mRNA_M-pyrifera_M_contig13102.5848.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13102.5848.1
Unique NamemRNA_M-pyrifera_M_contig13102.5848.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13102.5848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13102contigM-pyrifera_M_contig13102:1160..6452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size855
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13102.5848.1prot_M-pyrifera_M_contig13102.5848.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13102 1160..6452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.7413938-CDS-M-pyrifera_M_contig13102:1159..12221622815807.7413938-CDS-M-pyrifera_M_contig13102:1159..1222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 1160..1222 +
1692277579.9553404-CDS-M-pyrifera_M_contig13102:1159..12221692277579.9553404-CDS-M-pyrifera_M_contig13102:1159..1222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 1160..1222 +
1622815807.7518744-CDS-M-pyrifera_M_contig13102:1693..17621622815807.7518744-CDS-M-pyrifera_M_contig13102:1693..1762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 1694..1762 +
1692277579.9651313-CDS-M-pyrifera_M_contig13102:1693..17621692277579.9651313-CDS-M-pyrifera_M_contig13102:1693..1762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 1694..1762 +
1622815807.7614539-CDS-M-pyrifera_M_contig13102:2132..22011622815807.7614539-CDS-M-pyrifera_M_contig13102:2132..2201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 2133..2201 +
1692277579.972429-CDS-M-pyrifera_M_contig13102:2132..22011692277579.972429-CDS-M-pyrifera_M_contig13102:2132..2201Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 2133..2201 +
1622815807.7717912-CDS-M-pyrifera_M_contig13102:2592..27301622815807.7717912-CDS-M-pyrifera_M_contig13102:2592..2730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 2593..2730 +
1692277579.9801595-CDS-M-pyrifera_M_contig13102:2592..27301692277579.9801595-CDS-M-pyrifera_M_contig13102:2592..2730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 2593..2730 +
1622815807.7823439-CDS-M-pyrifera_M_contig13102:5233..53161622815807.7823439-CDS-M-pyrifera_M_contig13102:5233..5316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 5234..5316 +
1692277579.988544-CDS-M-pyrifera_M_contig13102:5233..53161692277579.988544-CDS-M-pyrifera_M_contig13102:5233..5316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 5234..5316 +
1622815807.7963088-CDS-M-pyrifera_M_contig13102:6019..64521622815807.7963088-CDS-M-pyrifera_M_contig13102:6019..6452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 6020..6452 +
1692277579.9972162-CDS-M-pyrifera_M_contig13102:6019..64521692277579.9972162-CDS-M-pyrifera_M_contig13102:6019..6452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13102 6020..6452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13102.5848.1

>prot_M-pyrifera_M_contig13102.5848.1 ID=prot_M-pyrifera_M_contig13102.5848.1|Name=mRNA_M-pyrifera_M_contig13102.5848.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=285bp
WPKGKRYRGRRKEGEREAARYGWHMWTDGRTFDGQWKDGKPHGLGTWTSP
RGESYEGHLFKGKKSGKGIFTHPDGKTYSGDWLLGLRHGEGTRDYPDGSS
YIGSWVEDKRHGWGKYTWKDGRVWVGEWREGNPTKVSNSDMEMRELRELS
TAVDRAEKTALEGSAGGVGGGESDNERRGTGSTLEETLTGSESGGASDRG
VDSAAVSDTGGSRRGEGEGRHRNTRSIRGFSALSEQEQQQQRQQQQKIEK
LKEQRLLQHQEMERLKEQKQQQEQEQEQDSQRQQQ
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mRNA from alignment at M-pyrifera_M_contig13102:1160..6452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13102.5848.1 ID=mRNA_M-pyrifera_M_contig13102.5848.1|Name=mRNA_M-pyrifera_M_contig13102.5848.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5293bp|location=Sequence derived from alignment at M-pyrifera_M_contig13102:1160..6452+ (Macrocystis pyrifera P11B4 male)
TGGCCCAAGGGGAAACGTTACAGAGGGCGAAGGAAGGAGGGGGAGCGGGA
AGCGGCGAGGTACGTATCTCAGTATCTGACAAGCTGACTGGTCCATGCTT
TGTGTTCCCCGACACGTAGCCAATCTCGCTGCCCCGCCGTGCTTGTATCC
AAGAAGTTGCTTTATAACCGTAACGATGTAACCGCTTCAACTATGTGACT
ACGTACCTTAAAAATATGAACCGAAAGCACGTACCTGACAAACCGTTAAC
GATTTGACTACTGCTTGTAACATCGTAACTACTGTGTTTTATCGAGGTTT
CAAAGGAGATTTTGCGCAAGTGACCAACCGCCCTTCACTCGAGTAAATTT
TTTGAAAAAGGTGTGGTTCCAGACTATGTTCCAAAGTTTGGAGCCATCTG
ATCGGATGCCGAGTTAACCATGACAACATTACCACCGTAACAGCAGTACA
ACCATAACAACGTAGACCGAAACCCTAGCCTAGAACGCTGTCCAATGTAA
CATTGACAATGTAGCCGTCATTTGATTTGGACAGGGTTGGCACATGTGGA
CCGACGGCAGGACTTTCGACGGGCAGTGGAAGGACGGGAAGCCGCACGGC
CTGGTAAGAGAAGAGGGGGTTACATCGAACGGTCAACATAGCGCCGGCCC
ACTCGTCCCCTAGTCCGCCTCCCGAAGAAGGCCGGTGCCATCCCTAGGCT
TGCAGTAGGCTGCGCTAGATTTGGGACGGCGGCCCTAGCTTTTTGTCGTG
TCTGCCCTAGATTTGTAACTGTTGCCCTTTGACATTTAGTCGCCGTGTTT
TGTAGTGGCTGCGCTTCGACTTATAGATGGACTCCCTTCAGGTTGGCCTT
GGCTGCTTTTGGTCTGAATCAAAGGTATCTTCTCTTGGCTTGTTTTCGTA
GCTGACTCGAAATTACGTAAATCACTTTTTTTCTGGCCTCCGTTTTTTTT
CTTGCTGATTTTCGTGATTGCAGGGCACCTGGACTTCCCCGCGCGGAGAG
TCGTACGAGGGGCATCTCTTCAAGGGGAAGAAGAGCGGAAAGGTGATACT
TTGTGGTGTCTTGCTTTCTCTTATTTAATAGTCTTTTTTCAGATTGTCTT
TGTTGTCTCGTCATTGCTCGTATATCTCTTGGTTTTGTTCGGCGCTATGT
TATCAACAGTGAATATTGAAACCCTAAATGATTGCGCTCCGTTGTGGAGA
CAGATCGCTTACCAGGTATATTTTATTTTAGTATATATTAATAGTCGTAT
TTAGTTTTTGTAATATAGTCTATGCTAAAAAGGGTGGCAGGACCACACTC
CCGTGCTTGGATTTCAAGTGAGATGTACGTTGCTATCCGGTGAATACGAT
AAGGGTTGAAGAGTGGCGACTCATGAGCACCTGGTGTGCTACTATTTAGT
AATAAAACTATCGTTACGCGAAAACTTGTGCAGGGCATCTTCACGCACCC
CGATGGCAAGACTTACAGCGGCGACTGGCTGTTAGGCCTCCGCCATGGGG
AAGGGACAAGGGACTACCCCGACGGGAGCTCGTACATTGGGTCGTGGGTC
GAAGACAAGAGACACGGTTGGGTGAGAGAACGCAGAGAGATATGGATGGG
GAGAGGGGAGGGGGGGAGGGTGGAAGAAAGAGGGAGAGGGAGAGGGGGTA
TGTGGGGGAGCAGTAGGGGTAGAAGGTGGAAGATGTCTTGGATTGAAAAG
GATTCTTGGTGTGTTCGTGTTGGCATTGATGTTGGTGTTGAGGTCTGTGT
CGGTGTTGCTGTTGTTGTGCTGTTGTGGGTGGTGCTATTGTTGGTGCTGG
AGTTTGTGCTGGCGGTGTTGTCAACGTTTTGTGTTGGTGCTGGCATTGCT
TGGCTGTTGTGGGCATTCGTGTTTTCGTGTTGTTGCTGATGCTGGTGCTG
GCATAGGTAATTGTGTAGGTGTTGGTATTGACATTGGTGTTGAGTACAAG
TATTGATTGCGTTGATAGTCTATGTTTGGGTTTGGGTTTGGCGTTGGTAT
TGATATTGGTGTTGGTTCTGTGTTGCTTACTTACTAGTATTACGGGGGAC
CGTAAGAAATAGGACCTACGGTACACACGAAACCTGTACATGTCCCTATC
TTCACTAACAATATTGGGTCCTATTTACTACGGCCCCCCGTAATGGTATA
CTGAAGTATACGTTTGTTTGTGTTGGTGGTGTTGGTGGTTCACGTACCGT
TCGCGTAGCAGTACGTGACTGCCATGTCCAGATACTTGCTTTTTTTAAAA
AATAGAAATAGGGCAGGTCGCCAGGAACAAGTTTTCGGATACTTGCCAAC
GATGGCTCAAGAGGACAGCAGCATACTTCGATACTCCTGTGTACTGTACT
TTGTTCCTTTCCAGCAGCGTTTCAGCCATTTTATCTCCACCCGCTATCAT
ATGCTTCGGGTTGCCCCACTGAATGCAAACAATTTGACGTCGATAGTAAC
GCTGACCGTATCGTTGGGAACACAACTTGCGGGCGGGTGACAAACCGGAA
TTGTCAGCTGTGCCTTCGCTGGCATTGTACTCGTACGTACTGGCTTATTG
CGGTGTACCAGGTGTATGCCTGATGCCATCTTCGCCGGGCGAGTCAGTTG
TGCCTCTGCTCGTATTTTATTCGCACTGGAATGTTGTCCCTGCTTTTTGT
ACTGGGCATATGTCGCAGTAGCACGAACAACCCTCATTATTCCTACACCT
GTTGGGGCGACAAACTGCCTGTAATAACCTCACTATCGATAGTTTTGTTT
TTGCGCTCCCGGAAGATGCCGGAATTTCTGTGAACCTGTCAAGATACGGA
TATATGTGTATGTATATCGGGTATATGTCACAGTAAACTGGGTAGACTTC
TGCTCCTGTGGACGGAATGTAAGGACCGTGAGACACTGATTTCCATACAC
CAACGGCGCTTACATTTCCGTCCAAATTGGTGCCTGGTATAGTACTATCA
TTACAACCACCGTGCCAGTGAGCGCTAAATATCAAGGTACGAGTGAGTCG
ATTCTGACGGCGAGATAACTTGCCATATATCCGGGAAACTAGCTGGAAAA
CAATCGCATAAACGTTCTTCGAACAACAAAATATTTGTTGATAAGATGTG
TGCGTGCATCAATCAGTCTGCTTGTTGCATGTTTCCTTCAGTTGCTCCTA
CGTAGTACTCGTGCCATGTGTATGTTTGCGTTGGTGTGTACTTTAGGCCC
AACGCTTCAATTCGGGGTGAACAGGAAAGTTCTCACTGACAGATCATGTG
GATAAAACAAATCCTGATCTGCCGCCACGAGATATTTTGCGTAGGACCTG
TGTAGTACAGATCCAATCCACGAAACATTTGCGATATCATGCAGATTACA
AGGGTTCCACCAAGCAAGATGAGCTACTGTATTCTAGATCATATCCACAG
ATCAGGCACATATTTCCCTGAACGATCTACTCTATATCATTATGCGGGAA
TCGGTGATGTAGAAGGTGTGAAACTTGTTGAGATATGACGTCGGTGTTTT
GAGGTAGTGGAGGAAACCTTGCACGCGTACGTACTCGTACGCACTGCTTG
TTGCGCCCAACGAAATGCACAAAAAGTAGTTGCCGCTGCAGGCCTGTACT
GCAAGCAAGTTGGGCTGTTTTTTTTTGGTGCACGCTCCCCCCTCATGACC
CAAGACCTAAGACTCGTGGGCGATAAGTTCAGACTGATCTACAACGCCAG
GTTGATTTATCATGGCTGAAAACATGACTAATATCAAACGTCGTGACCGA
CATTTCGAGGGCCATGTTACACCTCATGGCTGATTCATGATGGCTGCTAA
CTCATTACTGAGAAGCCCATTACTGTTATTTCATGGGCTCAAAGACCAAG
ACTGATATTTACGACTGATGAAACCCATGACTGGCTGATATCTCCTTACT
GATATCTAACTGGTGGGTGATCACTCATGACTGATAATTCATAGCTCATA
AACCAAGACTTATATTTCACGACCGATAAAGCTTATGGCGACGTTTTTAG
CTAGTTTTTTTTCGCTGTAGAACCCGGGGATGAACAATTTCGCCCCGCCC
CCCTTGTGTACCCGGTGTGTGCAGGGTAAGTACACTTGGAAGGACGGACG
GGTCTGGGTCGGAGAGTGGAGAGAGGGGAACCCGACGAAGGTGAGCAATA
GCGACATGTTCATGCCTACGTAGCGTGCGTTAAATAACACTTTAGCGCGT
TAGCAGTTGAGCCGTTCAGATGTAGCGTGTACCCAAATGGGGGCGCCTCA
GAATTGCCCATGTGAAGCTGTAGCTGTAGCTGTTGTTGTTGTGATCGATG
ATGTCGTTGACGTCATCTCCCGTGAAATAAACGATTTATTCCCTCACACT
AGCTCATCAAGTAATCGATTAATTATTTTCACCCACCGTTACCCTCTGAC
ATTGATGCTGATGTTTATCTCTTGCTGTGGTCGCCCGTATTGCTGTTGCT
GTTGTTGCTGTTGTTGTGTCGCACAATGAACAGGACGCACCAGGCCGTTC
CCTCAGCGGGCACCACCGCATCAGCTCCTCGGAGGGAGTCAACACTCTAG
AGGGCTCGGAGCCCAGCGATGCTTCCGGCCAGACCAGCAACGCTGCGGAC
ACAAGCCTCTCCGGTAACAGCCTAGGCCTTCCCGACAACGGTGTCCCCCC
TCCCCCAACCGCCCTGGCCCCCCAACCCGCCCACAACTCCCACCACCAGC
CCCAGCAGCAACAGCAACAGCGAAGGAAGGAGGCTGGGCGAGTCTCTGGT
GGGTTTCCCCCCATGGCTCCGGAGTCGAGGACCAAGCAGGTAATCACCAA
CAACCCCGCTACCGCCATATCTACCTCAATTTCGTCCGCCTCCGCTGCTG
CCGCGATGAGGGAGATGCGCGAGCTCAGGGAGTTATCTACCGCAGTCGAC
CGGGCCGAAAAGACTGCCCTGGAGGGGTCGGCAGGTGGAGTGGGAGGGGG
GGAAAGCGACAATGAGAGGAGGGGGACAGGTTCGACTCTGGAGGAGACGC
TTACGGGGTCGGAATCCGGTGGTGCATCTGACAGGGGAGTTGATAGTGCG
GCCGTGAGCGATACCGGTGGGTCTCGGCGAGGAGAGGGTGAGGGGAGGCA
CAGGAATACTCGCAGCATCCGCGGATTTTCGGCGTTGTCCGAGCAGGAGC
AGCAGCAGCAACGGCAGCAGCAGCAGAAGATCGAGAAGTTGAAAGAGCAG
CGGCTGCTGCAGCACCAAGAGATGGAGAGGCTAAAGGAGCAGAAGCAGCA
GCAGGAGCAGGAGCAGGAGCAGGATTCTCAGAGGCAACAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13102:1160..6452+

>mRNA_M-pyrifera_M_contig13102.5848.1 ID=mRNA_M-pyrifera_M_contig13102.5848.1|Name=mRNA_M-pyrifera_M_contig13102.5848.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig13102:1160..6452+ (Macrocystis pyrifera P11B4 male)
TGGCCCAAGGGGAAACGTTACAGAGGGCGAAGGAAGGAGGGGGAGCGGGA
AGCGGCGAGGTACTGGCCCAAGGGGAAACGTTACAGAGGGCGAAGGAAGG
AGGGGGAGCGGGAAGCGGCGAGGTACGGTTGGCACATGTGGACCGACGGC
AGGACTTTCGACGGGCAGTGGAAGGACGGGAAGCCGCACGGCCTGGGTTG
GCACATGTGGACCGACGGCAGGACTTTCGACGGGCAGTGGAAGGACGGGA
AGCCGCACGGCCTGGGCACCTGGACTTCCCCGCGCGGAGAGTCGTACGAG
GGGCATCTCTTCAAGGGGAAGAAGAGCGGAAAGGGCACCTGGACTTCCCC
GCGCGGAGAGTCGTACGAGGGGCATCTCTTCAAGGGGAAGAAGAGCGGAA
AGGGCATCTTCACGCACCCCGATGGCAAGACTTACAGCGGCGACTGGCTG
TTAGGCCTCCGCCATGGGGAAGGGACAAGGGACTACCCCGACGGGAGCTC
GTACATTGGGTCGTGGGTCGAAGACAAGAGACACGGTTGGGGCATCTTCA
CGCACCCCGATGGCAAGACTTACAGCGGCGACTGGCTGTTAGGCCTCCGC
CATGGGGAAGGGACAAGGGACTACCCCGACGGGAGCTCGTACATTGGGTC
GTGGGTCGAAGACAAGAGACACGGTTGGGGTAAGTACACTTGGAAGGACG
GACGGGTCTGGGTCGGAGAGTGGAGAGAGGGGAACCCGACGAAGGTGAGC
AATAGCGACATGGTAAGTACACTTGGAAGGACGGACGGGTCTGGGTCGGA
GAGTGGAGAGAGGGGAACCCGACGAAGGTGAGCAATAGCGACATGGAGAT
GCGCGAGCTCAGGGAGTTATCTACCGCAGTCGACCGGGCCGAAAAGACTG
CCCTGGAGGGGTCGGCAGGTGGAGTGGGAGGGGGGGAAAGCGACAATGAG
AGGAGGGGGACAGGTTCGACTCTGGAGGAGACGCTTACGGGGTCGGAATC
CGGTGGTGCATCTGACAGGGGAGTTGATAGTGCGGCCGTGAGCGATACCG
GTGGGTCTCGGCGAGGAGAGGGTGAGGGGAGGCACAGGAATACTCGCAGC
ATCCGCGGATTTTCGGCGTTGTCCGAGCAGGAGCAGCAGCAGCAACGGCA
GCAGCAGCAGAAGATCGAGAAGTTGAAAGAGCAGCGGCTGCTGCAGCACC
AAGAGATGGAGAGGCTAAAGGAGCAGAAGCAGCAGCAGGAGCAGGAGCAG
GAGCAGGATTCTCAGAGGCAACAGCAGGGAGATGCGCGAGCTCAGGGAGT
TATCTACCGCAGTCGACCGGGCCGAAAAGACTGCCCTGGAGGGGTCGGCA
GGTGGAGTGGGAGGGGGGGAAAGCGACAATGAGAGGAGGGGGACAGGTTC
GACTCTGGAGGAGACGCTTACGGGGTCGGAATCCGGTGGTGCATCTGACA
GGGGAGTTGATAGTGCGGCCGTGAGCGATACCGGTGGGTCTCGGCGAGGA
GAGGGTGAGGGGAGGCACAGGAATACTCGCAGCATCCGCGGATTTTCGGC
GTTGTCCGAGCAGGAGCAGCAGCAGCAACGGCAGCAGCAGCAGAAGATCG
AGAAGTTGAAAGAGCAGCGGCTGCTGCAGCACCAAGAGATGGAGAGGCTA
AAGGAGCAGAAGCAGCAGCAGGAGCAGGAGCAGGAGCAGGATTCTCAGAG
GCAACAGCAG
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