLRGDINVCIVGDPSVAKSQFLKYVHAFLPSRSVYTSGKASSAAGLTAAVQRDQDTGEYCIEAGALMLADNGICCIDEFDKMDPVDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPIYGRYDRTKTLKANVA-LSAPILSRFDLFFVVLDECDELQDMNVAKHILSVHRCEEKAVDVPFTKEQMQRYIRFARTINPKITSESQKKMVECYRKLRQGDTLGRSRTAYRITVRQLESMVRLSEALARLHCDDLVR 770
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: B8BT64_THAPS (DNA replication licensing factor MCM6 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT64_THAPS)

HSP 1 Score: 467 bits (1202), Expect = 6.340e-157
Identity = 247/357 (69.19%), Postives = 291/357 (81.51%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAEQ--VSGGYNIRDETDEAGGGADGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP-RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L +RT F+A  VLP++   + GG +     D      + A E TEEE  EI  MK    +Y  +  S+AP+ FGH+EVKRG+LLMLL GVHK T+EGI+LRGDINVCIVGDPSTAKSQFLK+VH FLP R ++TSGKA+SAAGLTA+V++D +TGE+CIEAGALMLADNGICCIDEFDKM+  DQVAIHEAMEQQTISITKAGIQATLNAR SILAAANP++GRYDRSKTL+ANVQ +SAPI+SRFDLFFVVLDECDE AD+N+A+HII VH+     +DPPF+  QM RYIRFAR LNP IT E R+ +V+CYR LRQ D +GR++TAYRITVRQLES+IRLSEALARLH DD V+
Sbjct:  355 LTYRTCFVACCVLPSDLFGLGGGTSGGRGGDNPKSSHEVAMEFTEEEKDEIRRMKGMPRLYDLLAESVAPSTFGHTEVKRGILLMLLSGVHKTTSEGIRLRGDINVCIVGDPSTAKSQFLKFVHAFLPERCVYTSGKAASAAGLTAAVIRDQDTGEYCIEAGALMLADNGICCIDEFDKMEQHDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPIHGRYDRSKTLRANVQ-LSAPILSRFDLFFVVLDECDEVADYNVAKHIIDVHRCDEAVVDPPFSQDQMLRYIRFARTLNPQITEESRRILVDCYRKLRQGDTMGRSRTAYRITVRQLESLIRLSEALARLHCDDVVK 710
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: A0A7S4MR36_9STRA (DNA helicase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MR36_9STRA)

HSP 1 Score: 463 bits (1191), Expect = 1.230e-156
Identity = 236/319 (73.98%), Postives = 275/319 (86.21%), Query Frame = 1 
Query:  112 AEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP--RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            A E +EEE  EI  MK+S  +Y+ MVNSIAPT+FGH EVKRG+LLMLLGGVHK T EGI+LRGD+NVCIVGDPSTAKSQFLKYVH FLP  RA++ SGKASSAAGLTA+V +D +TGE CIEAGALMLADNG+CCIDEFDKMD  DQVAIHEAMEQQTIS+TKAGIQATLNAR S+LAAANP++GRYDR+KTLK NV  +SAPI+SRFDLFFVVLDECDE AD+N+A+HI+ VH+   +A+ PP+ A +M+RYIRFAR L+P I  E ++ +V+CYR LRQ D +GR++TAYRITVRQLESMIRLSEALARLH DD VR
Sbjct:   63 AMEFSEEEREEIRAMKSSPQLYSQMVNSIAPTIFGHQEVKRGILLMLLGGVHKTTLEGIRLRGDVNVCIVGDPSTAKSQFLKYVHSFLPDGRAVYASGKASSAAGLTAAVTRDQDTGENCIEAGALMLADNGVCCIDEFDKMDPNDQVAIHEAMEQQTISVTKAGIQATLNARASVLAAANPIHGRYDRTKTLKTNVA-LSAPILSRFDLFFVVLDECDELADYNVAKHILDVHRCTEDAVRPPYDADRMRRYIRFARTLHPRIVPESQRVLVDCYRRLRQGDAMGRSRTAYRITVRQLESMIRLSEALARLHCDDVVR 380
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: A0A7S2KP81_9STRA (DNA helicase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KP81_9STRA)

HSP 1 Score: 474 bits (1221), Expect = 1.790e-156
Identity = 259/378 (68.52%), Postives = 298/378 (78.84%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLP---AEQVS--GGYNIRDET-----------DEAGGGADG-------AEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP-RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L +RT F+A  VLP   AE+V   G  + RDE              +G G D        A E TEEE  EI  MK  SN+YT +  SIAP  FGHSEVKRG+LLMLL GVHK T+EGI+LRGDINVCIVGDPSTAKSQFLK+VH FLP R ++TSGKA+SAAGLTA+V++D +TGEFCIEAGALMLADNGICCIDEFDKMD  DQVAIHEAMEQQTISITKAGIQATLNAR SILAAANP++GRYDRSKTL+ANVQ +SAPI+SRFDLFFVVLDECD+ AD+N+A+HI+ VH+     +DPPFT  QM RYIRFAR LNP IT E R+ +++CYR LRQ D +GR++TAYRITVRQLES+IRLSEALARLH DD V+
Sbjct:  458 LTYRTCFVACCVLPSDVAERVKRRGEESSRDEGYINESFLFSMGSGSGAGVDTPKTAQEVAMEFTEEEKEEIRMMKGMSNLYTKLTESIAPNTFGHSEVKRGILLMLLSGVHKTTSEGIRLRGDINVCIVGDPSTAKSQFLKFVHSFLPERCVYTSGKAASAAGLTAAVVRDQDTGEFCIEAGALMLADNGICCIDEFDKMDQHDQVAIHEAMEQQTISITKAGIQATLNARASILAAANPIHGRYDRSKTLRANVQ-LSAPILSRFDLFFVVLDECDDVADYNVAKHIVDVHRCDEAVVDPPFTQDQMLRYIRFARTLNPQITEESRRVLIDCYRKLRQGDTMGRSRTAYRITVRQLESLIRLSEALARLHCDDLVK 834
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: K0R7X0_THAOC (DNA helicase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R7X0_THAOC)

HSP 1 Score: 457 bits (1175), Expect = 1.180e-154
Identity = 244/375 (65.07%), Postives = 298/375 (79.47%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAE-----QVSGG--------------YNIRDETDEAGGGA-DGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLP-RAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L +RT F+A  VLP++     +V G               + I +++DE+   A + A E TEEE  EI  MK+  N+Y ++  SIAPT FGH+EVK+G+LLMLLGGVHK T+EGI+LRGDIN+CIVGDPSTAKSQFLK+VHGFLP + ++TSGKA+SAAGLTA+V++D +TGEFCIEAGALMLADNG+CCIDEFDKMD  DQVAIHEAMEQQTIS+TKAGI ATLNAR SILAAANP++GRYDRSKTL+ANVQ +SAPI+SRFDLFFVVLDECD+ AD+N+A+HI+ VH+     + PPF   +M RYIRFAR L+P I  E R+ +V+CYR LRQ D +GR++TAYRITVRQLES+IRLSEALARLH  D V+
Sbjct:   27 LTYRTCFVAGCVLPSDVANRVRVRGSALAENEGYVHESWLFGIGNDSDESPKTAQEVAMEFTEEEKAEIRRMKDMPNLYEELAKSIAPTTFGHTEVKKGILLMLLGGVHKTTSEGIRLRGDINLCIVGDPSTAKSQFLKFVHGFLPEKCVYTSGKAASAAGLTAAVIRDQDTGEFCIEAGALMLADNGVCCIDEFDKMDQHDQVAIHEAMEQQTISLTKAGITATLNARASILAAANPIHGRYDRSKTLRANVQ-LSAPILSRFDLFFVVLDECDDVADYNVAKHILDVHRCDETRVKPPFEQDEMLRYIRFARTLSPRIPEESRRVIVDCYRKLRQGDTMGRSRTAYRITVRQLESLIRLSEALARLHCADIVK 400
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: UPI001E1D5346 (LOW QUALITY PROTEIN: DNA replication licensing factor MCM6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5346)

HSP 1 Score: 454 bits (1167), Expect = 8.210e-151
Identity = 241/353 (68.27%), Postives = 284/353 (80.45%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAEQVSGGYNIRDETDEAGGGADGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQV 1059
            L +R AFLA  + PA+   G   +  E DE        +  ++EE  +I EMKN   +Y  MV SIAP+++GH EVKRG+LLML GGVHK+T EGI LRGDINVCIVGDPSTAKSQFLKYV  FLPRA++TSGKASSAAGLTASV +D +TGEFCIEAGALMLADNGICCIDEFDKMD  DQVAIHEAMEQQTISI+KAGIQATLNARTSILAAANP+YGRYDRS+TLK N+  +SAPIMSRFDLFFVVLD+CDE AD+NIA+ I+ +H+    AL   ++  Q+QRYI  AR+LNPT+T E R  +VE Y++LRQ+D    +++AYRITVRQLES+IRLSEALARLHLDD+V
Sbjct:  244 LVYRLAFLACHIAPADAKPGSL-LPCEEDEDEPMEVLLQSFSKEERDQIKEMKNQPRLYNRMVESIAPSIYGHDEVKRGILLMLFGGVHKKTQEGISLRGDINVCIVGDPSTAKSQFLKYVVNFLPRAVYTSGKASSAAGLTASVARDSDTGEFCIEAGALMLADNGICCIDEFDKMDEKDQVAIHEAMEQQTISISKAGIQATLNARTSILAAANPVYGRYDRSRTLKQNIN-MSAPIMSRFDLFFVVLDDCDENADYNIARFIVGMHKGGVTALPTEYSEGQLQRYISVARKLNPTVTHESRNLLVESYKSLRQSDATRGSRSAYRITVRQLESLIRLSEALARLHLDDEV 594
[Close]
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Match: R7Q8Z2_CHOCR (DNA replication licensing factor MCM6 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8Z2_CHOCR)

HSP 1 Score: 450 bits (1157), Expect = 3.060e-149
Identity = 243/354 (68.64%), Postives = 279/354 (78.81%), Query Frame = 1 
Query:    1 LCHRTAFLASSVLPAEQVSGGYNIRDETDEAGGGADGAEELTEEEGREILEMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRGDINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHETGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVLDECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTITREGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLDDQVR 1062
            L +RTAFLA  V  AE   G  +IR E  +           T EE  EI  MK  S +Y  M  SIAPTV+GH EVKRGVLLML GGVHK+T EGI LRGDIN+C+VGDPSTAKSQFLKYV  FLPRA++TSGKASSAAGLTASV KDHETGEFCIEAGALMLADNGICCIDEFDKMD+ DQVAIHEAMEQQTISI+KAGIQATLNARTSILAAANP+ GRYDRS+TLK N+  +SAPIMSRFDLFFVVLDEC+E++D+N+A+ II +H+  A +    F   Q+QRYI+ AR++NP I  E +  +VE Y+ LRQ D  G  +++YRITVRQLES+IRLSEALARLHLDD VR
Sbjct:  238 LVYRTAFLACHVASAEGKPGATSIRGEEADEETFDSILRSYTREERDEIGAMKAHSRLYQRMAGSIAPTVYGHDEVKRGVLLMLFGGVHKETKEGISLRGDINICVVGDPSTAKSQFLKYVVSFLPRAVYTSGKASSAAGLTASVAKDHETGEFCIEAGALMLADNGICCIDEFDKMDLKDQVAIHEAMEQQTISISKAGIQATLNARTSILAAANPVAGRYDRSRTLKQNLT-MSAPIMSRFDLFFVVLDECEESSDYNVARFIISIHKGGATSQPTEFNEGQLQRYIKAARKINPVILPESKLLLVESYKRLRQADSTGGVRSSYRITVRQLESLIRLSEALARLHLDDCVR 590
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13296.5906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT80_ECTSI5.390e-23096.61DNA replication licensing factor MCM6 n=2 Tax=Ecto... [more]
A0A836CNJ8_9STRA3.890e-17979.05DNA replication licensing factor MCM6 n=1 Tax=Trib... [more]
B7FXF9_PHATC1.990e-15875.32DNA replication licensing factor MCM6 (Fragment) n... [more]
A0A7S3V4K9_9STRA2.660e-15769.07DNA replication licensing factor MCM6 n=1 Tax=Chae... [more]
B8BT64_THAPS6.340e-15769.19DNA replication licensing factor MCM6 n=1 Tax=Thal... [more]
A0A7S4MR36_9STRA1.230e-15673.98DNA helicase n=1 Tax=Odontella aurita TaxID=265563... [more]
A0A7S2KP81_9STRA1.790e-15668.52DNA helicase n=1 Tax=Skeletonema marinoi TaxID=267... [more]
K0R7X0_THAOC1.180e-15465.07DNA helicase (Fragment) n=1 Tax=Thalassiosira ocea... [more]
UPI001E1D53468.210e-15168.27LOW QUALITY PROTEIN: DNA replication licensing fac... [more]
R7Q8Z2_CHOCR3.060e-14968.64DNA replication licensing factor MCM6 n=1 Tax=Chon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13296contigM-pyrifera_M_contig13296:1018..8609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score664.5
Seed ortholog evalue2.8e-188
Seed eggNOG ortholog2880.D7FT80
Preferred nameMCM6
KEGG koko:K02542
KEGG Pathwayko03030,ko04110,ko04111,ko04113,map03030,map04110,map04111,map04113
KEGG ModuleM00285
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000347,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006271,GO:0006275,GO:0006277,GO:0006279,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009987,GO:0010556,GO:0010927,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022616,GO:0030154,GO:0030174,GO:0030554,GO:0030703,GO:0030707,GO:0030855,GO:0031261,GO:0031298,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0042555,GO:0042623,GO:0042802,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:0097373,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902299,GO:1902315,GO:1902969,GO:1902975,GO:1903046,GO:1903047,GO:1990837,GO:2000112
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0480@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Exons8
Model size1062
Cds size1062
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13296.5906.1prot_M-pyrifera_M_contig13296.5906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13296 1018..8609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.0832589-CDS-M-pyrifera_M_contig13296:1017..11071622815813.0832589-CDS-M-pyrifera_M_contig13296:1017..1107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 1018..1107 +
1692277583.1018882-CDS-M-pyrifera_M_contig13296:1017..11071692277583.1018882-CDS-M-pyrifera_M_contig13296:1017..1107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 1018..1107 +
1622815813.0954149-CDS-M-pyrifera_M_contig13296:1572..17071622815813.0954149-CDS-M-pyrifera_M_contig13296:1572..1707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 1573..1707 +
1692277583.1153224-CDS-M-pyrifera_M_contig13296:1572..17071692277583.1153224-CDS-M-pyrifera_M_contig13296:1572..1707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 1573..1707 +
1622815813.1088104-CDS-M-pyrifera_M_contig13296:2798..29751622815813.1088104-CDS-M-pyrifera_M_contig13296:2798..2975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 2799..2975 +
1692277583.126638-CDS-M-pyrifera_M_contig13296:2798..29751692277583.126638-CDS-M-pyrifera_M_contig13296:2798..2975Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 2799..2975 +
1622815813.1213667-CDS-M-pyrifera_M_contig13296:4707..48511622815813.1213667-CDS-M-pyrifera_M_contig13296:4707..4851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 4708..4851 +
1692277583.1350443-CDS-M-pyrifera_M_contig13296:4707..48511692277583.1350443-CDS-M-pyrifera_M_contig13296:4707..4851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 4708..4851 +
1622815813.1336482-CDS-M-pyrifera_M_contig13296:5101..52541622815813.1336482-CDS-M-pyrifera_M_contig13296:5101..5254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 5102..5254 +
1692277583.1428418-CDS-M-pyrifera_M_contig13296:5101..52541692277583.1428418-CDS-M-pyrifera_M_contig13296:5101..5254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 5102..5254 +
1622815813.1433735-CDS-M-pyrifera_M_contig13296:5936..60591622815813.1433735-CDS-M-pyrifera_M_contig13296:5936..6059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 5937..6059 +
1692277583.1510525-CDS-M-pyrifera_M_contig13296:5936..60591692277583.1510525-CDS-M-pyrifera_M_contig13296:5936..6059Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 5937..6059 +
1622815813.1535692-CDS-M-pyrifera_M_contig13296:7876..80261622815813.1535692-CDS-M-pyrifera_M_contig13296:7876..8026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 7877..8026 +
1692277583.1594152-CDS-M-pyrifera_M_contig13296:7876..80261692277583.1594152-CDS-M-pyrifera_M_contig13296:7876..8026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 7877..8026 +
1622815813.16578-CDS-M-pyrifera_M_contig13296:8519..86091622815813.16578-CDS-M-pyrifera_M_contig13296:8519..8609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 8520..8609 +
1692277583.1720045-CDS-M-pyrifera_M_contig13296:8519..86091692277583.1720045-CDS-M-pyrifera_M_contig13296:8519..8609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13296 8520..8609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13296.5906.1

>prot_M-pyrifera_M_contig13296.5906.1 ID=prot_M-pyrifera_M_contig13296.5906.1|Name=mRNA_M-pyrifera_M_contig13296.5906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=354bp
LCHRTAFLASSVLPAEQVSGGYNIRDETDEAGGGADGAEELTEEEGREIL
EMKNSSNIYTDMVNSIAPTVFGHSEVKRGVLLMLLGGVHKQTAEGIKLRG
DINVCIVGDPSTAKSQFLKYVHGFLPRAIFTSGKASSAAGLTASVMKDHE
TGEFCIEAGALMLADNGICCIDEFDKMDIGDQVAIHEAMEQQTISITKAG
IQATLNARTSILAAANPLYGRYDRSKTLKANVQQISAPIMSRFDLFFVVL
DECDETADFNIAQHIIRVHQNKAEALDPPFTAMQMQRYIRFARRLNPTIT
REGRQTMVECYRALRQNDCVGRNKTAYRITVRQLESMIRLSEALARLHLD
DQVR
back to top

mRNA from alignment at M-pyrifera_M_contig13296:1018..8609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13296.5906.1 ID=mRNA_M-pyrifera_M_contig13296.5906.1|Name=mRNA_M-pyrifera_M_contig13296.5906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7592bp|location=Sequence derived from alignment at M-pyrifera_M_contig13296:1018..8609+ (Macrocystis pyrifera P11B4 male)
TTGTGTCATAGGACCGCGTTTCTTGCGAGCTCGGTCCTGCCGGCGGAGCA
AGTGTCGGGGGGCTACAACATCCGCGATGAAACCGACGAGGTATTTTTCT
TACACTTTGCTAACAGCTAACAGCGCCCACTATTACGGGGGACCATAGTA
AACAGGACCAAATATTGTTTGTAAAAATGGGTAAATATATAGGTTTTTAT
GTATACCATAGGTCCTATTAACTATGGACCCCCGTAGTAATTTATTTTGT
CGCACAATTGGCGCGTGGTTTTTGTCCTGCGACGAATGAGGAAGTTGTTG
TTGTCACTTTAACTCATCGCAAAAATTTAGAGAGTGACGTGCGGTAGCGG
CTTTTTTCTCGTCTTTCTTCTCCCGAGTCACGTTTTCATGTGTCCTACGA
TTGGTCACGGACGAGTGATCGATGCTCACTGCCGAAACGTACGAGCACCA
ACCGTCGACACGAACCCACACCCTGTAGGGCCAGGACAGGCTGATTTTCA
TCCGGTATATATCTGAAGGTTTTCGATGGCGGCCGTGGCGGTGTTTTTTT
TTCAGGCCGGGGGAGGGGCTGACGGCGCAGAGGAGCTGACGGAGGAGGAA
GGTCGGGAGATCCTCGAGATGAAGAACAGCAGCAACATCTACACTGACAT
GGTCAACAGCATCGCGCCCACCGTTTTCGGCCACTCCGAGGTACCGTCAC
GCAACGGCTATACACTCGTTCACTTGGCTCACTCGCTGATTGGTCGACTT
TGACACGTTACTCCCCGAATATATACCCCCACCTACAACATACCACCGAA
AAGCGTCACCGTTTTACAGCCCGAGTACCTACTCCGCTAAAACAAGCCAC
CGAAATAAGTCGCCATTTTACAGCCCGAACACCTCGCTAAAACACACCAG
GTACCTGGTGGCACCAGGTACGCCACCGAAACATGTCACCGCTGATTCTT
TTCGCCCCGAGCATCCCACTAAAGCGTGCCACCGAATCATTCCTCCATTT
TTTTTCTCACAGCCCGAAAAACCCGCTCAAACAAGCCACTCGAACGTGAA
TATGTTACCCTTTTTACATCCCAAATACGTACCCCGCCGTGGCATGCCAA
CAAGATAAGCCACCAACGCCCCCCCAGGTTCCTGCGGCCCAGTAATGGCC
GCTTGAAACGGCCGCACTACTAATAGTAATAGTGCCAGTAACTTTGACGT
TCAGTATTCACCTCGACGGTTCGCCCACCCTGCCTTACCGGCCGGCACGC
CTCCGTGCCTCTGGGAAAACCACTGCCCAGAGGGCGGCTGCACAAGACGA
TCGACGTTTGTATTGTAAAATTAGAGCCCCTCTTTAGGGGGGCTGTTACT
TCATACCGCGATCGACCCTTATGACGCCTCAACGTTTCCGTCGACCCGCC
AAGCTCAGCCTGAACCAACGCAACCTACTTACCCTTCCCGCTGACTGTCG
AATCGCTAAACTACCGTACTGAACCGCCGAACCGCTAAAACGACCAAACC
GCCGAACCAACCGAACCGCAGAACCGTCAAACCAAAACCGCGGGACGGAC
CTAAGGGACAAAATAAACCGGGCCACCGAATCGACCGAGCCGCCGAGCCG
AACCGCTAAATATCGCTGAGGCTGAACTGCCGAACCGACCGAACAGCCCA
ACCGCTGAAACCGAAACCGCCGAACTGACCGAAGTACCGAACCTGAATCG
CCCGAATCGACCGAATCTGAATCGACCGAGCCAACCGATTCCCGCCGCGA
ATATGGGTGACCTGCTGTGCGGTTCCGCCAGGTGAAGCGCGGCGTGCTCC
TGATGCTCCTGGGCGGCGTGCACAAGCAGACGGCGGAGGGCATCAAGCTC
CGCGGTGACATCAACGTGTGCATCGTCGGAGACCCCTCGACAGCGAAGAG
CCAGTTCCTGAAGTACGTGCACGGTTTTCTTCCCCGGGCCATCTTCACCT
CCGGAAAGGTGAGGAACGTTCGTTGTTATTTATATAGCTCCTTGGGAACG
TTCCTGGTCGCTCGGAACGTTCCGGAACGTTCGGAAATTTCCTAGAATTT
TCCTGCAACGGGCCTCATCCTCCTTTCAAAACCTTTTGTTCTTTAAGTTC
GCGAATTTTTGCGGCAGTAGCTACACGAAGTAAACGTATTCTCTTTTTTC
TGTCGCGTTTCCGTTTGTGTGTTTTTCTTGATTTATATTTCTGGTGTTGA
GACGGATCTGCTAGACGCATCGCGCCGTTTCACCGGCCGGCAGCGACCAC
GTCTGCCGCCACCGAGCAATCTCGTATTGTCAAGGCTTGTCTGCTCCGCC
TCCTCCGCTTTTGTTTTCTCTGGTGCGGGAGAATGATCCCCCCGCCCCCC
CCCAGAACCCAAACCAATGTAAGAATGTCCGCTTCACAAGCGGTTCTTAG
TAGAATGCAGCTCACCTCGAACGCGACTCGCCCAGCACCTGACGGTGTTT
CGCGCTTCGTGCAAGCTATGTCGGCCTGGTAGGTGAAAATCCGATGTGCT
CCGTCCCGGCATTGTAGGGATGCGAGGGTTCATGGTCATACGACTTCGCC
CATGCATGACATGAGACATGAGTGCACCCCCCTCCCCCAAATCCTCCTGT
TCGTGTTTACTTTGTGCTCTCTGCGTTCCGTCGTGTTGATTACGGTCCCT
TTTATCCTTGCTGGCGTGAATGCCTTTCGCGCGACGGAGTCACACAACAG
TAAGAGAGCCTAGGAGACGTGCACTCAACGTCGTACAGTGTGGGGTCGGC
TTGCAGATATTAATATTGGCATCCCTTTACTCGGCCTGACCCTTCCTTTC
TCTCTGCCCATCTCCCCCTTTTACGCCTTCACTAGAAAAACGAGCAAACA
ATCAATAAATGAATCAAGCCCTGAACCAACCGATGAATCAATTTATCATT
CAATCAATTCAACCAATCTAACAACTAATCAAGTCGATCAATCAATCAAT
CAATCTCATAAGCAAACAAACCAACGAACGAACAAGCAAACAGACCAACA
AAGCAAGCAAGCAACCAGTGACCAGTCGATCAAGCAACCAAACCGAACTT
GTCAACCTTCTAATGCCCCAAACAACCGAACCAACCAACCAACCCAGCAA
CCAATCAACCGAAGTAAACAGTCAACCAACCCGTTCAACCAACTAGCGAA
CCAACCAGGGGTACACGGAAGCAAAAGAAAAGGGAGCCACACTCGCGACC
ATGTCGGAATTGAAAACAAACTAGCGAGTTGGGATTTTTGCCAGGAATGA
AATAAGACATGTTCTTTCTTTTCAGTTTTGTTTTAATCGATTTCAGTAGT
TGTCTGGGCCTAAAAAAAAAGAAGTGGGGTGTCATTTTGTTTTTTTTTTC
GTGTGCACCAACCAACAATCAAACCAATCCACCAACTAATCTCCAAGAAT
CGCCCAACCAACGGTTTATATAAGAACTAAAAAGTAAACCATTCAACCAA
ACAATCAACCGAAACCCAGCCAACCGTTCAACCCGTTCAACCAACCATCT
TAACAGCCAACCGATCAACCCGTTCAACCAACCATCTCAATAGCCAACCG
AAACCCAGCCAATCGATCAACCCGTTCAACCAACCATCTTAACAGCCAAC
CGAAACCCAGCCAACCGATCAACCCGTTCAACCAACCATCTTAACATCCA
ACCAACCAACCAACCATCACGTCAACCAATCGAAATGTAGGCGTCGAGCG
CGGCGGGTCTTACGGCGTCAGTGATGAAGGACCACGAGACTGGCGAGTTC
TGCATCGAGGCAGGGGCGCTGATGCTGGCGGATAACGGCATCTGCTGCAT
CGACGAGTTCGACAAGATGGACATCGGAGACCAGGTGATTTTGCTAGCTC
CGGCCGTTGTTCTGTCGCGCTAGAAGTGTAAATTTTATTGGTATTTGGTA
CTGTTTTTTTCGCAGTATTTTCAATTTCGATTTTGGTGTGATTTTTTTTG
TGCTGCGTTCGTTTGCTGCTATCACTTGTTGCCGTTCCTGTTCTATTTCG
TGCTATTTGTCGTACCTACATGACGCGTGTCTCTCTGTGTGTAGCCATCC
CGCCCCCTCCCCTCGCCGGTACCGCCTCCTTCAGGTGGCAATCCACGAGG
CCATGGAGCAACAGACAATCTCCATCACCAAAGCCGGCATCCAGGCGACA
CTGAACGCTCGGACCTCTATCCTCGCCGCGGCGAACCCGCTCTATGGCCG
CTACGACCGATCCAAGACTCTCAAGGCCAACGTGCAGGTACGGTAGGGCA
CAGCAGTAGAGTGGCAGTAGGGTGTCGTGGAGTGTCTTGGAGTGCAGCAG
TAGAGTGCAGCAGAGTGTGTCGATGTACAGTATAATGCAAGGTTTGCAGT
AGTAGAGTGCTGCAGCGTGCAATAGAATACTGCTTCACAGTTTTCGGTGC
AGTACAGGGCAGTAGCGCAATAGACGAACGGCGAGAAGACGGGGGAGGGG
ACGTGTAGGGTTCCTCGCCGGGGATGCAAGGCTCACACATGCCAGCGCAC
CAACACCGCGGGTTCGCTCAATCCGTCCCTCCCCCCTCTCTCTGCCATCC
CCTCCCTCTCCTTGTTCCCCTCCCCCTCCGTCCCCCCCCGCTCCCCAACC
CTCCCCCGCCCTTGCCTTTGCCCCACCCCCCCTCACCCCCTTTCTTGGTG
CAAGCAATGTCTGCCTGGTCGGTGAAAACCCGGCGTGCTCCGTCCCGGCA
TTGTAGGGACGGGAGGGTCTATGGTCATATGACTACGGCCATGCATGAAA
ACGAGTACACCCCCCCCCTCATCCCCCTTCCTCCCCCCTCGCCCTCCCCT
CCCTCCCTTCTACCCCTCACCCTCCCCTCCCTCCTCTCCCATCCTCCACC
CCTTCCCCTTTTTCCTCCCCTTGCCCCCCGCTCCCCCTCCCGCCGGCGCC
TCCATAAATTGTGGTGGAGCAGATCAGCGCGCCGATCATGAGCCGCTTCG
ACCTGTTCTTCGTGGTGCTGGACGAGTGCGATGAGACGGCCGACTTCAAC
ATCGCGCAGCACATCATCCGAGTTCACCAGAACAAGGCGGAGGTGGGCGA
GCGTGCCCGCCGGGGTTTCGATTTTTGGGCCATGCATGTTACGTGAGGGG
GCGTGGGTTTTGGACCTGTATTTTTCTGGCTGGCGGAGGGGGGGACTGCT
TCCTCATATGAGGGACTATATGCCCAACAATTACGGGGGACCATACAGTA
GTAAATAGGACCAAATATTGTTAGTAAAAATAGGTAAATATATAAGTTTT
TATGTATAACATAGGTCCTATTAACTATGGTCCCCCGTAAAAGTAGGGGT
GGGCACTGGCTGACTCAGTCAGTAGCGATTGCACTGTCGTCAAAAACAAT
CAGTATATTGGATTGAAGCAGTATACTGCTGTCTCTCCTCGCTACCATCT
CCTCTTGGAACGTATTATCGCGTGTTTCTTGGGCGTACGTGACATAAAAT
ATACTGGAGACTATACTGGTCACGTCAATCAGTAGACTACTGCCAGTACA
CGCGTACCAGTACCCAGCCCTACCAACTAACTTTATTTGCATCCCCTTAT
ATATGTACCGCTCTGACCGAAAATATAACCCCCATTTGGAATCTGGGATC
AATATAAAAACGGTGACTATATTTACGGTCATAGTGGTTCGTTTTGGTAA
GTCTGTTCGATTGTTTGTTTTGCAGGGGTGCGCGATTAATCAATCGTTTC
ACAAGAGACCTTTCAGTCGGTCTCGGGGGCGAGGTTTCGAACTCCTCGTC
CTAGTGGGTACCTGACGATTTTTTGGTACACCCCCCCCGACCCACCGTAC
GTGGCTTGATCCTTGGCTGTAGGGCGGCTAGTGCGGCCGCCCCCCTGCTG
TCGGGGTGGAGTGTGAAAGGGGAGGGGGTTGTAGAGGGAGGGAGGGAGGG
AGGGTAGGGGGGGGGGGTGCATTCATTATCGTGCATTGCCGTAGTCATAT
GACCATATACCAGAGGGAAGGGGGGGGGGGTGGAGGAGAGTAGGAGTCAG
GGGAGGGGAGAGCGAGGAAGAGGTGGAGGGAGGGAGGGAAGGAGGGAGAA
GGGGGAAAATGGAGTGAAAGTTGCCACGCCGGGAACAAAAAACAGTGCAT
TCGACGCTGTCGTCCGTATTCAAGAAAGTTCGCCTCGCGAGTGGGTCTTG
GTAGGATGCAGCCCACCCTTCATGCGACTCGCCCAACACCTCTGCAAGCA
ATGTCACACAATGTCTGCCTGGTCGGCGAAAACCCGACGTGCTCCATCCC
GGCATTGCAGGGATGCGAGGGTCATTGGTCATATGACTACGGCCGTGCAT
GAACATACGTACCCCCCCCCCCCCTACATATTGTATAGGTTAGGTTGACG
TCGGTTTGCAATGACACTGTAAAACACGCCGCTCACTACATGAGCTAGAC
AACCAGGGTACCGTTTTTGTTTTATTTTTGGCGGTCGGTCAAAGTTGGCG
ATCGAGTTAGATCGTTTGTGTGGGGTGGAGAACCTTTGCTCCGCACGAGG
GGAATGATCGCATCACGTAGCGTTTATCGTAAAGCACCCACGAGGCAGTT
TTCACAGCACCCCTATTGCTGTCTCTGGAGCAACGGAGAATAAATTAAAA
ACTCATTGAAGCCGTCATCCATATGCAAGAAAGTCCGCCTCTAAAGCGTC
TCTTGGTAGGATGCAGCCCACCCTCCATGCGACTCGCCCAACACCTCACG
ACGCTTCGTCCTTGGTGCAAGCAATATCCACCTGGTCGTTGACAACCCGA
CGTGCTCCGTGCCGGCGTCGTAGGGATGCGAGGGTCTATGGTCATACGAC
TACCGCCATGCAGGATAATGAGTACACCCCCCTCCTCCCCCCCCAACCCC
GCCTGGTAGGCTTTGGACCCCCCTTTCACGGCAATGCAGATGCAGCGCTA
CATTCGCTTCGCGCGGAGGCTGAACCCCACTATCACCCGGGAAGGAAGGC
AGACCATGGTTGAGTGCTACCGCGCCCTCCGCCAGAACGATTGCGTCGGC
CGCAACAAGGTGGGTGCTGGGTGCTGGGTTGGTGTGTGTGTTTGTGTGTG
TGTGTTTTTTTTGTCTTGTTATATGGTCAAGTCGTGGTTTTTGTGTTTTG
TGTTTGGTTTTGTTTTGTTTTGCTGTGTTGTTGGTGTTGTTGGTGTTGGA
AGTGGTGATATTAATAGTGGTAGTGTTGGTTTTGGTGTTAGTGTTGGGTG
GTGTTGGTGTTGGGTGTGGAGCTGCTGTTGTTGTCGTTGCTCTTGTTGTC
AGCGTTGGCGATGTTTGTTATCTGTTTTTTTGCTCTGCCCCACGACAGGC
AGATTGTAGGGATGCGAGGGTCTGTATGGTCATACGATTACGGCCGTGCA
TGATATCGAGTACACCCCCCCCCCCCTCCCCTCCTCGCCATCGCTATCTT
CAACAATGTACCTGGTATGAGATATACTGTACTGCACGCGCAACATGTGT
TTAATGTGTCCCCGCCGGCGATGCCCTTGTTTTGGAACTCCTCGGTTGAC
AGACTGCCTACCGTATAACGGTGAGGCAGCTAGAATCTATGATTCGTCTT
AGCGAGGCGCTGGCACGACTTCACCTTGACGACCAGGTACGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13296:1018..8609+

>mRNA_M-pyrifera_M_contig13296.5906.1 ID=mRNA_M-pyrifera_M_contig13296.5906.1|Name=mRNA_M-pyrifera_M_contig13296.5906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2124bp|location=Sequence derived from alignment at M-pyrifera_M_contig13296:1018..8609+ (Macrocystis pyrifera P11B4 male)
TTGTGTCATAGGACCGCGTTTCTTGCGAGCTCGGTCCTGCCGGCGGAGCA
AGTGTCGGGGGGCTACAACATCCGCGATGAAACCGACGAGTTGTGTCATA
GGACCGCGTTTCTTGCGAGCTCGGTCCTGCCGGCGGAGCAAGTGTCGGGG
GGCTACAACATCCGCGATGAAACCGACGAGGCCGGGGGAGGGGCTGACGG
CGCAGAGGAGCTGACGGAGGAGGAAGGTCGGGAGATCCTCGAGATGAAGA
ACAGCAGCAACATCTACACTGACATGGTCAACAGCATCGCGCCCACCGTT
TTCGGCCACTCCGAGGCCGGGGGAGGGGCTGACGGCGCAGAGGAGCTGAC
GGAGGAGGAAGGTCGGGAGATCCTCGAGATGAAGAACAGCAGCAACATCT
ACACTGACATGGTCAACAGCATCGCGCCCACCGTTTTCGGCCACTCCGAG
GTGAAGCGCGGCGTGCTCCTGATGCTCCTGGGCGGCGTGCACAAGCAGAC
GGCGGAGGGCATCAAGCTCCGCGGTGACATCAACGTGTGCATCGTCGGAG
ACCCCTCGACAGCGAAGAGCCAGTTCCTGAAGTACGTGCACGGTTTTCTT
CCCCGGGCCATCTTCACCTCCGGAAAGGTGAAGCGCGGCGTGCTCCTGAT
GCTCCTGGGCGGCGTGCACAAGCAGACGGCGGAGGGCATCAAGCTCCGCG
GTGACATCAACGTGTGCATCGTCGGAGACCCCTCGACAGCGAAGAGCCAG
TTCCTGAAGTACGTGCACGGTTTTCTTCCCCGGGCCATCTTCACCTCCGG
AAAGGCGTCGAGCGCGGCGGGTCTTACGGCGTCAGTGATGAAGGACCACG
AGACTGGCGAGTTCTGCATCGAGGCAGGGGCGCTGATGCTGGCGGATAAC
GGCATCTGCTGCATCGACGAGTTCGACAAGATGGACATCGGAGACCAGGC
GTCGAGCGCGGCGGGTCTTACGGCGTCAGTGATGAAGGACCACGAGACTG
GCGAGTTCTGCATCGAGGCAGGGGCGCTGATGCTGGCGGATAACGGCATC
TGCTGCATCGACGAGTTCGACAAGATGGACATCGGAGACCAGGTGGCAAT
CCACGAGGCCATGGAGCAACAGACAATCTCCATCACCAAAGCCGGCATCC
AGGCGACACTGAACGCTCGGACCTCTATCCTCGCCGCGGCGAACCCGCTC
TATGGCCGCTACGACCGATCCAAGACTCTCAAGGCCAACGTGCAGGTGGC
AATCCACGAGGCCATGGAGCAACAGACAATCTCCATCACCAAAGCCGGCA
TCCAGGCGACACTGAACGCTCGGACCTCTATCCTCGCCGCGGCGAACCCG
CTCTATGGCCGCTACGACCGATCCAAGACTCTCAAGGCCAACGTGCAGCA
GATCAGCGCGCCGATCATGAGCCGCTTCGACCTGTTCTTCGTGGTGCTGG
ACGAGTGCGATGAGACGGCCGACTTCAACATCGCGCAGCACATCATCCGA
GTTCACCAGAACAAGGCGGAGCAGATCAGCGCGCCGATCATGAGCCGCTT
CGACCTGTTCTTCGTGGTGCTGGACGAGTGCGATGAGACGGCCGACTTCA
ACATCGCGCAGCACATCATCCGAGTTCACCAGAACAAGGCGGAGGCTTTG
GACCCCCCTTTCACGGCAATGCAGATGCAGCGCTACATTCGCTTCGCGCG
GAGGCTGAACCCCACTATCACCCGGGAAGGAAGGCAGACCATGGTTGAGT
GCTACCGCGCCCTCCGCCAGAACGATTGCGTCGGCCGCAACAAGGCTTTG
GACCCCCCTTTCACGGCAATGCAGATGCAGCGCTACATTCGCTTCGCGCG
GAGGCTGAACCCCACTATCACCCGGGAAGGAAGGCAGACCATGGTTGAGT
GCTACCGCGCCCTCCGCCAGAACGATTGCGTCGGCCGCAACAAGACTGCC
TACCGTATAACGGTGAGGCAGCTAGAATCTATGATTCGTCTTAGCGAGGC
GCTGGCACGACTTCACCTTGACGACCAGGTACGAACTGCCTACCGTATAA
CGGTGAGGCAGCTAGAATCTATGATTCGTCTTAGCGAGGCGCTGGCACGA
CTTCACCTTGACGACCAGGTACGA
back to top