mRNA_M-pyrifera_M_contig13278.5900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13278.5900.1
Unique NamemRNA_M-pyrifera_M_contig13278.5900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: D7FIM2_ECTSI (Chitobiosyldiphosphodolichol beta-mannosyltransferase, family GT33 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM2_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 4.290e-157
Identity = 284/453 (62.69%), Postives = 315/453 (69.54%), Query Frame = 1 
Query:    1 IMQNFGIREAYIVYDQPPEFFRAPTLSERHELFKKLAETSTDFADAVRAHKAAAXXXXXXXXXXXXXXXXXXXXXXXAFDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGPYPKKTHSGARHSRGGDGVEGETQGEGGGERTPFTTRSVDGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVTRWRENWDEFAWPLFSKLGRLP--PANKSAEGGEWSRXXXXXXXXXXXVWEAGWSTAAMVEAVVVPAMALVILLVVVPSLPSRLEDWAVGAVANVADRWR 1353
            I +NFG+ E Y+VYDQPPEFFRAPT+ ERHELF +L  T+ DFADA+RA   A+           XXXXXXXXXXXX      XXX          XXXXXXXXXXX                        E  P P      A         EG+  G+   ERT FTTRS DG  ELRRDRPALLVSSTSWTPDEDFSVLLEALRRFD+RTASGASP+LPLVMVVVTGKGP+KA YV RM+AARMSRVA+CTAWLEP+DYP+LLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHF+CL+ELV+ GYNGCVF+DST+LALQLEALLDGFPRGG EL+GYR+NVKEV RWRENWDE+AWP+FSK+GRL   P N    G   S                GWST  + E+VVVPA  L++LLV VP L   LE WA    A  ADRWR
Sbjct:  234 IKENFGVPEGYVVYDQPPEFFRAPTVPERHELFTRLTRTNPDFADAIRALTLASLRGELSAIGGGXXXXXXXXXXXXXXXXXXXXXRPHPKKARGHXXXXXXXXXXXSDSGGNREVT--------------EVTPPPIARTPPAEWE------EGDPAGQ---ERTLFTTRSADGVYELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDLRTASGASPTLPLVMVVVTGKGPDKAKYVARMRAARMSRVAVCTAWLEPEDYPLLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFECLKELVQHGYNGCVFRDSTELALQLEALLDGFPRGGSELDGYRSNVKEVQRWRENWDEYAWPIFSKIGRLRAGPTNTRGTGARGSPRGGFFSNARG----GGWSTGGLAESVVVPATMLLVLLVSVPWLSHSLESWAADGAA-AADRWR 658
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: A0A3Q3DUX2_HIPCM (ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3DUX2_HIPCM)

HSP 1 Score: 239 bits (611), Expect = 1.760e-71
Identity = 114/208 (54.81%), Postives = 154/208 (74.04%), Query Frame = 1 
Query:  490 ERTPFTTRSVD-GALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVK--EVTRWRENWDEFAWPLF 1104
            E+T F+ R ++   + LR DRP LL+SSTSWT DEDFS+LL+AL+ ++   ++G +  LP ++ V+TGKGP+K  Y++ + + R+  V ICT WLEP+DYPVLLG ADLG+CLH S+SG+DLPMKVVDMFGC +PVCAVHF CL+ELV+ G+NG +F DSTQLA QL++LL  FP    +L  +R N++     RW +NWD+   PLF
Sbjct:  163 EKTVFSVRDLNKDTVTLRPDRPTLLISSTSWTEDEDFSILLQALQEYEKFISAGET--LPPLICVITGKGPQKERYMKMIDSLRLEHVKICTPWLEPEDYPVLLGCADLGVCLHKSSSGLDLPMKVVDMFGCCLPVCAVHFLCLEELVKHGHNGLIFSDSTQLAQQLKSLLSDFPSSDGKLGAFRRNLRANREQRWDDNWDQHVLPLF 368
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: UPI00094E93A2 (chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 n=2 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E93A2)

HSP 1 Score: 239 bits (609), Expect = 7.760e-70
Identity = 114/209 (54.55%), Postives = 154/209 (73.68%), Query Frame = 1 
Query:  490 ERTPFTTRSVD-GALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVK--EVTRWRENWDEFAWPLFS 1107
            E+T F+ R ++   + LR DRP LL+SSTSWT DEDFS+LL+AL+ ++   ++G +  LP ++ V+TGKGP+K  Y++ + + R+  V ICT WLEP+DYPVLLG ADLG+CLH S+SG+DLPMKVVDMFGC +PVCAVHF CL+ELV+ G+NG +F DSTQLA QL++LL  FP    +L  +R N++     RW +NWD+   PL S
Sbjct:  279 EKTVFSVRDLNKDTVTLRPDRPTLLISSTSWTEDEDFSILLQALQEYEKFISAGET--LPPLICVITGKGPQKERYMKMIDSLRLEHVKICTPWLEPEDYPVLLGCADLGVCLHKSSSGLDLPMKVVDMFGCCLPVCAVHFLCLEELVKHGHNGLIFSDSTQLAQQLKSLLSDFPSSDGKLGAFRRNLRANREQRWDDNWDQHVLPLLS 485
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: A0A5D6XQY7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQY7_9STRA)

HSP 1 Score: 236 bits (603), Expect = 2.660e-69
Identity = 113/202 (55.94%), Postives = 139/202 (68.81%), Query Frame = 1 
Query:  520 DGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVTRWRENWDEFAWPLFSKLGRLP 1125
            D  +  R +RPA+L+SSTSWT DEDF +LL AL   D RTA   +   P ++VVVTGKGP+K MY+ER++     R+ I T WL+  DYP++LGSADLG+CLHTS+SG+DLPMKV+DMFGCGVPVCAV F CL ELV+   NG +F    QLA QL  LL G+P G  +L   R  ++ V  W ENW   A PLF KL RLP
Sbjct:  263 DDVVVRRENRPAVLISSTSWTADEDFGILLRALAHVDERTAQLPASEFPDLLVVVTGKGPQKQMYLERIRQLAFKRIRIATMWLDASDYPLVLGSADLGVCLHTSSSGLDLPMKVLDMFGCGVPVCAVGFKCLDELVKHDKNGLIFDSPEQLAAQLIELLGGYPTGAAKLNRLRAALRTVEHWPENWKRNAAPLFKKLIRLP 464
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: A0A484E7Z0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7Z0_BRELC)

HSP 1 Score: 236 bits (601), Expect = 6.770e-69
Identity = 111/213 (52.11%), Postives = 149/213 (69.95%), Query Frame = 1 
Query:  502 FTTRSVDGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVTRWRENWDEFAWPLFSKLGRLPPANKS 1140
            FT  +    ++ R +RPA+++SSTSWT DEDF +LL AL   + RT+S      P ++VVVTGKGP+KAMY+E+++     R+ I T WLE  DYP+LLG+AD+G+CLHTS+SG+DLPMKV+DMFGC +PVCA+ F+CL ELV+ G NG VF  S QL+ QL  LL G+P+   +L+  RT++K V RW ENW   A P+F K  RL  +  S
Sbjct:  260 FTGLNGKDVVQSRDNRPAMVISSTSWTADEDFGILLSALEHLNARTSSLDVTEFPNLLVVVTGKGPQKAMYLEKIQTLAFQRIRIATMWLEASDYPLLLGTADVGVCLHTSSSGLDLPMKVLDMFGCELPVCAIGFNCLDELVQHGINGLVFNSSEQLSAQLFDLLQGYPKNTRQLDHLRTSLKTVKRWPENWKRVAAPIFKKHLRLRSSRTS 472
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: A0A2I4D7U8_9TELE (chitobiosyldiphosphodolichol beta-mannosyltransferase n=2 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4D7U8_9TELE)

HSP 1 Score: 235 bits (599), Expect = 2.200e-68
Identity = 117/208 (56.25%), Postives = 148/208 (71.15%), Query Frame = 1 
Query:  490 ERTPFTTRS-VDGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVTR--WRENWDEFAWPLF 1104
            E+T FT ++  DG + LR  RPALLVSSTSWT DEDFS+LL AL+ ++     GAS  LP V+ V+TGKGP+KA Y   M+A  +  V ICT WL+ +DYP+LLGSADLG+CLH S+SG+DLPMKVVDMFGC +PVCAV F CL ELV+DG NG +F+DST+LA QL++LL  FP     L  +R N++      W ENW++   PL 
Sbjct:  282 EKTLFTIQNRSDGVVSLRSGRPALLVSSTSWTEDEDFSILLRALQEYEGFIRGGAS--LPSVLCVITGKGPQKAHYQRTMEALHLDHVKICTPWLQAEDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCCLPVCAVSFQCLPELVKDGENGLIFRDSTELAAQLQSLLSDFPSPEGRLGSFRRNLRSSRGQCWEENWEQKVLPLL 487
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: UPI001458E49D (chitobiosyldiphosphodolichol beta-mannosyltransferase-like isoform X1 n=3 Tax=Pectinidae TaxID=6566 RepID=UPI001458E49D)

HSP 1 Score: 235 bits (599), Expect = 8.430e-68
Identity = 105/207 (50.72%), Postives = 145/207 (70.05%), Query Frame = 1 
Query:  496 TPFTTRSVDGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVK--EVTRWRENWDEFAWPLFSK 1110
            T FT RS  G ++ R DRPALLVSSTSWT DEDF +LL++L++++V  +      +P ++ V+TGKGP+K  Y + +++     +  C  WLE +DYPVLLGSADLG+CLH S+SG+DLPMKVVDMFGCG+PVCAVH+ CL ELV+ G++G +FK+S +L +QL+ LL+ FP     L+  R N+K  +  RW +NW     PL  +
Sbjct:  252 TAFTYRSASGKIQYRNDRPALLVSSTSWTEDEDFGILLKSLQKYEVAASKDLQKGIPDILCVITGKGPQKEFYSQEIESIEWKHIHFCLPWLEAEDYPVLLGSADLGVCLHKSSSGLDLPMKVVDMFGCGLPVCAVHYPCLSELVKHGHSGLIFKNSQELCIQLQELLESFPDDLKTLKKMRCNLKSFQAIRWHDNWKRTVLPLLKQ 458
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: M4AFB2_XIPMA (Glycos_transf_1 domain-containing protein n=8 Tax=Poeciliinae TaxID=586240 RepID=M4AFB2_XIPMA)

HSP 1 Score: 233 bits (593), Expect = 1.600e-67
Identity = 115/209 (55.02%), Postives = 151/209 (72.25%), Query Frame = 1 
Query:  490 ERTPFTTRSV-DGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVT--RWRENWDEFAWPLFS 1107
            E T FT R++ DG + LR DRPALL+SSTSWT DEDFS+LL++L+ ++   A GA   LP ++ V+TGKGP+K  Y + + + R+ RV ICT WLE +DYP+LLGSADLG+CLH S+SG+DLPMKVVDMFGC +PVCAVHF CLQELV    NG +F++S +LA QL++LL  FP     L  +R N++     RW +NWD+   PL +
Sbjct:  283 EATVFTFRNLGDGGVTLRSDRPALLISSTSWTEDEDFSILLDSLQEYEGFIAGGAP--LPSLVCVITGKGPQKEHYRKLISSLRLERVKICTPWLEAEDYPLLLGSADLGVCLHKSSSGLDLPMKVVDMFGCCLPVCAVHFHCLQELVEHEVNGLIFRNSAELAQQLKSLLSEFPSSDGRLGVFRRNLRASRGQRWDDNWDQNVLPLLA 489
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: UPI001B3AC45F (chitobiosyldiphosphodolichol beta-mannosyltransferase n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AC45F)

HSP 1 Score: 232 bits (592), Expect = 2.300e-67
Identity = 122/240 (50.83%), Postives = 161/240 (67.08%), Query Frame = 1 
Query:  397 AGPYPKKTHSGARHSRGGDGVEGETQGEGGGERTPFTTRSV-DGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVKEVT--RWRENWDEFAWPLFS 1107
            A  YP+  H G+         EGE + E    RT F+ R + D ++ LR +RPALL+SSTSWT DEDFS+LL+AL  ++     GAS  LP ++ V+TGKGP+K  Y + + +  +  V ICT WLE +DYPVLLGSADLG+CLH S+SG+DLPMKVVDMFGC +PVCA+HFDCL ELV+ G NG +F+DS +LA QL++LL  FP     L  +R N++     RW +NWD+   PL +
Sbjct:  266 ANTYPQFQHRGS---------EGEVEVE----RTIFSVRDLTDNSVTLRTERPALLLSSTSWTEDEDFSILLKALEEYEGFIKEGAS--LPSLVCVITGKGPQKQHYRKLIDSLHLEHVQICTPWLEAEDYPVLLGSADLGVCLHKSSSGLDLPMKVVDMFGCCLPVCAIHFDCLHELVKHGENGLIFRDSQELAEQLKSLLSEFPSSEGRLGLFRRNLRTSRGQRWDDNWDQNVLPLIA 490
[Close]
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Match: UPI001B88871F (chitobiosyldiphosphodolichol beta-mannosyltransferase-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88871F)

HSP 1 Score: 231 bits (589), Expect = 2.940e-67
Identity = 108/211 (51.18%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:  496 TPFTTRSVDGALELRRDRPALLVSSTSWTPDEDFSVLLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVAICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAVHFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVK--EVTRWRENWDEFAWPLFSKLGRL 1122
            T FT + V G +  R DRPAL+VSSTSWT DEDF +LLEAL+ ++ +    ++  LP ++  +TGKGP+K  Y + ++      V+ C  WL P+DYP+LLGSADLG+CLH S+SG+DLPMKVVDMFGC +PVCAVHFDC+ ELV+   NG +F +S +LA QLE LL GFP    +L+  RT VK  +  RW + W + A PLF+ + ++
Sbjct:  250 TVFTRKDVHGQITHREDRPALIVSSTSWTEDEDFGILLEALKLYE-KNVQTSTIHLPNIICAITGKGPQKDYYEKEIEKLNFKHVSFCLPWLTPEDYPLLLGSADLGVCLHKSSSGLDLPMKVVDMFGCELPVCAVHFDCISELVKHDVNGLIFSNSDELASQLEDLLQGFPSNRSKLKRLRTGVKMFQDVRWHDQWKKLALPLFTMVEKV 459
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13278.5900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM2_ECTSI4.290e-15762.69Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
A0A3Q3DUX2_HIPCM1.760e-7154.81ALG1 chitobiosyldiphosphodolichol beta-mannosyltra... [more]
UPI00094E93A27.760e-7054.55chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
A0A5D6XQY7_9STRA2.660e-6955.94Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A484E7Z0_BRELC6.770e-6952.11Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2I4D7U8_9TELE2.200e-6856.25chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
UPI001458E49D8.430e-6850.72chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
M4AFB2_XIPMA1.600e-6755.02Glycos_transf_1 domain-containing protein n=8 Tax=... [more]
UPI001B3AC45F2.300e-6750.83chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
UPI001B88871F2.940e-6751.18chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13278contigM-pyrifera_M_contig13278:4457..8598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.5
Seed ortholog evalue1.7e-129
Seed eggNOG ortholog2880.D7FIM2
Preferred nameALG1
KEGG koko:K03842
KEGG ReactionR05972
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000030,GO:0003006,GO:0003674,GO:0003824,GO:0004578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019187,GO:0019538,GO:0022414,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0048856,GO:0048868,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.chitobiosyldiphosphodolichol beta-mannosyltransferase activity
EggNOG OGsCOG0438@1,KOG2941@2759
EC2.4.1.142
COG Functional cat.M
CAZyGT33
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons3
Model size1359
Cds size1356
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13278.5900.1prot_M-pyrifera_M_contig13278.5900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13278 4457..8595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.620903-CDS-M-pyrifera_M_contig13278:4456..47591622815812.620903-CDS-M-pyrifera_M_contig13278:4456..4759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 4457..4759 -
1692277582.8085032-CDS-M-pyrifera_M_contig13278:4456..47591692277582.8085032-CDS-M-pyrifera_M_contig13278:4456..4759Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 4457..4759 -
1622815812.6336493-CDS-M-pyrifera_M_contig13278:5682..58971622815812.6336493-CDS-M-pyrifera_M_contig13278:5682..5897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 5683..5897 -
1692277582.81907-CDS-M-pyrifera_M_contig13278:5682..58971692277582.81907-CDS-M-pyrifera_M_contig13278:5682..5897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 5683..5897 -
1622815812.6455758-CDS-M-pyrifera_M_contig13278:7757..85951622815812.6455758-CDS-M-pyrifera_M_contig13278:7757..8595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 7758..8595 -
1692277582.8276513-CDS-M-pyrifera_M_contig13278:7757..85951692277582.8276513-CDS-M-pyrifera_M_contig13278:7757..8595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13278 7758..8595 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.6580195-UTR-M-pyrifera_M_contig13278:8595..85981622815812.6580195-UTR-M-pyrifera_M_contig13278:8595..8598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13278 8596..8598 -
1692277582.8368025-UTR-M-pyrifera_M_contig13278:8595..85981692277582.8368025-UTR-M-pyrifera_M_contig13278:8595..8598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13278 8596..8598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13278.5900.1

>prot_M-pyrifera_M_contig13278.5900.1 ID=prot_M-pyrifera_M_contig13278.5900.1|Name=mRNA_M-pyrifera_M_contig13278.5900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=452bp
MQNFGIREAYIVYDQPPEFFRAPTLSERHELFKKLAETSTDFADAVRAHK
AAAASAHADAASASASASASASASASAFDDAAAMVVDDGDAADDDAAAAA
TAAAVGSTESSSPTGPSDDPPDKPLQDDDDEAGPYPKKTHSGARHSRGGD
GVEGETQGEGGGERTPFTTRSVDGALELRRDRPALLVSSTSWTPDEDFSV
LLEALRRFDVRTASGASPSLPLVMVVVTGKGPEKAMYVERMKAARMSRVA
ICTAWLEPDDYPVLLGSADLGICLHTSTSGVDLPMKVVDMFGCGVPVCAV
HFDCLQELVRDGYNGCVFKDSTQLALQLEALLDGFPRGGCELEGYRTNVK
EVTRWRENWDEFAWPLFSKLGRLPPANKSAEGGEWSRRRGGGGGGGGGVW
EAGWSTAAMVEAVVVPAMALVILLVVVPSLPSRLEDWAVGAVANVADRWR
G*
back to top

mRNA from alignment at M-pyrifera_M_contig13278:4457..8598-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13278.5900.1 ID=mRNA_M-pyrifera_M_contig13278.5900.1|Name=mRNA_M-pyrifera_M_contig13278.5900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4142bp|location=Sequence derived from alignment at M-pyrifera_M_contig13278:4457..8598- (Macrocystis pyrifera P11B4 male)
ATAATGCAAAACTTTGGAATCCGGGAAGCGTACATCGTTTACGACCAGCC
TCCCGAGTTCTTCCGCGCCCCGACCTTGTCGGAGCGCCACGAGCTGTTCA
AGAAGCTGGCGGAGACGAGCACCGACTTCGCAGACGCTGTTCGCGCGCAT
AAGGCGGCAGCCGCTAGCGCTCACGCTGACGCCGCTTCCGCCTCTGCCTC
TGCCTCTGCCTCTGCCTCTGCCTCTGCGTCTGCCTTTGATGATGCAGCTG
CCATGGTAGTCGATGATGGCGATGCCGCCGATGATGATGCAGCAGCTGCC
GCTACTGCTGCCGCGGTGGGATCGACCGAATCGTCTTCACCGACCGGTCC
AAGCGACGACCCCCCTGACAAACCGCTGCAGGATGACGACGACGAAGCGG
GGCCGTACCCGAAAAAGACGCACAGCGGAGCGAGACATAGTAGGGGGGGG
GACGGGGTGGAGGGGGAGACGCAGGGAGAAGGGGGGGGGGAGCGAACCCC
GTTCACGACGCGCTCGGTTGACGGCGCGCTCGAGCTGCGCCGCGACCGGC
CTGCGCTGCTGGTGTCCTCGACCAGCTGGACCCCGGACGAAGACTTCTCG
GTTTTGCTGGAGGCGCTGCGGCGTTTCGATGTGCGCACGGCCTCGGGGGC
GTCGCCTTCCCTTCCGCTGGTGATGGTGGTGGTGACCGGGAAGGGCCCGG
AGAAGGCCATGTACGTGGAGCGGATGAAAGCGGCGAGGATGTCGAGGGTC
GCGATATGCACGGCCTGGCTGGAGCCGGACGACTACCCTGTTTTGCTGGG
GAGCGCCGACCTGGGCATCTGCCTGCACACGTCTACGTCGGGTGAGATTT
TGTTTTTCGTTTTCCGTGTGTTTTTTTGTTTGTTTGTTGTTTGTGTTTTT
GTGACTAGTGTGCGCAGAGTGTCTGCTTGTCTTTGCACGTTGGTGGGTGG
TTTTGCGTTGTACGTACATGTGTAGGGGGGGTGGAGGGGGTTTTCAGTAT
TCCAGCGTAAAGGTGCTATTAATAGGGTGTTGCGTGTGGATTGACGTTGG
GGGCGGGGGGGGAGTCGTGTGCGTATTCCCTTGTTTGGGTGCTGGGATGT
TAAGGATGTTTGAGCGTATGTGGACATATGCGTCTGTGTTGCCTTGTGTG
TTCGGGCGTGCGAGCGTGCGTCTGTGAGAACGTGAGCCTGTTCATCTGTG
CGTGTGGGGGATGACGTTGTTCTGCTACGAAGTTCAAACGATGTAGAGCG
CCTGCCTGTGCGTGGCACATAGGACCAGTCGCGGGGATCTGAAAATATAA
GTTATGCTCTATAGGGTCTTGTGTCGCGTTCACCGTATTGCTGGTGCGTC
GAAAATGCGGACGGACCGATGCTGACGGCGGCGATGTTGCCAGCGAAGGA
GCGGAAAGAATTTCGGGCAATAAATGCCCCAACGTTTGCGTGAGCGTCCA
GGTCAGGCGCAATGAAACCTATCGACGTAATTGTTATTCGTACCGCCTGC
ACAATTTGGTGTCGCGGTTTTGTTTACCGCATATACCACGGGCCCTTACC
GAGCCCACATCCTGTCAGCGTGTAAATAGAGGAAAACTTGTTTTTGCTGG
CTCTAGGATGAGATAGGTTGCTGCCGTCTAAGACACTATGGCTTGGCGTT
GATTCGCTCCGCCTGGTGCGTTCTACAGGTGCGGCGGTTGATGGCGTGCT
GGAAAGAGGTCCGGCAGAGACTGGTGGCGCTTCTCGTCTGCTCGAAAGAA
CATTAAACGAAACTCTTGGATGTATTCGTTCGACACGTAACCGGTAGCTT
TCTGTAGCGGTGGCCGCATCATAAAGACTCGATCCAGGGCGGAACGCTTG
TACACCTCCTCCTCCTCGCGGTAGCAAATCGTGGGCCCTCCCACGGCTCG
TCGTTTCTCAGTACACCTCGCTGTTCGCTCCAAAAAAAGCGCCTCACCTC
TTCCCATCCCCCAGTGTTCCGTCTCGAATGGGATGCGTGGTCAGTGATCA
AATGACTAAGGCACGCAGCAAATGAGTACGCCCCCACGTCCCTCTTGGCC
CCTATCCCCACTGTCTCTATTCGTGTATCCTGCCCTGCCCCCCACCCCCA
CCCCCACCCCCCTTGCCCCTCATATCCACCATCTCGATACGTGTATCTCG
ACCCCCCCCCCCAACCGGCCTCCACTCCTCGTACCCCCTAGTTCCACGCT
CTCTGCACGTTTCTCTCGAGCCATCCCGGTTTGTTGCTGAAGGGAAAGAC
GTGCTTCCCCCCATCCCTTTTGCCCCCGACCTCGGCCCTCTCTCTTTTTT
CATCCCGACCCTCTCTCGATTTGATCTCGACCTTCTCTCAGATTTATGTC
CCCCCTCTCTCTCCGTTTTCTCTCGACCTTCTCTTTACATGCTTTCCACG
ACTCGCTCTCTACACGCTACTCTCTACACTCTCTCTATACGTTTACCTCA
ATCCTCTCTTATGCTAAGTGTGCGTTTATATCACCCTCTTCATTCTAGTC
ATACACTTACCTCTACCCTCTCTCTATACGTTGACCACAACCCTCTCTAT
GCTAAGTGTACGTTTCTCTCACCCTCTTTATACTAATCATACACTTACCT
CAACCCTCTCTACACCAAGTATACATTTATCTCGACCCTCTCTCTCTGTA
GATATACGTTCAACTCAACCCGCCCCCCTCCCGTGTTTTTCTATTGTGAA
GGGGTCGACTTGCCGATGAAAGTGGTGGACATGTTCGGCTGCGGCGTCCC
CGTTTGCGCCGTGCACTTCGACTGCCTCCAGGAGCTCGTGCGGGACGGCT
ACAACGGGTGCGTGTTCAAGGACAGCACGCAGCTGGCCCTCCAGCTGGAA
GCGCTGCTCGACGGCTTCCCTCGGGGCGGGTGCGAGCTGGAAGGGTATCG
AACTAACGTAAAGGAGGTACGTACGGTGATGGTGCAGACGTCAGGAGGCG
CCGCCGTCCACAAACTGGGTGGAAGAAATGTGGTGTGGTTTTTTGTTTTT
GCTTGCGTCGCGTGTGTCCTTTCGTCGTGCCGTCTAATTTGTCTGCAAAG
CAGTTTGGTGATGCTCAAACGTTGCTGTGGCGGAGGTGTTGCACGCGAGC
TAGCTGTTCAGCTGGACTTGTGCCGCATGTACCAATCGTCACTTGTGTGC
GTGTTTTTGAGCCGCCCTTGCTCGATGTCCGACCAGGAGAAATATCCTCC
GTTCAGTCAATGATTGTGTGCCGAGGGGGGCCGGGCGGCGGAACCCGTGT
GTACCTCCACGCATTAACCGCTTCGGGTTGAGGGTACGATCACCTTTCTT
TAGCCTCCCGGACGGAGATAGAGCAACCCGCTGACAAACGTTTTTTTTTA
AATGAGCTTTAGCAGATCACCGGGCGCGAGCTACATAGAAGTCACTCAAG
GCCTCGCATGCATGCGCACGCACGATGACCGGATGAGCGTTAACGTTTCG
CCTTCGCCGCCCCGCGACTATACCCCCCCGTGCTTGATGGGGAGGCGCGC
TGTGCTATTACGGGGGTCCATAGTAAATAGGACCAAATATTGTTCGTAAA
AATAGGTAAATATATAGGTTTTGTGTATACCATAGGTCCTGTGAACTATG
GACCCCCGTAATATGAGCCCCGCATGACGAAGCCAACAACAACGAATAAT
AGCCCCCACTCGGCGCTTGGGGAAAGCATTGCCTGCCTGGTCGGTGAAAA
CCCGACGTGCCTCTGTCCCGGCATCGTAGGGAATGAGGGTCTATGGTCAT
ACGACTCCTGTACGACCTTGCATGACATATGTACCCCAGTCCTCCGCTTC
CCCCACCCCACCGGCGACGGCGGCGCTGCATACATACAGGTCACGCGATG
GAGGGAAAACTGGGATGAATTCGCGTGGCCGCTTTTTTCGAAGCTGGGAC
GGCTGCCACCCGCGAACAAGAGCGCCGAGGGTGGAGAGTGGAGCCGAAGG
CGCGGAGGTGGCGGCGGCGGCGGCGGCGGGGTCTGGGAAGCTGGGTGGTC
GACGGCGGCGATGGTGGAGGCGGTCGTGGTTCCGGCGATGGCGTTGGTGA
TCTTGCTTGTCGTCGTCCCCTCTCTTCCCAGCCGGCTCGAGGACTGGGCG
GTCGGGGCCGTGGCTAACGTTGCCGACCGCTGGCGGGGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13278:4457..8598-

>mRNA_M-pyrifera_M_contig13278.5900.1 ID=mRNA_M-pyrifera_M_contig13278.5900.1|Name=mRNA_M-pyrifera_M_contig13278.5900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2712bp|location=Sequence derived from alignment at M-pyrifera_M_contig13278:4457..8598- (Macrocystis pyrifera P11B4 male)
ATGCAAAACTTTGGAATCCGGGAAGCGTACATCGTTTACGACCAGCCTCC
CGAGTTCTTCCGCGCCCCGACCTTGTCGGAGCGCCACGAGCTGTTCAAGA
AGCTGGCGGAGACGAGCACCGACTTCGCAGACGCTGTTCGCGCGCATAAG
GCGGCAGCCGCTAGCGCTCACGCTGACGCCGCTTCCGCCTCTGCCTCTGC
CTCTGCCTCTGCCTCTGCCTCTGCGTCTGCCTTTGATGATGCAGCTGCCA
TGGTAGTCGATGATGGCGATGCCGCCGATGATGATGCAGCAGCTGCCGCT
ACTGCTGCCGCGGTGGGATCGACCGAATCGTCTTCACCGACCGGTCCAAG
CGACGACCCCCCTGACAAACCGCTGCAGGATGACGACGACGAAGCGGGGC
CGTACCCGAAAAAGACGCACAGCGGAGCGAGACATAGTAGGGGGGGGGAC
GGGGTGGAGGGGGAGACGCAGGGAGAAGGGGGGGGGGAGCGAACCCCGTT
CACGACGCGCTCGGTTGACGGCGCGCTCGAGCTGCGCCGCGACCGGCCTG
CGCTGCTGGTGTCCTCGACCAGCTGGACCCCGGACGAAGACTTCTCGGTT
TTGCTGGAGGCGCTGCGGCGTTTCGATGTGCGCACGGCCTCGGGGGCGTC
GCCTTCCCTTCCGCTGGTGATGGTGGTGGTGACCGGGAAGGGCCCGGAGA
AGGCCATGTACGTGGAGCGGATGAAAGCGGCGAGGATGTCGAGGGTCGCG
ATATGCACGGCCTGGCTGGAGCCGGACGACTACCCTGTTTTGCTGGGGAG
CGCCGACCTGGGCATCTGCCTGCACACGTCTACGTCGGATGCAAAACTTT
GGAATCCGGGAAGCGTACATCGTTTACGACCAGCCTCCCGAGTTCTTCCG
CGCCCCGACCTTGTCGGAGCGCCACGAGCTGTTCAAGAAGCTGGCGGAGA
CGAGCACCGACTTCGCAGACGCTGTTCGCGCGCATAAGGCGGCAGCCGCT
AGCGCTCACGCTGACGCCGCTTCCGCCTCTGCCTCTGCCTCTGCCTCTGC
CTCTGCCTCTGCGTCTGCCTTTGATGATGCAGCTGCCATGGTAGTCGATG
ATGGCGATGCCGCCGATGATGATGCAGCAGCTGCCGCTACTGCTGCCGCG
GTGGGATCGACCGAATCGTCTTCACCGACCGGTCCAAGCGACGACCCCCC
TGACAAACCGCTGCAGGATGACGACGACGAAGCGGGGCCGTACCCGAAAA
AGACGCACAGCGGAGCGAGACATAGTAGGGGGGGGGACGGGGTGGAGGGG
GAGACGCAGGGAGAAGGGGGGGGGGAGCGAACCCCGTTCACGACGCGCTC
GGTTGACGGCGCGCTCGAGCTGCGCCGCGACCGGCCTGCGCTGCTGGTGT
CCTCGACCAGCTGGACCCCGGACGAAGACTTCTCGGTTTTGCTGGAGGCG
CTGCGGCGTTTCGATGTGCGCACGGCCTCGGGGGCGTCGCCTTCCCTTCC
GCTGGTGATGGTGGTGGTGACCGGGAAGGGCCCGGAGAAGGCCATGTACG
TGGAGCGGATGAAAGCGGCGAGGATGTCGAGGGTCGCGATATGCACGGCC
TGGCTGGAGCCGGACGACTACCCTGTTTTGCTGGGGAGCGCCGACCTGGG
CATCTGCCTGCACACGTCTACGTCGGGGGTCGACTTGCCGATGAAAGTGG
TGGACATGTTCGGCTGCGGCGTCCCCGTTTGCGCCGTGCACTTCGACTGC
CTCCAGGAGCTCGTGCGGGACGGCTACAACGGGTGCGTGTTCAAGGACAG
CACGCAGCTGGCCCTCCAGCTGGAAGCGCTGCTCGACGGCTTCCCTCGGG
GCGGGTGCGAGCTGGAAGGGTATCGAACTAACGTAAAGGAGGGGTCGACT
TGCCGATGAAAGTGGTGGACATGTTCGGCTGCGGCGTCCCCGTTTGCGCC
GTGCACTTCGACTGCCTCCAGGAGCTCGTGCGGGACGGCTACAACGGGTG
CGTGTTCAAGGACAGCACGCAGCTGGCCCTCCAGCTGGAAGCGCTGCTCG
ACGGCTTCCCTCGGGGCGGGTGCGAGCTGGAAGGGTATCGAACTAACGTA
AAGGAGGTCACGCGATGGAGGGAAAACTGGGATGAATTCGCGTGGCCGCT
TTTTTCGAAGCTGGGACGGCTGCCACCCGCGAACAAGAGCGCCGAGGGTG
GAGAGTGGAGCCGAAGGCGCGGAGGTGGCGGCGGCGGCGGCGGCGGGGTC
TGGGAAGCTGGGTGGTCGACGGCGGCGATGGTGGAGGCGGTCGTGGTTCC
GGCGATGGCGTTGGTGATCTTGCTTGTCGTCGTCCCCTCTCTTCCCAGCC
GGCTCGAGGACTGGGCGGTCGGGGCCGTGGCTAACGTTGCCGACCGCTGG
CGGGGGTAGGTCACGCGATGGAGGGAAAACTGGGATGAATTCGCGTGGCC
GCTTTTTTCGAAGCTGGGACGGCTGCCACCCGCGAACAAGAGCGCCGAGG
GTGGAGAGTGGAGCCGAAGGCGCGGAGGTGGCGGCGGCGGCGGCGGCGGG
GTCTGGGAAGCTGGGTGGTCGACGGCGGCGATGGTGGAGGCGGTCGTGGT
TCCGGCGATGGCGTTGGTGATCTTGCTTGTCGTCGTCCCCTCTCTTCCCA
GCCGGCTCGAGGACTGGGCGGTCGGGGCCGTGGCTAACGTTGCCGACCGC
TGGCGGGGGTAG
back to top