mRNA_M-pyrifera_M_contig13018.5822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13018.5822.1
Unique NamemRNA_M-pyrifera_M_contig13018.5822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: D7FMZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ0_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.470e-30
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   28 REGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASA 393
            R G GRPKGR+G K+L E++ TYKA V+ GQL  A +  RDL  AML A V VDK +    PAFLKRQ+NRGV R  ALRK T+ R QL KAALAA A +  WE+GV YFR V KE   A A
Sbjct:   20 RGGAGRPKGRFGRKRLHEMMATYKARVEQGQLEFADMHVRDLSTAMLDAAVEVDKHEEVWRPAFLKRQSNRGVRRAEALRKLTKHRSQLEKAALAATACKAGWEKGVEYFRAVVKECRSAVA 141          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 9.250e-26
Identity = 75/160 (46.88%), Postives = 90/160 (56.25%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASA------------------LLVSHAQAGKL 426
             PP KRGG R G GRPKG YG K+LR+  Q     ++ GQL  A + +RDLP AM  A     +++    PAFLKRQ+NRGV RK ALRK  + R QL KAA+A+ A R  WE G  YFR V KE    S+                  +LVSHAQAG L
Sbjct:  134 APPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAMSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSL 293          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.230e-25
Identity = 77/151 (50.99%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASA---------LLVSHAQAGKL 426
             P  K GG R G GRPKG YG K++RE  Q     ++ GQ   A IA+RDLP  ML A   V + Q    PAFLKRQ+NRGV RK ALRK  + R QL KAA A+ A R  WE+G  YFR V KE   A A         +LVSHAQAG L
Sbjct:  128 APAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSL 278          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.600e-25
Identity = 77/151 (50.99%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASA---------LLVSHAQAGKL 426
             P  K GG R G GRPKG YG K++RE  Q     ++ GQ   A IA+RDLP  ML A   V + Q    PAFLKRQ+NRGV RK ALRK  + R QL KAA A+ A R  WE+G  YFR V KE   A A         +LVSHAQAG L
Sbjct:  128 APAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSL 278          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.410e-24
Identity = 70/151 (46.36%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASAL---------LVSHAQAGKL 426
             PP KRGG R G GRPKG YG  +LR+  Q     ++ GQL  A + +RDLP AML A     +++    PAFLKRQ+NRG+ RK ALRK  + + QL+K A A+ A R  WE+G    R V KE   A A+         LVSH+QAG L
Sbjct:   47 APPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVLVSHSQAGSL 197          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.480e-19
Identity = 66/144 (45.83%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQA--QVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASALLVSHAQAGKL 426
             PP  RGG R G GRPKG YG K+L +  Q     ++ GQL  A + +RDLP AM  A  + H  +       AFLKRQ+N    RK ALRK T+ R QL KAA A+ A R  WE+G  YFR V KE   A A+  +   AG L
Sbjct:   89 APPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAMSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLNAGSL 229          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.760e-17
Identity = 53/97 (54.64%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  163 MLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASALL---------VSHAQAGKL 426
            ML A   VDK + D  PAFLKRQ+NRGV RK ALRK  + R QL KA+LA+ A +  WE+G+ YFR V KE  GA A           VSHAQAGKL
Sbjct:    1 MLAASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSHAQAGKL 97          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.510e-15
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGVC 249
            TPP KR G  EG GRPKG +G K+LR +L  Y+  ++LGQ+    +  RDL +AML A   V+K + D  PAFLKRQ+NRGVC
Sbjct:  122 TPPPKRPGY-EGAGRPKGTFGRKRLRAMLDRYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNRGVC 203          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.390e-12
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARDLPAAMLQAQVHVDKRQADSDPAFLKRQANRGV 246
            TPP KR G  EG GRPKG +G K+LR +L  Y+  ++LGQ+    +  RDL +AML A   V+K + D  PAFLKRQ+NR V
Sbjct:  122 TPPPKRPGY-EGAGRPKGTFGRKRLRAMLDRYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNRDV 202          
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.620e-12
Identity = 46/81 (56.79%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  211 PAFLKRQANRGVCRKVALRKFTRARLQLRKAALAARARRENWEQGVAYFRGVEKEYLGASAL---------LVSHAQAGKL 426
            PAFLKRQ+NRGV RK ALRK  + R QL KAA A+ A R  WE+G  YFR V KE   A A+         LVSHAQAG L
Sbjct:   17 PAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVLVSHAQAGSL 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13018.5822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FMZ0_ECTSI2.470e-3058.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVH8_9PHAE9.250e-2646.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE1.230e-2550.99Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE1.600e-2550.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUL0_9PHAE6.410e-2446.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE4.480e-1945.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V5_ECTSI2.760e-1754.64Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JPF3_9PHAE1.510e-1553.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEX5_9PHAE2.390e-1251.22Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDJ5_9PHAE4.620e-1256.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13018contigM-pyrifera_M_contig13018:8387..8812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.747258-CDS-M-pyrifera_M_contig13018:8386..88121622815805.747258-CDS-M-pyrifera_M_contig13018:8386..8812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13018 8387..8812 +
1692277578.7482483-CDS-M-pyrifera_M_contig13018:8386..88121692277578.7482483-CDS-M-pyrifera_M_contig13018:8386..8812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13018 8387..8812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13018.5822.1prot_M-pyrifera_M_contig13018.5822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13018 8387..8812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13018.5822.1

>prot_M-pyrifera_M_contig13018.5822.1 ID=prot_M-pyrifera_M_contig13018.5822.1|Name=mRNA_M-pyrifera_M_contig13018.5822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
TPPEKRGGIREGGGRPKGRYGGKKLRELLQTYKAAVKLGQLAHAHIAARD
LPAAMLQAQVHVDKRQADSDPAFLKRQANRGVCRKVALRKFTRARLQLRK
AALAARARRENWEQGVAYFRGVEKEYLGASALLVSHAQAGKL
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mRNA from alignment at M-pyrifera_M_contig13018:8387..8812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13018.5822.1 ID=mRNA_M-pyrifera_M_contig13018.5822.1|Name=mRNA_M-pyrifera_M_contig13018.5822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig13018:8387..8812+ (Macrocystis pyrifera P11B4 male)
ACACCGCCTGAAAAACGCGGCGGAATACGGGAGGGGGGCGGCAGGCCGAA GGGACGCTATGGCGGGAAGAAGCTGCGGGAGCTTTTACAGACCTACAAAG CGGCGGTCAAGCTCGGGCAGCTTGCACATGCGCACATCGCCGCTCGGGAC CTTCCTGCCGCGATGTTGCAAGCGCAAGTCCATGTGGACAAACGTCAGGC AGACTCCGACCCAGCTTTCCTCAAGCGTCAAGCCAACAGGGGCGTGTGTA GGAAGGTTGCTCTTCGCAAGTTTACAAGGGCGAGGTTGCAGCTTAGGAAG GCGGCTTTAGCGGCCCGAGCGCGCCGGGAGAACTGGGAGCAGGGCGTCGC CTACTTCAGAGGCGTGGAAAAGGAGTACCTTGGTGCTTCTGCTCTACTTG TTTCTCACGCGCAAGCGGGGAAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13018:8387..8812+

>mRNA_M-pyrifera_M_contig13018.5822.1 ID=mRNA_M-pyrifera_M_contig13018.5822.1|Name=mRNA_M-pyrifera_M_contig13018.5822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig13018:8387..8812+ (Macrocystis pyrifera P11B4 male)
ACACCGCCTGAAAAACGCGGCGGAATACGGGAGGGGGGCGGCAGGCCGAA
GGGACGCTATGGCGGGAAGAAGCTGCGGGAGCTTTTACAGACCTACAAAG
CGGCGGTCAAGCTCGGGCAGCTTGCACATGCGCACATCGCCGCTCGGGAC
CTTCCTGCCGCGATGTTGCAAGCGCAAGTCCATGTGGACAAACGTCAGGC
AGACTCCGACCCAGCTTTCCTCAAGCGTCAAGCCAACAGGGGCGTGTGTA
GGAAGGTTGCTCTTCGCAAGTTTACAAGGGCGAGGTTGCAGCTTAGGAAG
GCGGCTTTAGCGGCCCGAGCGCGCCGGGAGAACTGGGAGCAGGGCGTCGC
CTACTTCAGAGGCGTGGAAAAGGAGTACCTTGGTGCTTCTGCTCTACTTG
TTTCTCACGCGCAAGCGGGGAAGCTGACACCGCCTGAAAAACGCGGCGGA
ATACGGGAGGGGGGCGGCAGGCCGAAGGGACGCTATGGCGGGAAGAAGCT
GCGGGAGCTTTTACAGACCTACAAAGCGGCGGTCAAGCTCGGGCAGCTTG
CACATGCGCACATCGCCGCTCGGGACCTTCCTGCCGCGATGTTGCAAGCG
CAAGTCCATGTGGACAAACGTCAGGCAGACTCCGACCCAGCTTTCCTCAA
GCGTCAAGCCAACAGGGGCGTGTGTAGGAAGGTTGCTCTTCGCAAGTTTA
CAAGGGCGAGGTTGCAGCTTAGGAAGGCGGCTTTAGCGGCCCGAGCGCGC
CGGGAGAACTGGGAGCAGGGCGTCGCCTACTTCAGAGGCGTGGAAAAGGA
GTACCTTGGTGCTTCTGCTCTACTTGTTTCTCACGCGCAAGCGGGGAAGC
TG
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