mRNA_M-pyrifera_M_contig1300.5817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1300.5817.1
Unique NamemRNA_M-pyrifera_M_contig1300.5817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1300.5817.1 vs. uniprot
Match: D8LKQ6_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 7.270e-14
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:    6 LVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQCWAMQIFVRLG 164
            L+ NE I+R VDVC  YVLDS +RGRDWL E+  +D+TLRSQCWA+  ++R+G
Sbjct:  186 LINNELIDRHVDVCEAYVLDSVSRGRDWLAEMGGLDVTLRSQCWAVAAYIRIG 238
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BLAST of mRNA_M-pyrifera_M_contig1300.5817.1 vs. uniprot
Match: D8LEX6_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:    6 LVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQ 131
            L+F E I R  D+C  YVLDS++RGRDWL E+A +DLTLR+Q
Sbjct:  206 LLFTELIARQTDMCAAYVLDSASRGRDWLAEVAGVDLTLRTQ 247
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BLAST of mRNA_M-pyrifera_M_contig1300.5817.1 vs. uniprot
Match: A0A6H5KDE6_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.130e-7
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:    6 LVFNEFIERVVDVCYDYVLDSSARGRDWLTELAAIDLTLRSQC--WAM 143
            L+ NE I+R VDVC  YVLDS +RGRDWL E+  +D+TLRSQ   W M
Sbjct:  262 LLNNELIDRNVDVCEAYVLDSVSRGRDWLAEMGGLDVTLRSQTTVWKM 309
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1300.5817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKQ6_ECTSI7.270e-1460.38Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
D8LEX6_ECTSI1.740e-761.90Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KDE6_9PHAE2.130e-760.42Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1300contigM-pyrifera_M_contig1300:12423..14496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size488
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1300.5817.1prot_M-pyrifera_M_contig1300.5817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1300 14176..14496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.2021945-UTR-M-pyrifera_M_contig1300:12422..125531622815805.2021945-UTR-M-pyrifera_M_contig1300:12422..12553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1300 12423..12553 +
1692277578.4457805-UTR-M-pyrifera_M_contig1300:12422..125531692277578.4457805-UTR-M-pyrifera_M_contig1300:12422..12553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1300 12423..12553 +
1622815805.2210026-UTR-M-pyrifera_M_contig1300:14139..141751622815805.2210026-UTR-M-pyrifera_M_contig1300:14139..14175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1300 14140..14175 +
1692277578.4556327-UTR-M-pyrifera_M_contig1300:14139..141751692277578.4556327-UTR-M-pyrifera_M_contig1300:14139..14175Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1300 14140..14175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815805.2352138-CDS-M-pyrifera_M_contig1300:14175..144961622815805.2352138-CDS-M-pyrifera_M_contig1300:14175..14496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 14176..14496 +
1692277578.4645574-CDS-M-pyrifera_M_contig1300:14175..144961692277578.4645574-CDS-M-pyrifera_M_contig1300:14175..14496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1300 14176..14496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1300.5817.1

>prot_M-pyrifera_M_contig1300.5817.1 ID=prot_M-pyrifera_M_contig1300.5817.1|Name=mRNA_M-pyrifera_M_contig1300.5817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MLIDSLDDRATTCNMSCRSLWDEYYCSRDGEEDLPSLQGHHRHRGSLARY
VEIFLYMLSVSAALRYGIPCGEKVQATYNEQPFRSSGLFCCERPGYAAWC
KKFSAG*
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mRNA from alignment at M-pyrifera_M_contig1300:12423..14496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1300.5817.1 ID=mRNA_M-pyrifera_M_contig1300.5817.1|Name=mRNA_M-pyrifera_M_contig1300.5817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2074bp|location=Sequence derived from alignment at M-pyrifera_M_contig1300:12423..14496+ (Macrocystis pyrifera P11B4 male)
CCAGGCTGGTATTCAACGAGTTCATCGAACGTGTGGTCGATGTGTGCTAC
GACTACGTCTTGGACTCCTCGGCCAGAGGACGAGATTGGCTCACCGAACT
GGCCGCGATCGACCTTACGCTTCGTTCTCAGGTACGTCTGTGGCTATCGC
TTGGATGTGTCGAAGTTTTAAGTCGAACAGTGGACGTGCCACACAGCAAG
TTCAACGACACGAAGTCACTCACATGCCACGGGTGGTCGCTTTCATCCAT
CCCTATCCCCTATCCCTAAATACAGTAATTTGTTACTGTATGTTTTCCCC
TCTTTTTGACGAAACGGAATATTTTGATTCGGTCGTCCCGGTGGTCTAGT
GGTGTTCTCGAATGATGGTAGAAATCATTCCGTGAGTTCGAATCCCACCG
CCGTGGTGAGAAGTTGTTTCTTCGTGTTCGAAAAAACAAAACGGAATCAA
CTGCTGAGAGCGCGTAACGTGGGTTGGTGCATTTCGACGCGAGTCGACGA
GGAAAGAAGGGCTGGAAGTCTTCTCGCGATATAAACACAAGGCACGTACC
GTAGGGAGGAGGGGGGAGGAGAACTTGCGCTATGACCCGAATCGGAGCTA
CGACCAGGCGAGCACAATAGATTTTAAAAAAAATAGCGGCAAAGATGATG
AATAGGAAGGAAGAAAAAAGTTAAGGCTGAATATTATGCGTATCAGGTTT
TCGGCCAAACGTAACACAGACGAGGCCAAGGTTCCACTACCGCAGTGTAT
GCCGAGAGGACGTTTTTTCACCATCAGTAATAAGCTTTACTGAGAGGACA
AGGTGGGTGAATATATTCAATTGTTACTATGCTGTGAGTCGGCACGACAT
AAGGCACCAACTAGACGTTAATAATAAGTACCTGCTCGTAGTCGTTTCCC
GGGGGTTTCAACTGTCCGCCTTTTTGGATTTATGTGCTCGTAGGATGCGA
CGGAATGCGGTATGTACCTGGCAGTTTCGTTTTCAGACGGCAAACCGACA
CTGGCAGTCCGCTGGGTTCGTCAGTCGACACTCCGGCTGTAGTCAGTAGT
CGTGAAATACGGTAGAGTCACAACTCTATCAATTACTGACTTGAGCTCGT
GGTGTGATGACCCTTAATTTATTTTGGTTCGACACCTTTACCCGCTCCCC
GAAGTAGGAGTTAGGGGTTATACTTGTTTTGAAATTCGGTTTTGACGCGC
CGGGAGATAATTTTTCTTCAAATGTTTATGAGGGGTCTGGGGGGGTGAAA
TTAATCAACTGACAACCAATTCTTGAGCCACGATTGCTATCAATTGTTTT
TCCTTGTGTTTTCTATCAGACGACACATACATGTTGCATTCTTTTTGGTC
AGAATGACTGCGAAAGTGATGGTAAACGTTCGATTTGCACAGTCGTTTCG
ATAGCATGACTTCGCTTTCGCTGAAACCTCCTGTTCAGTGTGATGTCAGC
AGCATGTACGTGGCTTTCGCCACCCCTATCCCATATTTCTTTGCAACGTA
GTTGCACGTGATGTACCAGCATTCACTTCGGACATGTACGTTGTGAATGA
AGACTTCAAGTCTATATACCGCTATGGCTTGCGTATTTACACAACCAAGG
CCAGAACGGGATGTTTTCTTCGCGGGGAGCAGATCAATGTTAATTTCCAC
GTACCGCGCGTCCGTCTTTCGCTTTCCCCCCTTCGCACCCACTTCGTTTT
CTTGTGCCGGTCCACAGTGCTGGGCGATGCAGATCTTCGTTCGCCTTGGC
TAGATGTTGATCGATTCACTCGACGATCGAGCTACCACATGTAATATGTC
TTGTCGCAGCCTTTGGGACGAATATTACTGCAGTCGGGACGGAGAAGAAG
ACCTCCCTTCACTTCAAGGGCACCACAGGCACCGAGGTTCTCTTGCGCGG
TACGTAGAGATATTTTTGTACATGTTGAGCGTTTCGGCAGCGCTTCGTTA
CGGCATACCGTGTGGCGAGAAAGTGCAAGCGACCTACAACGAACAGCCCT
TTCGTTCGTCAGGCCTCTTTTGTTGCGAGCGCCCAGGATACGCAGCATGG
TGCAAAAAGTTTTCGGCGGGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1300:12423..14496+

>mRNA_M-pyrifera_M_contig1300.5817.1 ID=mRNA_M-pyrifera_M_contig1300.5817.1|Name=mRNA_M-pyrifera_M_contig1300.5817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig1300:12423..14496+ (Macrocystis pyrifera P11B4 male)
ATGTTGATCGATTCACTCGACGATCGAGCTACCACATGTAATATGTCTTG
TCGCAGCCTTTGGGACGAATATTACTGCAGTCGGGACGGAGAAGAAGACC
TCCCTTCACTTCAAGGGCACCACAGGCACCGAGGTTCTCTTGCGCGGTAC
GTAGAGATATTTTTGTACATGTTGAGCGTTTCGGCAGCGCTTCGTTACGG
CATACCGTGTGGCGAGAAAGTGCAAGCGACCTACAACGAACAGCCCTTTC
GTTCGTCAGGCCTCTTTTGTTGCGAGCGCCCAGGATACGCAGCATGGTGC
AAAAAGTTTTCGGCGGGATAAATGTTGATCGATTCACTCGACGATCGAGC
TACCACATGTAATATGTCTTGTCGCAGCCTTTGGGACGAATATTACTGCA
GTCGGGACGGAGAAGAAGACCTCCCTTCACTTCAAGGGCACCACAGGCAC
CGAGGTTCTCTTGCGCGGTACGTAGAGATATTTTTGTACATGTTGAGCGT
TTCGGCAGCGCTTCGTTACGGCATACCGTGTGGCGAGAAAGTGCAAGCGA
CCTACAACGAACAGCCCTTTCGTTCGTCAGGCCTCTTTTGTTGCGAGCGC
CCAGGATACGCAGCATGGTGCAAAAAGTTTTCGGCGGGATAA
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